Calcium isotopic composition of high-latitude proxy carrier Neogloboquadrina pachyderma (sin.)

The accurate reconstruction of sea surface temperature (SST) history in climate-sensitive regions (e.g. tropical and polar oceans) became a challenging task in palaeoceanographic research. Biogenic shell carbonate SST proxies successfully developed for tropical regions often fail in cool water environments. Their major regional shortcomings and the cryptic diversity now found within the major high latitude proxy carrier Neogloboquadrina pachyderma (sin.) highlight an urgent need to explore complementary SST proxies for these cool-water regions. Here we incorporate the genetic component into a calibration study of a new SST proxy for the high latitudes. We found that the calcium isotopic composition (δ44/40Ca) of calcite from genotyped net catches and core-top samples of the planktonic foraminifera Neogloboquadrina pachyderma (sin.) is related to temperature and unaffected by genetic variations. The temperature sensitivity has been found to be 0.17 (±0.02)‰ per 1°C, highlighting its potential for downcore applications in open marine cool-water environments. Our results further indicate that in extreme polar environments, below a critical threshold temperature of 2.0 (±0.5)°C associated with salinities below 33.0 (±0.5)‰, a prominent shift in biomineralization affects the δ44/40Ca of genotyped and core-top N. pachyderma (sin.), becoming insensitive to temperature. These findings highlight the need of more systematic calibration studies on single planktonic foraminiferal species in order to unravel species-specific factors influencing the temperature sensitivity of Ca isotope fractionation and to validate the proxies' applicability

Ornamental Bill Color Rapidly Signals Changing Condition

Ornamental bill color is postulated to function as a condition-dependent signal of individual quality in a variety of taxonomically distant bird families. Most red, orange, and yellow bill colors are derived from carotenoid pigments, and carotenoid deposition in ornamentation may trade off with their use as immunostimulants and antioxidants or with other physiological functions. Several studies have found that bill color changes in response to physiological perturbations, but how quickly such changes can occur remains unclear. We tested the hypothesis that carotenoid-based orange bill color of American goldfinches Spinus tristis responds dynamically to rapid changes in physiological stress and reflects short-term changes in condition. We captured male and female goldfinches and measured bill color in the field and again under captive conditions several hours later. The following day, the captive birds were injected with either immunostimulatory lipopolysaccharide (LPS) or a control saline and changes in bill color were measured over a five day period. Yellow saturation of the bill decreased within 6.5 h between the field and captivity measures on the first day, presumably in response to capture stress. Over the longer experimental period, bill hue and luminance decreased significantly, whereas saturation significantly increased in both LPS and control groups. Bill hue and luminance decreased significantly more in birds treated with LPS than in control birds. Among LPS treated birds, individuals expressing high bill color at the beginning of the experiment lost more color than ‘low-color’ birds, but still retained higher color at the end of the experiment, suggesting that birds that invest heavily in bill coloration are able to sustain high costs in the face of a challenge. Bill color change may have resulted from rapid reallocation of carotenoids from ornamentation to immune function. However, the complex shifts in bill color over time suggest that bill color may be influenced by multiple carotenoid compounds and/or changes in blood flow or chemistry in vessels just beneath the translucent keratinized outer layer of the bill. We conclude that bill color is a dynamic, condition-dependent trait that strategically and reliably signals short-term fluctuations in physiological condition

A Search for OH Megamasers at z > 0.1. I. Preliminary Results

We present the preliminary results of a survey for OH megamasers underway at the Arecibo Observatory. The goals of the survey are to calibrate the luminosity function of OH megamasers to the low-redshift galaxy merger rate (0.1 < z < 0.2), and to use the enhanced sample of OH megamasers provided by the survey to study OH megamaser environments, engines, lifetimes, and structure. The survey should double the known OH megamaser sample to roughly 100 objects. Survey results will be presented in installments to facilitate community access to the data. Here we report the discovery of 11 OH megamasers and one OH absorber, and include upper limits on the isotropic 1667 MHz OH line luminosity of 53 other luminous infrared galaxies at z > 0.1. The new megamasers show a wide range of spectral properties, but are consistent with the extant set of 55 previously reported objects, only 8 of which have z > 0.1.Comment: 18 pages, 3 figures, accepted for publication in the Astronomical Journa

