Quantum Monte Carlo calculations of neutron-alpha scattering

We describe a new method to treat low-energy scattering problems in few-nucleon systems, and we apply it to the five-body case of neutron-alpha scattering. The method allows precise calculations of low-lying resonances and their widths. We find that a good three-nucleon interaction is crucial to obtain an accurate description of neutron-alpha scattering.Comment: 4 pages, 2 figures, submitted to Physical Review Letter

Big Bluestem and Indiangrass from Remnant Prairies: Plant Biomass and Adaptation

Big bluestem (Andropogon gerardii Vitman) and indiangrass (Sorghastrum nutans L.) were collected from remnant Midwestern prairies and evaluated as individual prairie accessions in replicated space-transplanted nurseries near Mead, NE, Ames, IA, and West Lafayette, IN. The objective was to determine the extent of differences among the accessions for plant biomass (g plant−1) and biomass quality, the extent of strain x location interactions, and the relationship between geographical locations of collection sites and evaluation locations for plant biomass production. Plant biomass has been used previously as a measure of plant adaptation and fitness. Big bluestem and indiangrass accessions differed significantly (P \u3c 0.05) for plant biomass at all locations. Strain mean squares for plant biomass were 10´ greater than strain x location effects for big bluestem and were not significant for indiangrass, indicating a general lack of specific adaptation across the Midwest. Accessions were identified that had high plant biomass at all three locations. These accessions should have value in breeding programs and for use in revegetation. Regression analyses were used to test the effect of north-to-south, east-to-west, and direct distances between the collection sites and the evaluation locations on plant biomass. The most important distance effects were the north-to-south effects, which were significant for plant biomass for big bluestem at all locations and for indiangrass at West Lafayette. Moving northern big bluestem accessions south resulted in reduced plant biomass, with the opposite effect when southern accessions were moved north. Results support the regional adaptation of the best accessions and cultivars for these grasses

Registration of ‘Homestead’ Canada Wildrye

‘Homestead’ (Reg. No. CV-255, PI 655522) Canada wildrye (Elymus canadensis L.) was developed cooperatively by USDA-ARS and the University of Nebraska and was released in 2008 for use in the Great Plains and the Midwest USA, a region for which no adapted cultivars were previously available. It was developed by means of the Ecotype Selection Breeding System from a collection made in a remnant prairie in Eastern Nebraska USA. Homestead, which was tested as NE3, is adapted to Plant Adaptation Region (PAR) 251-5 (Temperate Prairie Parkland–Plant Hardiness Zone 5), which is its origin, and in which it has been evaluated in both space-transplanted and sward trials. This region is equivalent to USDA Plant Hardiness Zone 5 of the tallgrass-prairie ecoregion of the Midwest, USA. When grown in its area of adaptation, it produces more forage than the previously available, unadapted cultivar of the species and its forage has higher in vitro dry matter digestibility than another adapted experimental strain to which it was compared in sward forage yield trials. Its primary use will be as a native cool-season grass component of conservation, roadside, and grassland seeding mixtures

Modern theories of low-energy astrophysical reactions

We summarize recent ab initio studies of low-energy electroweak reactions of astrophysical interest, relevant for both big bang nucleosynthesis and solar neutrino production. The calculational methods include direct integration for np radiative and pp weak capture, correlated hyperspherical harmonics for reactions of A=3,4 nuclei, and variational Monte Carlo for A=6,7 nuclei. Realistic nucleon-nucleon and three-nucleon interactions and consistent current operators are used as input.Comment: 29 pages, 4 figure

Genetic polymorphisms in the catechol estrogen metabolism pathway and breast cancer risk

Background: This study investigated whether single nucleotide polymorphisms (SNPs) in genes within the catechol estrogen metabolism pathway altered the risk of breast cancer alone or in combination, as well as whether menopausal hormone therapy (HT) modified the effect of these SNPs on breast cancer risk. Methods: In a population-based case-control study of breast cancer, 891 cases and 878 controls were genotyped for six functional SNPs in the COMT, CYP1B1, GSTM1, GSTP1, and GSTT1 genes. Results: Women homozygous with the T allele in CYP1B1*2 (Ser119; rs1056827) were at 1.69 (95% confidence interval [CI]: 1.17-2.46) times the risk of women homozygous with the G allele; women homozygous with the G allele in GSTP1 (Val105; rs1695) were at 0.73 (95% CI: 0.54-0.99) times the risk of breast cancer compared to women homozygous with the A allele. No other SNPs tested were associated with breast cancer to any appreciable degree. Potential gene-gene and gene-HT interactions were investigated. Conclusion: With the exception of GSTP1 and possibly CYP1B1*2, our findings do not provide support for the role of genetic variation in the catechol estrogen metabolism pathway and breast cancer risk in post-menopausal women

TgIF2K-B Is an eIF2α Kinase in Toxoplasma gondii That Responds to Oxidative Stress and Optimizes Pathogenicity

