NR4A3: A Key Nuclear Receptor in Vascular Biology, Cardiovascular Remodeling, and Beyond

Aneurisma aórtico abdominal; Aterosclerosis; Remodelación cardiovascularAneurisma aòrtic abdominal; Aterosclerosi; Remodelació cardiovascularAbdominal aortic aneurysm; Atherosclerosis; Cardiovascular remodelingThe mechanisms committed in the activation and response of vascular and inflammatory immune cells play a major role in tissue remodeling in cardiovascular diseases (CVDs) such as atherosclerosis, pulmonary arterial hypertension, and abdominal aortic aneurysm. Cardiovascular remodeling entails interrelated cellular processes (proliferation, survival/apoptosis, inflammation, extracellular matrix (ECM) synthesis/degradation, redox homeostasis, etc.) coordinately regulated by a reduced number of transcription factors. Nuclear receptors of the subfamily 4 group A (NR4A) have recently emerged as key master genes in multiple cellular processes and vital functions of different organs, and have been involved in a variety of high-incidence human pathologies including atherosclerosis and other CVDs. This paper reviews the major findings involving NR4A3 (Neuron-derived Orphan Receptor 1, NOR-1) in the cardiovascular remodeling operating in these diseases.This research was funded by the Spanish Ministerio de Ciencia e Innovación (RTI2018-094727-B-100), Instituto de Salud Carlos III (ISCIII; PI18/0919 and PI20/01649), the Agència de Gestió d’Ajuts Universitaris i de Recerca (AGAUR; 2017-SGR-00333). The study was cofounded by Fondo Europeo de Desarrollo Regional (FEDER), a way to make Europe. C.B.-S. is supported by a FPU fellowship (Ministerio de Ciencia, Innovación y Universidades)

Aplicació de tecnologies optimitzades al diagnòstic molecular de la malaltia de von Willebrand per a l’estudi de la relació genotip-fenotip