Detection of chloronium and measurement of the 35Cl/37Cl isotopic ratio at z=0.89 toward PKS1830-211

We report the first extragalactic detection of chloronium (H2Cl+), in the z=0.89 absorber in front of the lensed blazar PKS1830-211. The ion is detected through its 1_11-0_00 line along two independent lines of sight toward the North-East and South-West images of the blazar. The relative abundance of H2Cl+ is significantly higher (by a factor ~7) in the NE line of sight, which has a lower H2/H fraction, indicating that H2Cl+ preferably traces the diffuse gas component. From the ratio of the H2^35Cl+ and H2^37Cl+ absorptions toward the SW image, we measure a 35Cl/37Cl isotopic ratio of 3.1 (-0.2; +0.3) at z=0.89, similar to that observed in the Galaxy and the solar system.Comment: Accepted for publication in A&A Lette

Probing the jet base of the blazar PKS1830-211 from the chromatic variability of its lensed images. Serendipitous ALMA observations of a strong gamma-ray flare

The launching mechanism of the jets of active galactic nuclei is observationally poorly constrained, due to the large distances to these objects and the very small scales (sub-parsec) involved. In order to better constrain theoretical models, it is especially important to get information from the region close to the physical base of the jet, where the plasma acceleration takes place. In this paper, we report multi-epoch and multi-frequency continuum observations of the z=2.5 blazar PKS1830-211 with ALMA, serendipitously coincident with a strong $\gamma$-ray flare reported by Fermi-LAT. The blazar is lensed by a foreground z=0.89 galaxy, with two bright images of the compact core separated by 1". Our ALMA observations individually resolve these two images (although not any of their substructures), and we study the change of their relative flux ratio with time (four epochs spread over nearly three times the time delay between the two lensed images) and frequency (between 350 and 1050 GHz, rest-frame of the blazar), during the $\gamma$-ray flare. In particular, we detect a remarkable frequency-dependent behaviour of the flux ratio, which implies the presence of a chromatic structure in the blazar (i.e., a core-shift effect). We rule out the possiblity of micro- and milli-lensing effects and propose instead a simple model of plasmon ejection in the blazar's jet to explain the time and frequency variability of the flux ratio. We suggest that PKS1830-211 is likely one of the best sources to probe the activity at the base of a blazar's jet at submillimeter wavelengths, thanks to the peculiar geometry of the system. The implications of the core-shift in absorption studies of the foreground z=0.89 galaxy (e.g., constraints on the cosmological variations of fundamental constants) are discussed.Comment: Accepted for publication in A&

A Search for OH Megamasers at z > 0.1. III. The Complete Survey

We present the final results from the Arecibo Observatory OH megamaser survey. We discuss in detail the properties of the remaining 18 OH megamasers detected in the survey, including 3 redetections. We place upper limits on the OH emission from 85 nondetections and examine the properties of 25 ambiguous cases for which the presence or absence of OH emission could not be determined. The complete survey has discovered 50 new OH megamasers (OHMs) in (ultra)luminous infrared galaxies ([U]LIRGs) which doubles the sample of known OHMs and increases the sample at z>0.1 sevenfold. The Arecibo OH megamaser survey indicates that the OHM fraction in LIRGs is an increasing function of the far-IR luminosity (L_{FIR}) and far-IR color, reaching a fraction of roughly one third in the warmest ULIRGs. Significant relationships between OHMs and their hosts are few, primarily due to a mismatch in size scales of measured properties and an intrinsic scatter in OHM properties roughly equal to the span of the dataset. We investigate relationships between OHMs and their hosts with a variety of statistical tools including survival analysis, partial correlation coefficients, and a principal component analysis. There is no apparent OH megamaser ``fundamental plane.'' We compile data on all previously known OHMs and evaluate the possible mechanisms and relationships responsible for OHM production in merging systems. The OH-FIR relationship is reexamined using the doubled OHM sample and found to be significantly flatter than previously thought: L_{OH} ~ L_{FIR}^{1.2 +/- 0.1}. This near-linear dependence suggests a mixture of saturated and unsaturated masers, either within individual galaxies or across the sample.Comment: 28 pages, 14 figures, accepted by AJ. (AASTeX, includes emulateapj5 and onecolfloat5

