Morphological, physiological and pathogenic variability of small-spore Alternaria sp. causing leaf blight of Solanaceous plants in Algeria

Due to premature defoliation, early blight epidemics can cause major yield losses. Large-spore Alternaria species such as A. solani and A. tomatophila have long been recognized as important pathogens responsible for such blight disease in the family Solanaceae and thus represent a serious risk for crop production. Small-spore Alternaria species have also been frequently isolated from plant samples with typical blight symptoms but their incidence as primary pathogens is often controversial. In order to study the diversity of small-spore Alternaria species, 32 isolates were selected from a larger collection of 130 isolates from infected leaves, fruits and stems of tomato from various growing regions of North-West Algeria. Morphological characterization under standard conditions and polymerase chain reaction (PCR) analyses using specific primers to amplify a part of the ITS regions and the 5.8S gene were conducted to confirm their identification as members of the alternata section. They were then examined according to morphological characteristics of conidia and sporulation patterns on potato carrot agar (PCA) and were segregated into three morphological species: A. alternata, A. tenuissima and A. arborescens. Colony type, substrate colour, margin, zonation, pigmentation, colony diameter and conidia production were studied on potato sucrose agar (PSA). Physiological parameters and nutritional requirements of the isolates were also assessed and a data matrix based on cluster analysis and Euclidean distance was constructed. Results of pathogenicity test on tomato showed obvious diversity among the isolates and they could be separated into two groups based on their virulence. The dendrogram based on the influence of cultural, nutritional and physiological characters suggests moderate heterogeneity within the populations of A. alternata and A. tenuissima. The small-spore species formed five clusters that fundamentally paralleled the morphological groupings. However, the results provided no evidence for geographical and pathogenicity clustering of isolates

First report of tomato early blight caused by Alternaria grandis in Algeria

Tomatoes (Solanum lycopersicum) are widely cultivated in Algeria throughout the year. In northwestern growing areas, characterized by temperate humid climates, severe early blight symptoms (i.e., black lesions surrounded by a yellow halo) on tomato leaves are regularly observed. In 2013, diseased samples were collected from various cultivars in five farms of the Mostaganem region where average disease incidence reached 50%. Plant material was cut into ∼2-mm pieces, surface sterilized in 0.1% (v/v) Na hypochlorite for 2 min, transferred into potato agar medium, and incubated for 48 h at 25°C. Fungal mycelium developing from the lesion margins was transferred to potato carrot agar medium and further incubated for 7 days alternating darkness and cool-white fluorescent light to induce sporulation. Both small- and large-spored Alternaria isolates were obtained. While most of the large-spored isolates had morphological characteristics of A. linariae (syn. A. tomatophila) (Woudenberg et al. 2014), large-spored isolates from one location (Mamache) produced ovoid conidia whose length and width were 149.8 ± 8.9 µm and 16.4 ± 1.3 µm, respectively, ended by a single beak measuring up to 120 µm. Based on these morphological characteristics and host origin, these isolates were initially described as A. solani (Simmons 2000). To confirm the identification at the species level, DNA was extracted from mycelium of four representative isolates. As polymorphism in the ITS regions of rDNA is too low to delineate species within the Alternaria section Porri (Woudenberg et al. 2014), partial regions of the glyceraldehyde-3-phosphate dehydrogenase (gpd) and of the calmodulin (cal) genes were amplified using published primer sets (Gannibal et al. 2014; Woudenberg et al. 2014). For two isolates (NB250 and NB252), the sequences of the amplified products (GenBank Accession Nos. KR911747, KR911752 KR911765, and KR911767) were 100% identical to corresponding sequences of A. solani isolate CBS 109157 (GQ180080 and KJ397981). The gpd and cal sequences of the remaining isolates (NB248 and NB249, GenBank Accession Nos. KR911748, KR911754, KR911763, and KR911764) shared 100% sequence homology to A. grandis isolate CBS109158 (JQ646341 and JQ646249) and they were therefore assigned to this species. To confirm pathogenicity on tomato, the four isolates were spray inoculated (104 conidia/ml) on leaves of 3-week-old tomato plants (cv. Saint Pierre) in the greenhouse. Three replicates were performed for each test. Plants were rated for disease symptoms up to 21 days post inoculation (dpi). No symptom was observed on control plants treated with distilled water. All plants inoculated with A. solani and A. grandis isolates produced extending lesions on leaves albeit with variable virulence (affected leaf area from 50 to 80% at 21 dpi for NB249 and NB250, respectively). To our knowledge, this is the first report of A. grandis infecting tomato in Algeria and in Africa. Moreover, A. grandis has been reported on potato crops in North and South America (Simmons 2000; Rodrigues et al. 2010), but never on tomato. The fact that potato and tomato fields often coexist in close proximity in northwestern Algeria even with farmers using potato in rotation with tomato may favor the development of A. grandis on the latter plant species

