The Box-Percentile Plot

A variant of the boxplot is proposed in which the sides contain the information of a percentile plot (which is equivalent to the empirical cumulative distribution function). Unlike boxplots, there is no question about how long to draw the whiskers, nor is there loss of information due to grouping. Side-by-side comparisons of distributions are especially effective. In spite of including more detail, the impact on statistically-untrained readers remains similar to that of traditional boxplots

Thermal tides in the Martian middle atmosphere as seen by the Mars Climate Sounder

The first systematic observations of the middle atmosphere of Mars (35–80km) with the Mars Climate Sounder (MCS) show dramatic patterns of diurnal thermal variation, evident in retrievals of temperature and water ice opacity. At the time of writing, the data set of MCS limb retrievals is sufficient for spectral analysis within a limited range of latitudes and seasons. This analysis shows that these thermal variations are almost exclusively associated with a diurnal thermal tide. Using a Martian general circulation model to extend our analysis, we show that the diurnal thermal tide dominates these patterns for all latitudes and all seasons

Pathways for the Photoreduction of Fumarate on ZnS

Semiconductor mineral particles can act as photocatalysts for organic redox reactions that occur enzymatically in modern biological metabolic pathways. Semiconductor mineral-mediated photocatalysis may have contributed to the prebiotic synthesis of organic acids on the early Earth, but assessing the plausibility of this hypothesis is impeded by the lack of knowledge about the mechanisms for light-driven organic redox reactions on mineral surfaces. We selected one step in the reverse tricarboxylic acid (rTCA) cycle, the reduction of fumarate to succinate, that has been shown to be photocatalyzed by zinc sulfide (ZnS). Using static and time-resolved optical emission and absorption spectroscopy, we studied the adsorption of fumarate and the rates and pathways for charge transfer. We find that ZnS transfers photoexcited electrons to bound and dissolved fumarate on a wide range of time scales but not to succinate, supporting the concept that ZnS mediated photoreduction of fumarate could have operated in oceans of the early Earth. Optical transient absorption (TA) spectroscopy identified a signature tentatively attributed to the fumarate radical anion that is stable for at least 8 ns, providing evidence that fumarate photoreduction under solar illumination levels occurs by successive photoelectron transfer. The model for electronic excitation, relaxation, and interfacial charge-transfer processes in ZnS provided here will inform all future studies of the photochemical reactions of this mineral

Infrared-Faint Radio Sources: A New Population of High-redshift Radio Galaxies

We present a sample of 1317 Infrared-Faint Radio Sources (IFRSs) that, for the first time, are reliably detected in the infrared, generated by cross-correlating the Wide-Field Infrared Survey Explorer (WISE) all-sky survey with major radio surveys. Our IFRSs are brighter in both radio and infrared than the first generation IFRSs that were undetected in the infrared by the Spitzer Space Telescope. We present the first spectroscopic redshifts of IFRSs, and find that all but one of the IFRSs with spectroscopy has z > 2. We also report the first X-ray counterparts of IFRSs, and present an analysis of radio spectra and polarization, and show that they include Gigahertz-Peaked Spectrum, Compact Steep Spectrum, and Ultra-Steep Spectrum sources. These results, together with their WISE infrared colours and radio morphologies, imply that our sample of IFRSs represents a population of radio-loud Active Galactic Nuclei at z > 2. We conclude that our sample consists of lower-redshift counterparts of the extreme first generation IFRSs, suggesting that the fainter IFRSs are at even higher redshift.Comment: 23 pages, 17 figures. Submitted to MNRA

Radio Galaxy Zoo: Cosmological Alignment of Radio Sources

We study the mutual alignment of radio sources within two surveys, FIRST and TGSS. This is done by producing two position angle catalogues containing the preferential directions of respectively $30\,059$ and $11\,674$ extended sources distributed over more than $7\,000$ and $17\,000$ square degrees. The identification of the sources in the FIRST sample was performed in advance by volunteers of the Radio Galaxy Zoo project, while for the TGSS sample it is the result of an automated process presented here. After taking into account systematic effects, marginal evidence of a local alignment on scales smaller than $2.5\deg$ is found in the FIRST sample. The probability of this happening by chance is found to be less than $2$ per cent. Further study suggests that on scales up to $1.5\deg$ the alignment is maximal. For one third of the sources, the Radio Galaxy Zoo volunteers identified an optical counterpart. Assuming a flat $\Lambda$CDM cosmology with $\Omega_m = 0.31, \Omega_\Lambda = 0.69$, we convert the maximum angular scale on which alignment is seen into a physical scale in the range $[19, 38]$ Mpc $h_{70}^{-1}$. This result supports recent evidence reported by Taylor and Jagannathan of radio jet alignment in the $1.4$ deg$^2$ ELAIS N1 field observed with the Giant Metrewave Radio Telescope. The TGSS sample is found to be too sparsely populated to manifest a similar signal

