Natural and Fukushima-derived radioactivity in macroalgae and mussels along the Japanese shoreline

Following the failure of the nuclear power plant in Fukushima Prefecture in March 2011, peer-reviewed publications describing radioactivity levels in organisms inhabiting coastal environments are scarce. This paper reports on elevated levels of 134Cs and 137Cs in macroalgae and mussels (up to ~ 800 Bq kg−1 dry wt.) in June 2011. Cs concentrations in biota sampled in early June 2011 were higher in areas south of Fukushima than sampled in the last third of the month north of Fukushima. Activity concentrations from 134+137Cs in organisms south of Fukushima were comparable to or lower than those from the naturally occurring 40K in the same samples. While 210Pb and 210Po concentrations were generally lower than these other radionuclides, 210Po as an α-emitter is more significant from a radiological viewpoint than γ-emitters as it can inflict greater biological damage. By applying known bioconcentration factors of Cs in biota, measured biota concentrations of Cs were also used to estimate Cs concentrations in coastal seawater to be in the range of 102–103 Bq m−3. These estimates show that, 3 months after the accident and maximal release of radioactive Cs, levels of Cs persisted in coastal waters, although at levels that were two orders of magnitude lower than at the time of release. These June coastal seawater Cs levels were four orders of magnitude above Cs concentrations off Japan prior to the Fukushima disaster

Fluxes of the 238U-series isotopes in the industrial production of dicalcium phosphate and the radiological impact due to the incorporation to poultry diets

La roca de fosfato se utiliza como fuente para la producción de suplementos alimenticios, como en forma de fosfato dicálcico (DCP), que es un suministro de calcio y fósforo para animales domésticos

A Heuristic Based on the Intrinsic Dimensionality for Reducing the Number of Cyclic DTW Comparisons in Shape Classification and Retrieval Using AESA

Cyclic Dynamic Time Warping (CDTW) is a good dissimilarity of shape descriptors of high dimensionality based on contours, but it is computationally expensive. For this reason, to perform recognition tasks, a method to reduce the number of comparisons and avoid an exhaustive search is convenient. The Approximate and Eliminate Search Algorithm (AESA) is a relevant indexing method because of its drastic reduction of comparisons, however, this algorithm requires a metric distance and that is not the case of CDTW. In this paper, we introduce a heuristic based on the intrinsic dimensionality that allows to use CDTW and AESA together in classification and retrieval tasks over these shape descriptors. Experimental results show that, for descriptors of high dimensionality, our proposal is optimal in practice and significantly outperforms an exhaustive search, which is the only alternative for them and CDTW in these tasks

Marine radioecology after the Fukushima Dai-ichi nuclear accident : are we better positioned to understand the impact of radionuclides in marine ecosystems?

© The Author(s), 2017. This is the author's version of the work. It is posted here under a nonexclusive, irrevocable, paid-up, worldwide license granted to WHOI. It is made available for personal use, not for redistribution. The definitive version was published in Science of The Total Environment 618 (2017): 80-92, doi:10.1016/j.scitotenv.2017.11.005.This paper focuses on how a community of researchers under the COMET (CO-ordination and iMplementation of a pan European projecT for radioecology) project has improved the capacity of marine radioecology to understand at the process level the behaviour of radionuclides in the marine environment, uptake by organisms and the resulting doses after the Fukushima Dai-ichi nuclear accident occurred in 2011. We present new radioecological understanding of the processes involved, such as the interaction of waterborne radionuclides with suspended particles and sediments or the biological uptake and turnover of radionuclides, which have been better quantified and mathematically described. We demonstrate that biokinetic models can better represent radionuclide transfer to biota in non-equilibrium situations, bringing more realism to predictions, especially when combining physical, chemical and biological interactions that occur in such an open and dynamic environment as the ocean. As a result, we are readier now than we were before the FDNPP accident in terms of having models that can be applied to dynamic situations. The paper concludes with our vision for marine radioecology as a fundamental research discipline and we present a strategy for our discipline at the European and international levels. The lessons learned are presented along with their possible applicability to assess/reduce the environmental consequences of future accidents to the marine environment and guidance for future research, as well as to assure sustainability of marine radioecology in Europe and globally. This guidance necessarily reflects on why and where further research funding is needed, signalling the way for future investigations.The research leading to this paper has received funding from the European Union's seventh Framework programme (FP7/2007-2013) under grant agreement No. is 604974 (Projects within COMET: Marine Initial Research Activity and The impact of recent releases from the Fukushima nucleaR Accident on the Marine Environment - FRAME). Sampling off Japan has been supported by the Gordon and Betty Moore Foundation, the Deerbrook Charitable Trust and contributions to the WHOI Centre for Marine and Environmental Radioactivity. We acknowledge the JSPS KAKENHI Grant-in-Aid for Scientific Research on Innovative Areas Grant No. 24110005 for supporting in part the activities during the research cruises to the FDNPP area