Alternaria species associated with early blight epidemics on tomato and other Solanaceae crops in northwestern Algeria

Early blight is a common disease of Solanaceae crops worldwide. The occurrence of Alternaria spp. was studied during three epidemics on tomato in northwestern Algeria. Alternaria was detected in more than 80 % of the diseased plant samples and accounted for more than 50 % of the total fungal isolates recovered from these samples. Morphological and molecular investigations revealed that small-spored isolates producing beaked conidia, i.e. belonging to the section alternaria, were prominent in most of the surveyed locations representing more than 80 % of the total Alternaria isolates in three locations (Mascara, Ain Témouchent and Sidi Belabbèsse). Based on their sporulation patterns they were recognized as A. alternata and A. tenuissima. Small-spored isolates producing conidia without beak and assigned to A. consortialis were also found at a low frequency (< 1 %). Large-spored isolates producing conidia ended by typical long beaks and identified as A. linariae (syn. A. tomatophila), A. solani and A. grandis were also recovered from all the sampled areas and represented 33.8 %, 6.3 % and 1.3 % of the total Alternaria isolates, respectively. Pathogenicity tests on tomato with a selection of 85 strains representative of the isolates collection revealed that all the tested isolates were able to produce extending lesions on inoculated leaves albeit with variable intensity. Large-spored species included the most aggressive isolates. Small-spored Alternaria, although less aggressive than large-spored Alternaria, had the ability to provoke brown necrotic spots and circumstantially developed synergistic interactions in mixed infections with moderately aggressive isolates of A. linariae

Inclusive cross section and double helicity asymmetry for \pi^0 production in p+p collisions at sqrt(s)=200 GeV: Implications for the polarized gluon distribution in the proton

The PHENIX experiment presents results from the RHIC 2005 run with polarized proton collisions at sqrt(s)=200 GeV, for inclusive \pi^0 production at mid-rapidity. Unpolarized cross section results are given for transverse momenta p_T=0.5 to 20 GeV/c, extending the range of published data to both lower and higher p_T. The cross section is described well for p_T < 1 GeV/c by an exponential in p_T, and, for p_T > 2 GeV/c, by perturbative QCD. Double helicity asymmetries A_LL are presented based on a factor of five improvement in uncertainties as compared to previously published results, due to both an improved beam polarization of 50%, and to higher integrated luminosity. These measurements are sensitive to the gluon polarization in the proton, and exclude maximal values for the gluon polarization.Comment: 375 authors, 7 pages, 3 figures. Submitted to Phys. Rev. D, Rapid Communications. Plain text data tables for the points plotted in figures for this and previous PHENIX publications are (or will be) publicly available at http://www.phenix.bnl.gov/papers.htm

Dilepton mass spectra in p+p collisions at sqrt(s)= 200 GeV and the contribution from open charm

The PHENIX experiement has measured the electron-positron pair mass spectrum from 0 to 8 GeV/c^2 in p+p collisions at sqrt(s)=200 GeV. The contributions from light meson decays to e^+e^- pairs have been determined based on measurements of hadron production cross sections by PHENIX. They account for nearly all e^+e^- pairs in the mass region below 1 GeV/c^2. The e^+e^- pair yield remaining after subtracting these contributions is dominated by semileptonic decays of charmed hadrons correlated through flavor conservation. Using the spectral shape predicted by PYTHIA, we estimate the charm production cross section to be 544 +/- 39(stat) +/- 142(syst) +/- 200(model) \mu b, which is consistent with QCD calculations and measurements of single leptons by PHENIX.Comment: 375 authors from 57 institutions, 18 pages, 4 figures, 2 tables. Submitted to Physics Letters B. v2 fixes technical errors in matching authors to institutions. Plain text data tables for the points plotted in figures for this and previous PHENIX publications are (or will be) publicly available at http://www.phenix.bnl.gov/papers.htm

System Size and Energy Dependence of Jet-Induced Hadron Pair Correlation Shapes in Cu+Cu and Au+Au Collisions at sqrt(s_NN) = 200 and 62.4 GeV

We present azimuthal angle correlations of intermediate transverse momentum (1-4 GeV/c) hadrons from {dijets} in Cu+Cu and Au+Au collisions at sqrt(s_NN) = 62.4 and 200 GeV. The away-side dijet induced azimuthal correlation is broadened, non-Gaussian, and peaked away from \Delta\phi=\pi in central and semi-central collisions in all the systems. The broadening and peak location are found to depend upon the number of participants in the collision, but not on the collision energy or beam nuclei. These results are consistent with sound or shock wave models, but pose challenges to Cherenkov gluon radiation models.Comment: 464 authors from 60 institutions, 6 pages, 3 figures, 2 tables. Submitted to Physical Review Letters. Plain text data tables for the points plotted in figures for this and previous PHENIX publications are (or will be) publicly available at http://www.phenix.bnl.gov/papers.htm

