Behavior and Ecology of the Giant Otter (Pteronura brasiliensis) in Oxbow Lakes of the Manú Biosphere Reserve, Perú

The Giant Otter (Pteronura brasiliensis) is an endangered otter of Amazonian lakes and rivers. It is the only otter of 13 extant species to breed cooperatively in family groups, with young of several years helping to raise younger siblings. I studied giant otters' behavior and ecology in 4 oxbow lakes (or "cochas") in the Manú Biosphere Reserve, Perú during 2003-2006. The objectives of this research were: 1) to investigate whether oxbow lakes return to random or predictable faunal communities after annual flooding; 2) to document seasonal and annual patterns in the diets of giant otters on two phytoplankton-dominated oxbow lakes; and 3) to document and characterize helping behavior in giant otters. I initially classified the four study lakes into 2 lake types, phytoplankton-dominated lakes and macrophyte-dominated lakes. I obtained data on their faunal communities, limnology, and otter diet through four seasons of 2003, and during the dry-seasons of 2004-2006. I show that lakes' bird communities and caiman populations, and to a lesser degree fish communities, respond predictably by lake identity and type. Lake communities also responded to seasonal changes in 2003 data, but generalization to other years is complicated by the destructive flood in January of that year. I studied giant otters' diet using visual observations, and demonstrated seasonal and annual changes not previously reported for the species. Giant otters shift to more intensive use of small cichlid prey found in edge habitats when with young cubs in the dry season. In studying the giant otters' behavior, I showed that hunting skills and helping activities generally increase with age. This observation is consistent with a pattern of "slow learning" suggested by the Skills Hypothesis of Heinsohn (1991). I observed considerable variation in dispersal age and helping contribution within families, particularly with respect to defensive behaviors against potential threats. Finally, the elderly matriarch in one family switched from being a provider of large prey to a beggar from other family members in 2007, apparently from the effects of old age. During 8 days of observation, her offspring assisted her through sharing prey and other types of assistance

Asian elephants as ecological filters in Sundaic forests

Megaherbivores exert strong top-down influence on the ecosystems they inhabit, yet little is known about the foraging impacts of Asian elephants (Elephas maximus) on the structure of Southeast Asia’s rainforests. Our goal was to document Asian elephants’ dietary composition, selectivity, and foraging impacts in a Sundaic rainforest and test whether these differed between habitats. We conducted controlled direct observations of five wild-born captive elephants feeding on six plant types (bamboo, grass, monocot herbs, palms, lianas, and trees) of different age 2 in two habitats (mature vs. early successional forest) in Krau, Peninsular Malaysia. Palms, trees, and lianas formed the bulk of the elephants’ diet. In the mature forest, elephants showed a strong preference for monocots (preference ratio, PR = 5.1), particularly large palms (PR = 5.4), while trees were negatively selected (PR = 0.14). Conversely, in early successional habitats, large tree saplings were positively selected (PR = 1.6). Elephants uprooted (30%) and broke the main stem (30%) of the dicot trees, mainly large saplings, that they handled. Tree saplings broken by elephants had an average diameter of 1.7 ± 1.1 cm (up to 7 cm), with breaks happening at 1.1 ± 0.5 m of height. We estimated that, in a year, an elephant could damage (i.e., either uproot or break) around 39,000 tree saplings if it fed entirely in mature forest, and almost double the number (73,000) if it fed solely in early successional habitats. Assuming a density of 0.05–0.18 elephants/km2, elephant foraging could damage 0.2–0.6% of the tree sapling population per year. Slow growth rates of understory plants in mature forests could result in negative feedbacks, whereby elephants suppress palms, other monocots, and highly preferred tree species. Alternatively, elephants may initiate positive feedbacks by impeding succession along forest edges and in semi-open environments, thereby increasing the size of gaps and the availability of their preferred foodplants. Overall, our results show that Asian elephants act as ecological filters by suppressing the plants they prefer in Southeast Asia’s rainforests

CONSERVATION OF THE ORINOCO GOOSE (NEOCHEN JUBATA) IN THE MIDDLE ARAGUAIA RIVER, TOCANTINS, BRAZIL.

The Orinoco goose, (Neochen jubata) is a grazing herbivore of open habitats that was once widely distributed in tropical South America. Centuries of overhunting and habitat loss have reduced it to widely scattered remnant populations; it is categorized as Near Threatened globally. Within the Cerrado biome, the Middle Araguaia River houses the largest remnant population. In August 2017, a study was started to assess the situation of the Orinoco Goose in the regions of Araguaia National Park, Cantão State Park, and adjacent rice fields. We conducted counts from an aerial census (a 700 km transect), monthly boat censuses (40 km) and land censuses in rice plantations. The aircraft census counted 367 individuals in August 2017, while monthly monitoring of a stretch of the lower Javaés River over more than two years showed a seasonal population variation associated with the flood regime, with the species virtually disappearing during the flood period between January and April when river beaches are submerged. During this period, large flocks of about 1,000 Orinoco Geese were discovered not far away, concentrated in small stretches of rice plantation agro-systems in the region.  This behavioral seasonal concentration makes the species susceptible to poisoning and epizootic diseases. The findings suggest the need to re-categorize the Orinoco Goose population of the Middle Araguaia River as “Threatened” for the State of Tocantins due to the decline observed in the last 10 years, the maximum estimated population size, and the significant seasonal concentrations in a restricted area. At the same time, it is necessary to develop an action plan for its conservation in the surroundings of Ilha do Bananal, and throughout Brazil, where its threat status must be reviewed