Radio galaxies and their magnetic fields out to z <= 3

We present polarisation properties at $1.4\,$GHz of two separate extragalactic source populations: passive quiescent galaxies and luminous quasar-like galaxies. We use data from the {\it Wide-Field Infrared Survey Explorer} data to determine the host galaxy population of the polarised extragalactic radio sources. The quiescent galaxies have higher percentage polarisation, smaller radio linear size, and $1.4\,$GHz luminosity of $6\times10^{21}<L_{\rm 1.4}<7\times10^{25}\,$W Hz$^{-1}$, while the quasar-like galaxies have smaller percentage polarisation, larger radio linear size at radio wavelengths, and a $1.4\,$GHz luminosity of $9\times10^{23}<L_{\rm 1.4}<7\times10^{28}\,$W Hz$^{-1}$, suggesting that the environment of the quasar-like galaxies is responsible for the lower percentage polarisation. Our results confirm previous studies that found an inverse correlation between percentage polarisation and total flux density at $1.4\,$GHz. We suggest that the population change between the polarised extragalactic radio sources is the origin of this inverse correlation and suggest a cosmic evolution of the space density of quiescent galaxies. Finally, we find that the extragalactic contributions to the rotation measures (RMs) of the nearby passive galaxies and the distant quasar-like galaxies are different. After accounting for the RM contributions by cosmological large-scale structure and intervening Mg\,{II} absorbers we show that the distribution of intrinsic RMs of the distant quasar-like sources is at most four times as wide as the RM distribution of the nearby quiescent galaxies, if the distribution of intrinsic RMs of the WISE-Star sources itself is at least several rad m$^{-2}$ wide.Comment: 12 pages, 8 figures, accepted for publication into MNRA

Programmed DNA destruction by miniature CRISPR-Cas14 enzymes.

CRISPR-Cas systems provide microbes with adaptive immunity to infectious nucleic acids and are widely employed as genome editing tools. These tools use RNA-guided Cas proteins whose large size (950 to 1400 amino acids) has been considered essential to their specific DNA- or RNA-targeting activities. Here we present a set of CRISPR-Cas systems from uncultivated archaea that contain Cas14, a family of exceptionally compact RNA-guided nucleases (400 to 700 amino acids). Despite their small size, Cas14 proteins are capable of targeted single-stranded DNA (ssDNA) cleavage without restrictive sequence requirements. Moreover, target recognition by Cas14 triggers nonspecific cutting of ssDNA molecules, an activity that enables high-fidelity single-nucleotide polymorphism genotyping (Cas14-DETECTR). Metagenomic data show that multiple CRISPR-Cas14 systems evolved independently and suggest a potential evolutionary origin of single-effector CRISPR-based adaptive immunity

Characterization of the hot Neptune GJ 436b with Spitzer and ground-based observations

We present Spitzer Space Telescope infrared photometry of a secondary eclipse of the hot Neptune GJ436b. The observations were obtained using the 8-micron band of the InfraRed Array Camera (IRAC). The data spanning the predicted time of secondary eclipse show a clear flux decrement with the expected shape and duration. The observed eclipse depth of 0.58 mmag allows us to estimate a blackbody brightness temperature of T_p = 717 +- 35 K at 8 microns. We compare this infrared flux measurement to a model of the planetary thermal emission, and show that this model reproduces properly the observed flux decrement. The timing of the secondary eclipse confirms the non-zero orbital eccentricity of the planet, while also increasing its precision (e = 0.14 +- 0.01). Additional new spectroscopic and photometric observations allow us to estimate the rotational period of the star and to assess the potential presence of another planet.Comment: Accepted for publication in A&A on 11/09/2007; 7 pages, 6 figure