Planktonic foraminifera-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology

The study was supported by Swiss National Science Foundation grants 31003A-140766 and 313003A-159709 and by the DFG Research Centre/Cluster of Excellence “The Ocean in the Earth System”.Deep-sea sediments constitute a unique archive of ocean change, fueled by a permanent rain of mineral and organic remains from the surface ocean. Until now, paleo-ecological analyses of this archive have been mostly based on information from taxa leaving fossils. In theory, environmental DNA (eDNA) in the sediment has the potential to provide information on non-fossilized taxa, allowing more comprehensive interpretations of the fossil record. Yet, the process controlling the transport and deposition of eDNA onto the sediment and the extent to which it preserves the features of past oceanic biota remains unknown. Planktonic foraminifera are the ideal taxa to allow an assessment of the eDNA signal modification during deposition because their fossils are well preserved in the sediment and their morphological taxonomy is documented by DNA barcodes. Specifically, we re-analyze foraminiferal-specific metabarcodes from 31 deep-sea sediment samples, which were shown to contain a small fraction of sequences from planktonic foraminifera. We confirm that the largest portion of the metabarcode originates from benthic bottom-dwelling foraminifera, representing the in situ community, but a small portion (< 10 %) of the metabarcodes can be unambiguously assigned to planktonic taxa. These organisms live exclusively in the surface ocean and the recovered barcodes thus represent an allochthonous component deposited with the rain of organic remains from the surface ocean. We take advantage of the planktonic foraminifera portion of the metabarcodes to establish to what extent the structure of the surface ocean biota is preserved in sedimentary eDNA. We show that planktonic foraminifera DNA is preserved in a range of marine sediment types, the composition of the recovered eDNA metabarcode is replicable and that both the similarity structure and the diversity pattern are preserved. Our results suggest that sedimentary eDNA could preserve the ecological structure of the entire pelagic community, including non-fossilized taxa, thus opening new avenues for paleoceanographic and paleoecological studies.Publisher PDFPeer reviewe

Studying changes in the practice of two teachers developing assessment for learning

This paper describes changes in the practice of two teachers, observed over an eighteen month period, who were participating in a study intended to support teachers in developing their use of assessment in support of learning. The design of the intervention allowed each teacher to choose for themselves which aspects of their practice to develop. Analysis of lesson observations, journal entries and interviews indicate that both teachers were keen to change their practice, but were concerned about the disruption to their established routines, and in particular about the potential for loss of control of their classes. Both teachers did effect significant changes in their classrooms, but these tended to be developments of existing preferred ways of working, rather than radical innovations. In conclusion, it is suggested that to be most effective, teacher professional development needs to be structured strongly enough to afford teacher growth, but flexible enough to allow different teachers to take their practice in different ways

A Search for OH Megamasers at z > 0.1. II. Further Results

We present current results of an ongoing survey for OH megamasers in luminous infrared galaxies at the Arecibo Observatory. The survey is now two-thirds complete, and has resulted in the discovery of 35 new OH megamasers at z > 0.1, 24 of which are presented in this paper. We discuss the properties of each source in detail, including an exhaustive survey of the literature. We also place upper limits on the OH emission from 107 nondetections and list their IR, radio, and optical properties. The survey detection rate is 1 OH megamaser for every 6 candidates overall, but is a strong function of the far IR luminosity of candidates and may depend on merger stage or on the central engine responsible for the IR luminosity in the merging galaxy pair. We also report the detection of IRAS 12032+1707, a new OH gigamaser.Comment: 19 pages with 6 embedded figures and 4 tables. To appear in the Astronomical Journal (March 2001

GenomeRing: alignment visualization based on SuperGenome coordinates

Motivation: The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often based on whole-genome alignments to elucidate structural differences arising from insertions, deletions or from rearrangement events. Computational tools that can visualize genome alignments in a meaningful manner are needed to help researchers gain new insights into the underlying data. Such visualizations typically are either realized in a linear fashion as in genome browsers or by using a circular approach, where relationships between genomic regions are indicated by arcs. Both methods allow for the integration of additional information such as experimental data or annotations. However, providing a visualization that still allows for a quick and comprehensive interpretation of all important genomic variations together with various supplemental data, which may be highly heterogeneous, remains a challenge