DendroSync: An R package to unravel synchrony patterns in tree-ring networks

Spatial synchrony refers to the presence of a common signal for a time-varying characteristic that, in dendrosciences, is shared among tree-ring chronologies from a particular area. Analysis and interpretation of synchrony patterns in tree-ring networks is currently limited by: (i) the requirement for flexible modelling of complex correlations and heteroscedastic errors and (ii) the availability of ready-to-use open software to fulfil this task. We present an R package (DendroSync) that facilitates estimating and plotting synchrony patterns for pre-defined groups. The package has been devised to work with traits derived from tree rings (e.g. ring-width), but other data types are also suitable. It combines variance-covariance mixed modelling with functions that quantify the degree to which tree-ring chronologies contain a common signal over a fixed time period. It also estimates temporal changes in synchrony using a moving window algorithm. The functionality and usage of DendroSync are illustrated using a simple example

Modelling monetary transmission in UK manufacturing industry

This paper studies the transmission of monetary policy to industrial output in the UK. In order to capture asymmetries, a system of threshold equations is considered. However, unlike previous research, endogenous threshold parameters are allowed to be different for each equation. This approach is consistent with economic intuition and is shown to be of tangible importance after suitable econometric evaluation. Results show evidence of cross-sectional differences across industries and asymmetries in some sectors. These findings contribute to the debate about the importance of alternative economic theories to explain these asymmetries and support the use of a sectorally disaggregated approach to the analysis of monetary transmission

Blocking two-component signalling enhances Candida albicans virulence and reveals adaptive mechanisms that counteract sustained SAPK activation

This work was funded by the UK Biotechnology and Biological Research Council [www.bbsrc.ac.uk] JQ (BB/K016393/1); AJPB (BB/K017365/1). The work was also supported by the Wellcome Trust [www.wellcome.ac.uk], JQ (086048, 097377); AJPB (097377)); LPE (097377). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.Peer reviewedPublisher PD

Sfp1 and Rtg3 reciprocally modulate carbon source-conditional stress adaptation in the pathogenic yeast Candida albicans

Acknowledgements We thank Aaron Mitchell, Dominique Sanglard and Suzanne Noble for their generosity in providing mutant collections, and Linghuo Jiang for generously providing strains. We also thank Susan Budge for her support and excellent technical assistance. We also thank the qPCR Facility in the Institute of Medical Sciences, and particularly Fiona Saunders for her great advice and help. SLK was supported by a PhD scholarship from the University of Aberdeen. AJPB was supported by the UK Biotechnology and Biological Research Council (BB/F00513X/1; BB/K017365/1), by the European Research Council (STRIFE Advanced Grant; ERC-2009-AdG-249793), and by the UK Medical Research Council (MR/M026663/1). AJPB and CAM were also supported by the Wellcome Trust (088858; 097377), and by the MRC Centre for Medical Mycology and the University of Aberdeen (MR/N006364/1).Peer reviewedPublisher PD

Tumor desmoide extraabdominal en rodilla: a propósito de un caso

Los tumores desmoides o fibromatosis agresiva son neoplasias de partes blandas muy poco frecuentes. Son localmente agresivos y recurrentes, aunque carecen de potencial metastásico. La forma extraabdominal es la más infrecuente y asienta habitualmente sobre la cintura pélvica o escapular. Presentamos el caso de una paciente a la que se le diagnosticó un tumor desmoide extraabdominal en la rodilla izquierda que se manifestó inicialmente como una tumoración dolorosa.Desmoid tumours or aggressive fibromatosis are rare neoplasm of soft tissues. They are locally aggressive and recurrent, although they have no metastatic potential. The extra-abdominal appearance is the less common and tumors are frequently located around pelvic or scapular vicinity. We report a case of a patient who suffered an extra-abdominal desmoid tumor in her left knee that arose as a painful bump

Enabling onshore CO2 storage in Europe: fostering international cooperation around pilot and test sites

