Ultrasonic particle sizing in aqueous suspensions of solid particles of unknown density

Estimates of particle size distributions (PSDs) in solid-in-liquid suspensions can be made on the basis of measurements of ultrasonic wave attenuation combined with a mathematical propagation model, which typically requires seven physical parameters to describe each phase of the mixture. The estimation process is insensitive to all of these except the density of the solid particles, which may not be known or difficult to measure. This paper proposes that an unknown density value is incorporated into the sizing computation as a free variable. It is shown that this leads to an accurate estimate of PSD, as well as the unknown density

Simulation of incoherent and coherent backscattered wave fields from cavities in a solid matrix

This article was published in the Journal of the Acoustical Society of America [© Acoustical Society of America. This article may be downloaded for personal use only. Any other use requires prior permission of the author and the Acoustical Society of America]. The article may be found at: http://dx.doi.org/10.1121/1.4763985This paper reports a study of the backscattered ultrasonic signal from a solid layer containing spherical cavities, to determine the conditions in which an effective medium model is a valid description of the response. The work is motivated by the need to model the response of porous composite materials for ultrasonic non-destructive evaluation (NDE) techniques. The numerical simulation predicts the response of a layer containing cavities at a single set of random locations, and compares it to the predicted response from a homogeneous layer with ensemble-averaged material properties (effective medium model). The study investigates the conditions in which the coherent (ensembleaveraged) response is obtained even from a single configuration of scatterers. Simulations are carried out for a range of cavity sizes and volume fractions. The deviation of the response from effective medium behavior is modeled, along with the trends as a function of cavity radius, volume fraction, and frequency, in order to establish an acceptability criterion for application of an effective medium model

A comparison of stochastic and effective medium approaches to the backscattered signal from a porous layer in a solid matrix

This article was published in the Journal of the Acoustical Society of America and is also available at: http://dx.doi.org/10.1121/1.3598461This paper reports a study of the backscattering behavior of a solid layer containing randomly spaced spherical cavities in the long wavelength limit. The motivation for the work arises from a need to model the responses of porous composite materials in ultrasonic NDE procedures. A comparison is made between models based on a summation over discrete scatterers, which show interesting emergent properties, and an integral formulation based on an ensemble average, and with a simple slab effective medium approximation. The similarities and differences between these three models are demonstrated. A simple quantitative criterion is established which sets the maximum frequency at which ensemble average or equivalent homogeneous medium models can represent echo signal generation in a porous layer for given interpore spacing, or equivalently, given pore size and concentration

Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake

The genomic causes and effects of divergent ecological selection during speciation are still poorly understood. Here, we report the discovery and detailed characterization of early-stage adaptive divergence of two cichlid fish ecomorphs in a small (700m diameter) isolated crater lake in Tanzania. The ecomorphs differ in depth preference, male breeding color, body shape, diet and trophic morphology. With whole genome sequences of 146 fish, we identify 98 clearly demarcated genomic ‘islands’ of high differentiation and demonstrate association of genotypes across these islands to divergent mate preferences. The islands contain candidate adaptive genes enriched for functions in sensory perception (including rhodopsin and other twilight vision associated genes), hormone signaling and morphogenesis. Our study suggests mechanisms and genomic regions that may play a role in the closely related mega-radiation of Lake Malawi.The work was funded by Royal Society-Leverhulme Trust Africa Awards AA100023 and AA130107 (M.J.G., B.P.N. and G.F.T.), a Wellcome Trust PhD studentship grant 097677/Z/11/Z (M.M.), Wellcome Trust grant WT098051 (S.S. and R.D.), Wellcome Trust and Cancer Research UK core support and a Wellcome Trust Senior Investigator Award (E.A.M.), a Leverhulme Trust Research Fellowship RF-2014-686 (M.J.G.), a University of Bristol Research Committee award (M.G.), a Bangor University Anniversary PhD studentship (to A.M.T.) and a Fisheries Society of the British Isles award (G.F.T.). Raw sequencing reads are in the SRA nucleotide archive: RAD sequencing (BioProject: PRJNA286304; accessions SAMN03768857 to SAMN03768912) and whole genome sequencing (BioProject PRJEB1254: sample accessions listed in Table S16). The RAD based phylogeny and alignments have been deposited in TreeBase (TB2:S18241). Whole genome variant calls in the VCF format, phylogenetic trees, and primer sequences for Sequenom genotyping are available from the Dryad Digital Repository (http://dx.doi.org/10.5061/dryad.770mc). RD declares his interests as a founder and non-executive director of Congenica Ltd., that he owns stock in Illumina from previous consulting, and is a scientific advisory board member of Dovetail Inc. We thank R. Schley for generating pharyngeal jaw data; S. Mzighani, J. Kihedu and staff of the Tanzanian Fisheries Research Institute for logistical support; A. Smith, H. Sungani, A. Shechonge, P. Parsons, J. Swanstrom, G. Cooke and J. Bridle for contributions to sampling and aquarium maintenance, the Sanger Institute sequencing core for DNA sequencing and Dr. H. Imai (Kyoto University) for the use of spectrometer in his laboratory.This is the author accepted manuscript. The final version is available from AAAS via http://dx.doi.org/10.1126/science.aac992