Measurement of Bottom versus Charm as a Function of Transverse Momentum with Electron-Hadron Correlations in p+p Collisions at sqrt(s)=200 GeV

The momentum distribution of electrons from semi-leptonic decays of charm and bottom for mid-rapidity |y|<0.35 in p+p collisions at sqrt(s)=200 GeV is measured by the PHENIX experiment at the Relativistic Heavy Ion Collider (RHIC) over the transverse momentum range 2 < p_T < 7 GeV/c. The ratio of the yield of electrons from bottom to that from charm is presented. The ratio is determined using partial D/D^bar --> e^{+/-} K^{-/+} X (K unidentified) reconstruction. It is found that the yield of electrons from bottom becomes significant above 4 GeV/c in p_T. A fixed-order-plus-next-to-leading-log (FONLL) perturbative quantum chromodynamics (pQCD) calculation agrees with the data within the theoretical and experimental uncertainties. The extracted total bottom production cross section at this energy is \sigma_{b\b^bar}= 3.2 ^{+1.2}_{-1.1}(stat) ^{+1.4}_{-1.3}(syst) micro b.Comment: 432 authors, 6 pages text, 3 figures. Submitted to Phys. Rev. Lett. Plain text data tables for the points plotted in figures for this and previous PHENIX publications are (or will be) publicly available at http://www.phenix.bnl.gov/papers.htm

Improved Measurement of Double Helicity Asymmetry in Inclusive Midrapidity pi^0 Production for Polarized p+p Collisions at sqrt(s)=200 GeV

We present an improved measurement of the double helicity asymmetry for pi^0 production in polarized proton-proton scattering at sqrt(s) = 200 GeV employing the PHENIX detector at the Relativistic Heavy Ion Collider (RHIC). The improvements to our previous measurement come from two main factors: Inclusion of a new data set from the 2004 RHIC run with higher beam polarizations than the earlier run and a recalibration of the beam polarization measurements, which resulted in reduced uncertainties and increased beam polarizations. The results are compared to a Next to Leading Order (NLO) perturbative Quantum Chromodynamics (pQCD) calculation with a range of polarized gluon distributions.Comment: 389 authors, 4 pages, 2 tables, 1 figure. Submitted to Phys. Rev. D, Rapid Communications. Plain text data tables for the points plotted in figures for this and previous PHENIX publications are (or will be) publicly available at http://www.phenix.bnl.gov/papers.htm

Photoproduction of J/psi and of high mass e+e- in ultra-peripheral Au+Au collisions at sqrt(s_NN) = 200 GeV

We present the first measurement of photoproduction of J/psi and of two-photon production of high-mass e+e- pairs in electromagnetic (or ultra-peripheral) nucleus-nucleus interactions, using Au+Au data at sqrt(s_NN) = 200 GeV. The events are tagged with forward neutrons emitted following Coulomb excitation of one or both Au^{star} nuclei. The event sample consists of 28 events with m_{e+e-} > 2 GeV/c^2 with zero like-sign background. The measured cross sections at midrapidity of d\sigma / dy (J/psi + Xn, y=0) = 76 +/- 33 (stat) +/- 11 (syst) micro b and d^2\sigma/dm dy (e^+e^- + Xn, y=0) = 86 +/- 23 (stat) +/- 16 (syst) micro b/(GeV/c^2) for m_{e+e-} \in [2.0,2.8] GeV/c^2 are consistent with various theoretical predictions.Comment: 345 authors from 52 institutions, 20 pages, 4 figures, 3 tables. Submitted to Physics Letters B. Plain text data tables for the points plotted in figures for this and previous PHENIX publications are (or will be) publicly available at http://www.phenix.bnl.gov/papers.htm

Scaling properties of azimuthal anisotropy in Au+Au and Cu+Cu collisions at sqrt(s_NN) = 200 GeV

Detailed differential measurements of the elliptic flow for particles produced in Au+Au and Cu+Cu collisions at sqrt(s_NN) = 200 GeV are presented. Predictions from perfect fluid hydrodynamics for the scaling of the elliptic flow coefficient v_2 with eccentricity, system size and transverse energy are tested and validated. For transverse kinetic energies KE_T ~ m_T-m up to ~1 GeV, scaling compatible with the hydrodynamic expansion of a thermalized fluid is observed for all produced particles. For large values of KE_T, the mesons and baryons scale separately. A universal scaling for the flow of both mesons and baryons is observed for the full transverse kinetic energy range of the data when quark number scaling is employed. In both cases the scaling is more pronounced in terms of KE_T rather than transverse momentum.Comment: 422 authors from 58 institutions, 6 pages, 3 figures. Submitted to Physical Review Letters. Plain text data tables for the points plotted in figures for this and previous PHENIX publications are (or will be) publicly available at http://www.phenix.bnl.gov/papers.htm