A Novel Epstein-Barr Virus Glycoprotein gp150 Expressed from the BDLF3 Open Reading Frame

AbstractAnalysis of cDNAs mapping to the BamHI D fragment of the Epstein-Barr virus (EBV) genome indicates that the BDLF3 open reading frame, which is predicted to encode a type 1 membrane protein of 234 amino acids, is expressed as an unspliced message. Expression of the open reading frame as a recombinant protein in vaccinia virus reveals a glycoprotein that has both N- and O-linked sugars. Antibodies made to the recombinant protein immunoprecipitate a late glycoprotein with a mobility of approximately 150,000 Da from EBV-producing cells. The glycoprotein is associated with the virion. Antibodies to it appear to react primarily with carbohydrate and do not demonstrate neutralizing activity

Satellite telemetry of Blue-throated Macaws in Barba Azul Nature Reserve (Beni, Bolivia) reveals likely breeding areas

The Blue-throated Macaw (Ara glaucogularis) is a Critically Endangered species endemic to the Llanos de Moxos ecosystem of Beni, Bolivia. To aid conservation of the northwestern population that utilizes the Barba Azul Nature Reserve during the non-breeding season, we set out to learn the sites where these birds breed using satellite telemetry. We describe preliminary tests conducted on captive birds (at Loro Parque Foundation, Tenerife, Spain) that resulted in choosing Geotrak Parrot Collars, a metal, battery-operated unit that provides data through the Argos satellite system. In September 2019, we tagged three birds in Barba Azul with Geotrak collars, and received migration data for two birds, until battery depletion in November and December 2019. Our two migrant birds were tracked leaving Barba Azul on the same date (27 September), but departed in divergent directions (approximately 90 degrees in separation). They settled in two sites approximately 50-100 km from Barba Azul. Some details of the work are restricted out of conservation concern as the species still faces poaching pressures. Knowing their likely breeding grounds, reserve managers conducted site visits to where the birds were tracked, resulting in the discovery of breeding birds, although no birds still carrying a transmitter were seen then. A single individual still carrying its collar was spotted 13 August 2021 at Barba Azul. The work suggests that the Blue-throated Macaws of Barba Azul use breeding sites that are scattered across the Llanos de Moxos region, although within the recognized boundaries of the northwestern subpopulation. We conclude that the use of satellite collars is a feasible option for research with the species and could provide further conservation insights

Asian elephants as ecological filters in Sundaic forests

Megaherbivores exert strong top-down influence on the ecosystems they inhabit, yet little is known about the foraging impacts of Asian elephants (Elephas maximus) on the structure of Southeast Asia’s rainforests. Our goal was to document Asian elephants’ dietary composition, selectivity, and foraging impacts in a Sundaic rainforest and test whether these differed between habitats. We conducted controlled direct observations of five wild-born captive elephants feeding on six plant types (bamboo, grass, monocot herbs, palms, lianas, and trees) of different age 2 in two habitats (mature vs. early successional forest) in Krau, Peninsular Malaysia. Palms, trees, and lianas formed the bulk of the elephants’ diet. In the mature forest, elephants showed a strong preference for monocots (preference ratio, PR = 5.1), particularly large palms (PR = 5.4), while trees were negatively selected (PR = 0.14). Conversely, in early successional habitats, large tree saplings were positively selected (PR = 1.6). Elephants uprooted (30%) and broke the main stem (30%) of the dicot trees, mainly large saplings, that they handled. Tree saplings broken by elephants had an average diameter of 1.7 ± 1.1 cm (up to 7 cm), with breaks happening at 1.1 ± 0.5 m of height. We estimated that, in a year, an elephant could damage (i.e., either uproot or break) around 39,000 tree saplings if it fed entirely in mature forest, and almost double the number (73,000) if it fed solely in early successional habitats. Assuming a density of 0.05–0.18 elephants/km2, elephant foraging could damage 0.2–0.6% of the tree sapling population per year. Slow growth rates of understory plants in mature forests could result in negative feedbacks, whereby elephants suppress palms, other monocots, and highly preferred tree species. Alternatively, elephants may initiate positive feedbacks by impeding succession along forest edges and in semi-open environments, thereby increasing the size of gaps and the availability of their preferred foodplants. Overall, our results show that Asian elephants act as ecological filters by suppressing the plants they prefer in Southeast Asia’s rainforests