To meet the ambitious EC target of an 80% reduction in greenhouse gas emissions by 2050, CO2 Capture and Storage (CCS) needs to move rapidly towards full scale implementation with geological storage solutions both on and offshore. Onshore storage offers increased flexibility and reduced infrastructure and monitoring costs. Enabling onshore storage will support management of decarbonisation strategies at territory level while enhancing security of energy supply and local economic activities, and securing jobs across Europe. However, successful onshore storage also requires overcoming some unique technical and societal challenges. ENOS will provide crucial advances to help foster onshore CO2 storage across Europe through: 1. Developing, testing and demonstrating in the field, under "real-life conditions", key technologies specifically adapted to onshore storage. 2. Contributing to the creation of a favourable environment for onshore storage across Europe. The ENOS site portfolio will provide a great opportunity for demonstration of technologies for safe and environmentally sound storage at relevant scale. Best practices will be developed using experience gained from the field experiments with the participation of local stakeholders and the lay public. This will produce improved integrated research outcomes and increase stakeholder understanding and confidence in CO2 storage. In this improved framework, ENOS will catalyse new onshore pilot and demonstration projects in new locations and geological settings across Europe, taking into account the site-specific and local socio-economic context. By developing technologies from TRL4/5 to TRL6 across the storage lifecycle, feeding the resultant knowledge and experience into training and education and cooperating at the pan-European and global level, ENOS will have a decisive impact on innovation and build the confidence needed for enabling onshore CO2 storage in Europe. ENOS is initiating strong international collaboration between European researchers and their counterparts from the USA, Canada, South Korea, Australia and South Africa for sharing experience worldwide based on real-life onshore pilots and field experiments. Fostering experience-sharing and research alignment between existing sites is key to maximise the investment made at individual sites and to support the efficient large scale deployment of CCS. ENOS is striving to promote collaboration between sites in the world through a programme of site twinning, focus groups centered around operative issues and the creation of a leakage simulation alliance

Justice and the cost of doing business: The Philippines

The effect of the performance of the judicial system has been thrown into the limelight as the business sector has in various surveys pointed to its performance as being one of the main obstacles and disincentives to doing business in the Philippines. The channels through which judicial decisions may affect business behaviour are fairly straightforward and may be reduced to two: increased uncertainty and high costs. In order to quantify the perceived effect of the workings of the judiciary on the various economic decisions and on investment in general, a survey of 320 of the top 7000 corporations in the Philippines was conducted in 2001. Our findings show that governance problems are at least as important as economic or financial problems in doing business. Only weak market demand was cited as being more important than corruption, high crime levels, and lack of trust in government laws and policies as important obstacles to doing business. Of more direct relevance to the judiciary, difficulties in settling legal conflicts were the sixth most frequently cited factor affecting business, after high power costs but even more important than poor physical infrastructure and access to credit. Further, the current level of functioning of the legal system has an economic impact equivalent to foregoing at least 6-11 percent of total investment in the economy and foregoing at least one-fourth to onehalf of a percentage point (0.25-0.46) of GDP growth annually, or an annual loss amounting to between P7 billion and P13 billion in 1999 alone. These are significant and recurring economic losses attributable to the nature and functioning of institutions and form a strong case for judicial reform

Heterogeneous electro-Fenton treatment: preparation, characterization and performance in groundwater pesticide removal

In this work the preparation, characterization and performance of Y-zeolite as catalyst for electro-Fenton treatment of pesticides was carried out. Initially iron supported Y-zeolite (Fe-Y) was prepared and evaluated for the degradation of imidacloprid and chlorpyrifos. Kinetics studies determined that the pesticides removal followed a pseudo-first-order kinetic model. However, the reusability of this catalyst was not appropriated and to enhance its recyclability, Fe-Y catalyst was embedded in alginate (Al-Fe-Y). The new catalyst showed similar degradation efficiency; and the recyclability was improved. This study demonstrated that Al-Fe-Y could be efficiently used to remove commonly pesticides, imidacloprid and chlorpyrifos, of aqueous medium.This work has been supported by the Xunta de Galicia (EM2012/083). The authors are thankful to the Ramón y Cajal programme for Marta Pazos’ financial support and to C.A.C.T.I. from Vigo University for providing access to their Electron Microscopy Service