Influence of Syntectonic sedimentation and décollement rheology on the geometry and evolution of orogenic wedges: analog modelling of the Kuqa Fold-and-thrust belt (NW China)

Contractional deformation in the outer parts of fold‐and‐thrust belts is in part controlled by the presence of syntectonic sediments and multiple décollements (e.g., the Apennines, the Appalachians, the Pyrenees, the Zagros, or the Sub‐Andean and Kuqa fold‐and‐thrust belts). To better understand the influence of these parameters in the kinematic evolution of fold‐and‐thrust systems, we carried out an experimental study including four 3‐D sandbox models inspired by one of the previously mentioned prototypes, the Kuqa fold‐and‐thrust belt. This belt contains two décollements: a weak synorogenic salt layer and a deeper, preorogenic, and frictionless décollement (i.e., organic‐rich shales) showing along strike variations of rheology. The experimental results show that increasing synkinematic sedimentation rate (i) generates a progressive change from distributed to localized deformation and (ii) delays the development of frontal contractional structures detached on the salt, favoring the formation and reactivation of more hinterland thrusts and backthrusts. With respect to the rheology, our study reveals that as the viscosity of the prekinematic décollement increases, (i) the deformation propagates more slowly toward the foreland, and (ii) the underlying thrust stack becomes broader and lower and has a gentler thrust taper angle. The rheology of the prekinematic décollement defines the distribution and geometry of the structures detached on it that in turn influence the development of overlying, salt‐detached structures. Subsalt structures can (i) determine the areal extent of the salt and therefore of any fold‐and‐thrust system detached on it and (ii) hamper or even prevent the progressive foreland propagation of deformation above the salt

Annual post-market environmental monitoring (PMEM) report on the cultivation of genetically modified maize MON 810 in 2014 from Monsanto Europe S.A.

Following a request from the European Commission, the Panel on Genetically Modified Organisms of the European Food Safety Authority (GMO Panel) assessed the annual post-market environmental monitoring (PMEM) report for the 2014 growing season of maize MON 810 provided by Monsanto Europe S.A. The GMO Panel concludes that the insect resistance monitoring data do not indicate a decrease in susceptibility of field Iberian populations of corn borers to the Cry1Ab protein over the 2014 season. However, as the methodology for insect resistance monitoring remained unchanged compared to previous PMEM reports, the GMO Panel reiterates its previous recommendations for improvement of the insect resistance management plan. The GMO Panel considers that the farmer alert system to report complaints regarding product performance could complement the information obtained from the laboratory bioassays, but encourages the consent holder to provide more information in order to be in a position to appraise its usefulness. The data on general surveillance activities do not indicate any unanticipated adverse effects on human and animal health or the environment arising from the cultivation of maize MON 810 cultivation in 2014. The GMO Panel reiterates its previous recommendations to improve the methodology for the analysis of farmer questionnaires and conduct of the literature review in future annual PMEM reports on maize MON 810. The GMO Panel urges the consent holder to consider how to make best use of the information recorded in national registers to optimise sampling for farmer questionnaires, and requests to continue reviewing and discussing relevant scientific publications on possible adverse effects of maize MON 810 on rove beetles. Also, the GMO Panel encourages relevant parties to continue developing a methodological framework to use existing networks in the broader context of environmental monitorin

Modulating signaling networks by CRISPR/Cas9-mediated transposable element insertion