Evolution of the Reverse Shock Emission from SNR 1987A

We present new (2004 July) G750L and G140L Space Telescope Imaging Spectrograph (STIS) data of the H-alpha and Ly-alpha emission from supernova remnant (SNR) 1987A. With the aid of earlier data, from Oct 1997 to Oct 2002, we track the local evolution of Ly-alpha emission and both the local and global evolution of H-alpha emission. In addition to emission which we can clearly attribute to the surface of the reverse shock, we also measure comparable emission, in both H-alpha and Ly-alpha, which appears to emerge from supernova debris interior to the surface. New observations taken through slits positioned slightly eastward and westward of a central slit show a departure from cylindrical symmetry in the H-alpha surface emission. Using a combination of old and new observations, we construct a light curve of the total H-alpha flux, F, from the reverse shock, which has increased by a factor ~ 4 over about 8 years. However, due to large systematic uncertainties, we are unable to discern between the two limiting behaviours of the flux - F ~ t (self-similar expansion) and F ~ t^5 (halting of the reverse shock). Such a determination is relevant to the question of whether the reverse shock emission will vanish in less than about 7 years (Smith et al. 2005). Future deep, low- or moderate-resolution spectra are essential for accomplishing this task.Comment: 28 pages, 12 figures. Accepted by Ap

Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake.

The genomic causes and effects of divergent ecological selection during speciation are still poorly understood. Here we report the discovery and detailed characterization of early-stage adaptive divergence of two cichlid fish ecomorphs in a small (700 meters in diameter) isolated crater lake in Tanzania. The ecomorphs differ in depth preference, male breeding color, body shape, diet, and trophic morphology. With whole-genome sequences of 146 fish, we identified 98 clearly demarcated genomic "islands" of high differentiation and demonstrated the association of genotypes across these islands with divergent mate preferences. The islands contain candidate adaptive genes enriched for functions in sensory perception (including rhodopsin and other twilight-vision-associated genes), hormone signaling, and morphogenesis. Our study suggests mechanisms and genomic regions that may play a role in the closely related mega-radiation of Lake Malawi.The work was funded by Royal Society-Leverhulme Trust Africa Awards AA100023 and AA130107 (M.J.G., B.P.N. and G.F.T.), a Wellcome Trust PhD studentship grant 097677/Z/11/Z (M.M.), Wellcome Trust grant WT098051 (S.S. and R.D.), Wellcome Trust and Cancer Research UK core support and a Wellcome Trust Senior Investigator Award (E.A.M.), a Leverhulme Trust Research Fellowship RF-2014-686 (M.J.G.), a University of Bristol Research Committee award (M.G.), a Bangor University Anniversary PhD studentship (to A.M.T.) and a Fisheries Society of the British Isles award (G.F.T.). Raw sequencing reads are in the SRA nucleotide archive: RAD sequencing (BioProject: PRJNA286304; accessions SAMN03768857 to SAMN03768912) and whole genome sequencing (BioProject PRJEB1254: sample accessions listed in Table S16). The RAD based phylogeny and alignments have been deposited in TreeBase (TB2:S18241). Whole genome variant calls in the VCF format, phylogenetic trees, and primer sequences for Sequenom genotyping are available from the Dryad Digital Repository (http://dx.doi.org/10.5061/dryad.770mc). RD declares his interests as a founder and non-executive director of Congenica Ltd., that he owns stock in Illumina from previous consulting, and is a scientific advisory board member of Dovetail Inc. We thank R. Schley for generating pharyngeal jaw data; S. Mzighani, J. Kihedu and staff of the Tanzanian Fisheries Research Institute for logistical support; A. Smith, H. Sungani, A. Shechonge, P. Parsons, J. Swanstrom, G. Cooke and J. Bridle for contributions to sampling and aquarium maintenance, the Sanger Institute sequencing core for DNA sequencing and Dr. H. Imai (Kyoto University) for the use of spectrometer in his laboratory.This is the author accepted manuscript. The final version is available from AAAS via http://dx.doi.org/10.1126/science.aac992

Acoustic scattering by a spherical obstacle: Modification to the analytical long-wavelength solution for the zero-order coefficient

This article was published in the Journal of the Acoustical Society of America and is also available at: http://dx.doi.org/10.1121/1.3543967Classical long wavelength approximate solutions to the scattering of acoustic waves by a spherical liquid particle suspended in a liquid (an emulsion) show small but significant differences from full solutions at very low kca (typically kca < 0.01) and above at kca > 0.1, where kc is the compressional wavenumber and a the particle radius. These differences may be significant in the context of dispersed particle size estimates based on compression wave attenuation measurements. This paper gives an explanation of how these differences arise from approximations based on the significance of terms in the modulus of the complex zero-order partial wave coefficient, A0. It is proposed that a more accurate approximation results from considering the terms in the real and imaginary parts of the coefficient, separately