Toxoplasma gondii is an obligate intracellular parasite that persists in its vertebrate hosts in the form of dormant tissue cysts, which facilitate transmission through predation. The parasite must strike a balance that allows it to disseminate throughout its host without killing it, which requires the ability to properly counter host cell defenses. For example, oxidative stress encountered by Toxoplasma is suggested to impair parasite replication and dissemination. However, the strategies by which Toxoplasma mitigates oxidative stress are not yet clear. Among eukaryotes, environmental stresses induce the integrated stress response via phosphorylation of a translation initiation factor, eukaryotic initiation factor 2 (eIF2). Here, we show that the Toxoplasma eIF2 kinase TgIF2K-B is activated in response to oxidative stress and affords protection. Knockout of the TgIF2K-B gene, Δtgif2k-b, disrupted parasite responses to oxidative stresses and enhanced replication, diminishing the ability of the parasite to differentiate into tissue cysts. In addition, parasites lacking TgIF2K-B exhibited resistance to activated macrophages and showed greater virulence in an in vivo model of infection. Our results establish that TgIF2K-B is essential for Toxoplasma responses to oxidative stress, which are important for the parasite's ability to establish persistent infection in its host.IMPORTANCE Toxoplasma gondii is a single-celled parasite that infects nucleated cells of warm-blooded vertebrates, including one-third of the human population. The parasites are not cleared by the immune response and persist in the host by converting into a latent tissue cyst form. Development of tissue cysts can be triggered by cellular stresses, which activate a family of TgIF2 kinases to phosphorylate the eukaryotic translation initiation factor TgIF2α. Here, we establish that the TgIF2 kinase TgIF2K-B is activated by oxidative stress and is critical for maintaining oxidative balance in the parasite. Depletion of TgIF2K-B alters gene expression, leading to accelerated growth and a diminished ability to convert into tissue cysts. This study establishes that TgIF2K-B is essential for the parasite's oxidative stress response and its ability to persist in the host as a latent infection

Stromal architecture directs early dissemination in pancreatic ductal adenocarcinoma

Pancreatic ductal adenocarcinoma (PDA) is an extremely metastatic and lethal disease. Here, in both murine and human PDA, we demonstrate that extracellular matrix architecture regulates cell extrusion and subsequent invasion from intact ductal structures through tumor-associated collagen signatures (TACS). This results in early dissemination from histologically premalignant lesions and continual invasion from well-differentiated disease, and it suggests TACS as a biomarker to aid in the pathologic assessment of early disease. Furthermore, we show that pancreatitis results in invasion-conducive architectures, thus priming the stroma prior to malignant disease. Analysis in potentially novel microfluidic-derived microtissues and in vivo demonstrates decreased extrusion and invasion following focal adhesion kinase (FAK) inhibition, consistent with decreased metastasis. Thus, data suggest that targeting FAK or strategies to reengineer and normalize tumor microenvironments may have roles not only in very early disease, but also for limiting continued dissemination from unresectable disease. Likewise, it may be beneficial to employ stroma-targeting strategies to resolve precursor diseases such as pancreatitis in order to remove stromal architectures that increase risk for early dissemination

Discordant regulation of eIF2 kinase GCN2 and mTORC1 during nutrient stress

Appropriate regulation of the Integrated stress response (ISR) and mTORC1 signaling are central for cell adaptation to starvation for amino acids. Halofuginone (HF) is a potent inhibitor of aminoacylation of tRNAPro with broad biomedical applications. Here, we show that in addition to translational control directed by activation of the ISR by general control nonderepressible 2 (GCN2), HF increased free amino acids and directed translation of genes involved in protein biogenesis via sustained mTORC1 signaling. Deletion of GCN2 reduced cell survival to HF whereas pharmacological inhibition of mTORC1 afforded protection. HF treatment of mice synchronously activated the GCN2-mediated ISR and mTORC1 in liver whereas Gcn2-null mice allowed greater mTORC1 activation to HF, resulting in liver steatosis and cell death. We conclude that HF causes an amino acid imbalance that uniquely activates both GCN2 and mTORC1. Loss of GCN2 during HF creates a disconnect between metabolic state and need, triggering proteostasis collapse

Detection, Mapping, and Quantification of Single Walled Carbon Nanotubes in Histological Specimens with Photoacoustic Microscopy

Contains fulltext : 110845.pdf (publisher's version ) (Open Access)AIMS: In the present study, the efficacy of multi-scale photoacoustic microscopy (PAM) was investigated to detect, map, and quantify trace amounts [nanograms (ng) to micrograms (microg)] of SWCNTs in a variety of histological tissue specimens consisting of cancer and benign tissue biopsies (histological specimens from implanted tissue engineering scaffolds). MATERIALS AND METHODS: Optical-resolution (OR) and acoustic-resolution (AR)--Photoacoustic microscopy (PAM) was employed to detect, map and quantify the SWCNTs in a variety of tissue histological specimens and compared with other optical techniques (bright-field optical microscopy, Raman microscopy, near infrared (NIR) fluorescence microscopy). RESULTS: Both optical-resolution and acoustic-resolution PAM, allow the detection and quantification of SWCNTs in histological specimens with scalable spatial resolution and depth penetration. The noise-equivalent detection sensitivity to SWCNTs in the specimens was calculated to be as low as approximately 7 pg. Image processing analysis further allowed the mapping, distribution, and quantification of the SWCNTs in the histological sections. CONCLUSIONS: The results demonstrate the potential of PAM as a promising imaging technique to detect, map, and quantify SWCNTs in histological specimens, and could complement the capabilities of current optical and electron microscopy techniques in the analysis of histological specimens containing SWCNTs