In a recent past, transposable elements (TEs) were referred to as selfish genetic components only capable of copying themselves with the aim of increasing the odds of being inherited. Nonetheless, TEs have been initially proposed as positive control elements acting in synergy with the host. Nowadays, it is well known that TE movement into host genome comprises an important evolutionary mechanism capable of increasing the adaptive fitness. As insights into TE functioning are increasing day to day, the manipulation of transposition has raised an interesting possibility of setting the host functions, although the lack of appropriate genome engineering tools has unpaved it. Fortunately, the emergence of genome editing technologies based on programmable nucleases, and especially the arrival of a multipurpose RNA-guided Cas9 endonuclease system, has made it possible to reconsider this challenge. For such purpose, a particular type of transposons referred to as miniature inverted-repeat transposable elements (MITEs) has shown a series of interesting characteristics for designing functional drivers. Here, recent insights into MITE elements and versatile RNA-guided CRISPR/Cas9 genome engineering system are given to understand how to deploy the potential of TEs for control of the host transcriptional activity.Fil: Vaschetto, Luis Maria Benjamin. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Diversidad y Ecología Animal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto de Diversidad y Ecología Animal; Argentina. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas, Físicas y Naturales. Cátedra de Diversidad Animal I; Argentin

Advanced cell-based modeling of the royal disease: characterization of the mutated F9 mRNA

Essentials The Royal disease (RD) is a form of hemophilia B predicted to be caused by a splicing mutation. We generated an iPSC-based model of the disease allowing mechanistic studies at the RNA level. F9 mRNA analysis in iPSC-derived hepatocyte-like cells showed the predicted abnormal splicing. Mutated F9 mRNA level was very low but we also found traces of wild type transcripts. SUMMARY: Background The royal disease is a form of hemophilia B (HB) that affected many descendants of Queen Victoria in the 19th and 20th centuries. It was found to be caused by the mutation F9 c.278-3A>G. Objective To generate a physiological cell model of the disease and to study F9 expression at the RNA level. Methods Using fibroblasts from skin biopsies of a previously identified hemophilic patient bearing the F9 c.278-3A>G mutation and his mother, we generated induced pluripotent stem cells (iPSCs). Both the patient's and mother's iPSCs were differentiated into hepatocyte-like cells (HLCs) and their F9 mRNA was analyzed using next-generation sequencing (NGS). Results and Conclusion We demonstrated the previously predicted aberrant splicing of the F9 transcript as a result of an intronic nucleotide substitution leading to a frameshift and the generation of a premature termination codon (PTC). The F9 mRNA level in the patient's HLCs was significantly reduced compared with that of his mother, suggesting that mutated transcripts undergo nonsense-mediated decay (NMD), a cellular mechanism that degrades PTC-containing mRNAs. We also detected small proportions of correctly spliced transcripts in the patient's HLCs, which, combined with genetic variability in splicing and NMD machineries, could partially explain some clinical variability among affected members of the European royal families who had lifespans above the average. This work allowed the demonstration of the pathologic consequences of an intronic mutation in the F9 gene and represents the first bona fide cellular model of HB allowing the study of rare mutations at the RNA level

The Tnt1 Retrotransposon Escapes Silencing in Tobacco, Its Natural Host

Retrotransposons' high capacity for mutagenesis is a threat that genomes need to control tightly. Transcriptional gene silencing is a general and highly effective control of retrotransposon expression. Yet, some retrotransposons manage to transpose and proliferate in plant genomes, suggesting that, as shown for plant viruses, retrotransposons can escape silencing. However no evidence of retrotransposon silencing escape has been reported. Here we analyze the silencing control of the tobacco Tnt1 retrotransposon and report that even though constructs driven by the Tnt1 promoter become silenced when stably integrated in tobacco, the endogenous Tnt1 elements remain active. Silencing of Tnt1-containing transgenes correlates with high DNA methylation and the inability to incorporate H2A.Z into their promoters, whereas the endogenous Tnt1 elements remain partially methylated at asymmetrical positions and incorporate H2A.Z upon induction. Our results show that the promoter of Tnt1 is a target of silencing in tobacco, but also that endogenous Tnt1 elements can escape this control and be expressed in their natural host