[cat] La Malaltia de von Willebrand (VWD) és la coagulopatia congènita més freqüent a la població general. Consisteix en una diàtesi hemorràgica causada per una deficiència qualitativa i/o quantitativa del factor de von Willebrand (VWF) que es transmet amb caràcter autosòmic dominant o, menys freqüentment, recessiu. El VWF és una glicoproteïna adhesiva present en plaquetes, cèl•lules endotelials i megacariòcits que té diferents funcions donat que participa en l’hemostàsia primària i col•labora al mateix temps en la secundària. És un mediador de l’adhesió de les plaquetes al subendotel•li en el lloc de la lesió vascular i transporta al FVIII, al que protegeix de la degradació proteolítica prematura. El gen del VWF (VWF) s’extén unes 178 kilobases en el genoma i conté un total de 52 exons, sent un dels gens més grans i complexos descrits en humans. Addicionalment existeixen una sèrie de factors que dificulten de manera considerable la caracterització molecular de la VWD i que han fet que la seqüenciació directa no s’hagi considerat el mètode de referència per al seu diagnòstic. En primer lloc, el VWF és un gen altament polimòrfic i, fins al moment, s’hi han descrit 102 SNPs (Build 132) en regió codificant, el que pot dificultar la identificació de les mutacions i, en segon lloc, existeix un pseudogèn parcial al cromosoma 22 d’aproximadament 30 kb molt homòleg (>96%) als exons 23-34 del VWF. Amb l’objectiu de facilitar l’anàlisi genètic de la VWD, s’ha dissenyat un procediment simplificat basat en la seqüenciació completa del gen, que s’ha utilitzat per identificar la mutació en un total de 40 famílies i demostra la seva validesa com a mètode rutinari de diagnòstic molecular. Amb l’aplicació d’aquest mètode s’han identificat un total de 58 mutacions (41 diferents), 19 de las quals no s’havien descrit prèviament a la literatura. Entre els diferents tipus de mutació responsables de la VWD, aquelles que modifiquen la regió codificant del gen tenen un clar efecte deleteri, però les conseqüències de les mutacions que afecten potencialment l’splicing (PSSM) són menys evidents. Amb l’objectiu d’estudiar l’efecte d’aquestes mutacions s’ha desenvolupat un mètode per a la seqüenciació completa del cDNA del VWF en leucòcits i plaquetes que ens ha permès revelar l’efecte de diverses PSSM. L’aparició de les plataformes de seqüenciació de nova generació (NGS), que són fins 200 vegades més ràpides i econòmiques que la seqüenciació tradicional, ha plantejat nous reptes en el diagnòstic molecular de les malalties hereditàries. Per això s’ha desenvolupat una nova estratègia d’amplificació del gen en un total de 14 PCRs llargues i hem adaptat el procediment desenvolupat prèviament per a la seqüenciació completa del VWF a les noves plataformes de NGS. Aquestes estratègies permetran l’anàlisi simultània d’un gran nombre de mostres de pacients i familiars de manera més ràpida i econòmica que per seqüenciació tradicional. Amb l’objectiu de recopilar tota la informació generada a partir del diagnòstic molecular dels pacients amb VWD i fer-la accessible, hem dissenyat un nou apartat dins d’Hemobase (registre de mutacions per a les Hemofílies A i B) dedicat a la VWD (www.vwf.hemobase.com). Aquesta pàgina d’accés lliure per Internet, conté un registre de les mutacions identificades en pacients amb VWD després de la seqüenciació directa del VWF. El registre permet realitzar cerques, relacionar qualsevol mutació amb la base de dades internacional i accedir directament a les publicacions corresponents. Es pretén que l’estudi molecular dels pacients permeti una millor comprensió dels mecanismes implicats en la fisiopatologia de la malaltia i ofereixi una visió més àmplia de l’epidemiologia molecular a la nostra població.[eng] Von Willebrand Disease (VWD) is the most frequent congenital coagulopathy in the general population. It has been proved to be particularly complex due to a series of factors that make difficult the molecular diagnostic of the disease: the von Willebrand Factor gene (VWF) is large and complex; it is very polymorphic; there is a partial pseudogene in chromosome 22 highly homologous (>96%) to a region of the VWF; and the existence of other genes implied in the disease cannot be discarded. All this set of difficulties causes that the molecular study of the VWD remains confined to basic investigation and the application to the clinical routine has been considerably delayed. With the aim to facilitate the genetic study of the VWD, we designed and optimized a procedure for direct sequencing of the VWF, that allowed us to study 40 families identifying 58 mutations (41 different), 19 of which were new. Among the different types of mutation that cause VWD, those affecting the coding region have frequently a clear deleterious effect; however, the consequences of the potential splice site mutations (PSSM) are less predictable. A method for the complete sequencing of the VWF cDNA in leukocytes and platelets has been developed allowing the elucidation of the effect of several PSSM studied. Next Generation Sequencing (NGS) platforms are faster and cheaper that the traditional sequencing. In order to take advantage of this new technology, we have developed an optimized strategy for the amplification of the VWF by LR-PCRs and we have tailored the previously developed short PCR procedure. The objective is to achieve high performance in the molecular characterization of VWD patients and relatives and to establish the basis for a large-scale molecular study approach. Finally, a database of the mutations identified, responsible for the pathology (www.vwf.hemobase.com), has been established in order to correlate molecular and clinical parameters. The development of suitable tools for the molecular diagnosis of VWD will significantly facilitate the clinical diagnosis and will guide the clinician towards the better therapeutic option

The Unravelling of the Genetic Architecture of Plasminogen Deficiency and its Relation to Thrombotic Disease

Although plasminogen is a key protein in fibrinolysis and several mutations in the plasminogen gene (PLG) have been identified that result in plasminogen deficiency, there are conflicting reports to associate it with the risk of thrombosis. Our aim was to unravel the genetic architecture of PLG in families with plasminogen deficiency and its relationship with spontaneous thrombotic events in these families. A total of 13 individuals from 4 families were recruited. Their genetic risk profile of thromboembolism was characterized using the Thrombo inCode kit. Only one family presented genetic risk of thromboembolism (homozygous carrier of F12 rs1801020 and F13A1 rs5985). The whole PLG was tested using Next Generation Sequencing (NGS) and 5 putative pathogenic mutations were found (after in silico predictions) and associated with plasminogen deficiency. Although we can not find genetic risk factors of thrombosis in 3 of 4 families, even the mutations associated with plasminogen deficiency do not cosegregated with thrombosis, we can not exclude plasminogen deficiency as a susceptibility risk factor for thrombosis, since thrombosis is a multifactorial and complex disease where unknown genetic risk factors, in addition to plasminogen deficiency, within these families may explain the thrombotic tendency