Wochenende — modular and flexible alignment-based shotgun metagenome analysis

Background: Shotgun metagenome analysis provides a robust and verifiable method for comprehensive microbiome analysis of fungal, viral, archaeal and bacterial taxonomy, particularly with regard to visualization of read mapping location, normalization options, growth dynamics and functional gene repertoires. Current read classification tools use non-standard output formats, or do not fully show information on mapping location. As reference datasets are not perfect, portrayal of mapping information is critical for judging results effectively. Results: Our alignment-based pipeline, Wochenende, incorporates flexible quality control, trimming, mapping, various filters and normalization. Results are completely transparent and filters can be adjusted by the user. We observe stringent filtering of mismatches and use of mapping quality sharply reduces the number of false positives. Further modules allow genomic visualization and the calculation of growth rates, as well as integration and subsequent plotting of pipeline results as heatmaps or heat trees. Our novel normalization approach additionally allows calculation of absolute abundance profiles by comparison with reads assigned to the human host genome. Conclusion: Wochenende has the ability to find and filter alignments to all kingdoms of life using both short and long reads, and requires only good quality reference genomes. Wochenende automatically combines multiple available modules ranging from quality control and normalization to taxonomic visualization. Wochenende is available at https://github.com/MHH-RCUG/nf_wochenende

Community-based conservation with formal protection provides large collateral benefits to Amazonian migratory waterbirds

Populations of migratory waterbirds are facing dramatic declines worldwide due to illegal hunting, habitat loss and climate change. Conservation strategies to reverse these trends are imperative, especially in tropical developing countries, which almost invariably allocate insufficient levels of investment for environmental protection. Here, we compared the effectiveness of sustainable-use Protected Areas (PAs) and Community-based Conservation (CBC) arrangements for the conservation of migratory waterbirds that breed on seasonal riverine sandy beaches in Brazilian Amazonia. We modeled local population responses of four migratory waterbird species on 155 beaches along a ~1,600 km section of a major tributary of the Amazon, as a function of community enforcement, official protection status, human pressure and landscape features. We show that 21 community-protected beaches within the study area host more than 80% of all sampled birds. Black Skimmers showed the most dramatic response, with breeding numbers 135-fold larger in CBC arrangements compared to beaches with no official protection status. The same pattern was observed for nesting Large-Billed and Yellow-Billed Terns. For the Near Threatened Orinoco Goose, PA status was the strongest predictor of local population size. These dramatic results demonstrate the value of protected refugia, achieved through the concerted action of participating local communities, to support breeding populations of key waterbird species. This highly-effective and low-cost conservation model can potentially be replicated in other regions of the developing world experiencing increasingly intensive exploitation of riverine natural resources

Endangered edible orchids and vulnerable gatherers in the context of HIV/AIDS in the Southern Highlands of Tanzania

This is an Open Access article distributed under the terms of the Creative Commons Attribution Licens

The MUSCLES Treasury Survey. I. Motivation and overview

Ground- and space-based planet searches employing radial velocity techniques and transit photometry have detected thousands of planet-hosting stars in the Milky Way. With so many planets discovered, the next step toward identifying potentially habitable planets is atmospheric characterization. While the Sun–Earth system provides a good framework for understanding the atmospheric chemistry of Earth-like planets around solar-type stars, the observational and theoretical constraints on the atmospheres of rocky planets in the habitable zones (HZs) around low-mass stars (K and M dwarfs) are relatively few. The chemistry of these atmospheres is controlled by the shape and absolute flux of the stellar spectral energy distribution (SED), however, flux distributions of relatively inactive low-mass stars are poorly understood at present. To address this issue, we have executed a panchromatic (X-ray to mid-IR) study of the SEDs of 11 nearby planet-hosting stars, the Measurements of the Ultraviolet Spectral Characteristics of Low-mass Exoplanetary Systems (MUSCLES) Treasury Survey. The MUSCLES program consists visible observations from Hubble and ground-based observatories. Infrared and astrophysically inaccessible wavelengths (EUV and Lyα ) are reconstructed using stellar model spectra to fill in gaps in the observational data. In this overview and the companion papers describing the MUSCLES survey, we show that energetic radiation (X-ray and ultraviolet) is present from magnetically active stellar atmospheres at all times for stars as late as M6. The emission line luminosities of C iv and Mg ii are strongly correlated with band-integrated luminosities and we present empirical relations that can be used to estimate broadband FUV and XUV (≡X-ray + EUV) fluxes from individual stellar emission line measurements. We find that while the slope of the SED, FUV/NUV, increases by approximately two orders of magnitude form early K to late M dwarfs (≈0.01–1), the absolute FUV and XUV flux levels at their corresponding HZ distances are constant to within factors of a few, spanning the range 10–70 erg cm−2 s−1 in the HZ. Despite the lack of strong stellar activity indicators in their optical spectra, several of the M dwarfs in our sample show spectacular UV flare emission in their light curves. We present an example with flare/quiescent ultraviolet flux ratios of the order of 100:1 where the transition region energy output during the flare is comparable to the total quiescent luminosity of the star Eflare(UV) ∼ 0.3 L*Δt (Δt = 1 s). Finally, we interpret enhanced L(line)/LBol ratios for C iv and N v as tentative observational evidence for the interaction of planets with large planetary mass-to-orbital distance ratios (Mplan/aplan) with the transition regions of their host stars.Publisher PDFPeer reviewe