Upside-down fluxes Down Under: CO2 net sink in winter and net source in summer in a temperate evergreen broadleaf forest

Predicting the seasonal dynamics of ecosystem carbon fluxes is challenging in broadleaved evergreen forests because of their moderate climates and subtle changes in canopy phenology. We assessed the climatic and biotic drivers of the seasonality of net ecosystem–atmosphere CO2 exchange (NEE) of a eucalyptus-dominated forest near Sydney, Australia, using the eddy covariance method. The climate is characterised by a mean annual precipitation of 800mm and a mean annual temperature of 18°C, hot summers and mild winters, with highly variable precipitation. In the 4-year study, the ecosystem was a sink each year (−225gCm−2yr−1 on average, with a standard deviation of 108gCm−2yr−1); inter-annual variations were not related to meteorological conditions. Daily net C uptake was always detected during the cooler, drier winter months (June through August), while net C loss occurred during the warmer, wetter summer months (December through February). Gross primary productivity (GPP) seasonality was low, despite longer days with higher light intensity in summer, because vapour pressure deficit (D) and air temperature (Ta) restricted surface conductance during summer while winter temperatures were still high enough to support photosynthesis. Maximum GPP during ideal environmental conditions was significantly correlated with remotely sensed enhanced vegetation index (EVI; r2 = 0.46) and with canopy leaf area index (LAI; r2= 0.29), which increased rapidly after mid-summer rainfall events. Ecosystem respiration (ER) was highest during summer in wet soils and lowest during winter months. ER had larger seasonal amplitude compared to GPP, and therefore drove the seasonal variation of NEE. Because summer carbon uptake may become increasingly limited by atmospheric demand and high temperature, and because ecosystem respiration could be enhanced by rising temperatures, our results suggest the potential for large-scale seasonal shifts in NEE in sclerophyll vegetation under climate change.The Australian Education Investment Fund, Australian Terrestrial Ecosystem Research Network, Australian Research Council and Hawkesbury Institute for the Environment at Western Sydney University supported this work. We thank Jason Beringer, Helen Cleugh, Ray Leuning and Eva van Gorsel for advice and support. Senani Karunaratne provided soil classification details

NADPH Oxidase-Dependent Superoxide Production in Plant Reproductive Tissues

In the life cycle of a flowering plant, the male gametophyte (pollen grain) produced in the anther reaches the stigmatic surface and initiates the pollen–pistil interaction, an important step in plant reproduction, which ultimately leads to the delivery of two sperm cells to the female gametophyte (embryo sac) inside the ovule. The pollen tube undergoes a strictly apical expansion characterized by a high growth rate, whose targeting should be tightly regulated. A continuous exchange of signals therefore takes place between the haploid pollen and diploid tissue of the pistil until fertilization. In compatible interactions, theses processes result in double fertilization to form a zygote (2n) and the triploid endosperm. Among the large number of signaling mechanisms involved, the redox network appears to be particularly important. Respiratory burst oxidase homologs (Rbohs) are superoxide-producing enzymes involved in a broad range of processes in plant physiology. In this study, we review the latest findings on understanding Rboh activity in sexual plant reproduction, with a particular focus on the male gametophyte from the anther development stages to the crowning point of fertilization. Rboh isoforms have been identified in both the male and female gametophyte and have proven to be tightly regulated. Their role at crucial points such as proper growth of pollen tube, self-incompatibility response and eventual fertilization is discussed. [EN]European Regional Development Fund (ERDF) co-financed grants: BFU2008-006292, BFU2011-22779, CSIC-201540E065, and RECUPERA2020-3.1.4.Peer reviewe