Next generation sequencing to dissect the genetic architecture of <i>KNG1</i> and <i>F11</i> loci using factor XI levels as an intermediate phenotype of thrombosis

<div><p>Venous thromboembolism is a complex disease with a high heritability. There are significant associations among Factor XI (FXI) levels and SNPs in the <i>KNG1</i> and <i>F11</i> loci. Our aim was to identify the genetic variation of <i>KNG1</i> and <i>F11</i> that might account for the variability of FXI levels. The <i>KNG1</i> and <i>F11</i> loci were sequenced completely in 110 unrelated individuals from the GAIT-2 (Genetic Analysis of Idiopathic Thrombophilia 2) Project using Next Generation Sequencing on an Illumina MiSeq. The GAIT-2 Project is a study of 935 individuals in 35 extended Spanish families selected through a proband with idiopathic thrombophilia. Among the 110 individuals, a subset of 40 individuals was chosen as a discovery sample for identifying variants. A total of 762 genetic variants were detected. Several significant associations were established among common variants and low-frequency variants sets in <i>KNG1</i> and <i>F11</i> with FXI levels using the PLINK and SKAT packages. Among these associations, those of rs710446 and five low-frequency variant sets in <i>KNG1</i> with FXI level variation were significant after multiple testing correction and permutation. Also, two putative pathogenic mutations related to high and low FXI levels were identified by data filtering and <i>in silico</i> predictions. This study of <i>KNG1</i> and <i>F11</i> loci should help to understand the connection between genotypic variation and variation in FXI levels. The functional genetic variants should be useful as markers of thromboembolic risk.</p></div

Novel Double Factor PGT strategy analyzing blastocyst stage embryos in a single NGS procedure

In families at risk from monogenic diseases affected offspring, it is fundamental the development of a suitable Double Factor Preimplantation Genetic Testing (DF-PGT) method for both single-gene analysis and chromosome complement screening. Aneuploidy is not only a major issue in advanced-maternal-age patients and balanced translocation carriers, but also the aneuploidy rate is extremely high in patients undergoing in vitro fertilization (IVF), even in young donors. To adequate NGS technology to the DF-PGT strategy four different whole genome amplification systems (Sureplex, MALBAC, and two multiple displacement amplification systems-MDA) were tested using TruSight One panel on cell lines and blastocyst trophectoderm biopsies-TE. Embryo cytogenetic status was analyzed by Nexus software. Sureplex and MALBAC DNA products were considered not suitable for PGT diagnosis due to inconsistent and poor results on Trusight one (TSO) panel. Results obtained with both MDA based methods (GEH-MDA and RG-MDA) were appropriate for direct mutation detection by TSO NGS platform. Nevertheless, RG-MDA amplification products showed better coverage and lower ADO rates than GEH-MDA. The present work also demonstrates that the same TSO sequencing data is suitable not only for the direct mutation detection, but also for the indirect mutation detection by linkage analysis of informative SNPs. The present work also demonstrates that Nexus software is competent for the detection of CNV by using with TSO sequencing data from RG-MDA products, allowing for the whole cytogenetic characterization of the embryos. In conclusion, successfully development of an innovative and promising DF-PGT strategy using TSO-NGS technology in TE biopsies, performed in-house in a single laboratory experience, has been done in the present work. Additional studies should be performed before it could be used as a diagnostic alternative in order to validate this approach for the detection of chromosomal aneuploidies

Role of multimeric analysis of von Willebrand factor (VWF) in von Willebrand disease (VWD) diagnosis: Lessons from the PCM-EVW-ES Spanish project - Fig 2

<p><b>Comparison between the diagnostic definition contribution of VWF:CB (in step “screening tests” [a]) and the multimeric analysis (MA) instead of VWF:CB first step, (step “screening tests” [b]).</b> A greater degree of efficiency was observed for MA (50.4% <i>versus</i> 33.1% for VWF:CB).</p