Slide Preparation for DNA Attachment for use in Optical Tweezers

Our research team, ISLAND CURE, is a multidisciplinary team of professors and undergraduate students with the goal to design and build instruments to make biological measurements on a limited budget. One of the apparatuses we are designing, is optical tweezers, which are a Nobel Prize-winning technology capable of trapping microscopic and sub-microscopic particles using a laser beam. Using a 1064 nm beam, we will trap a single strand of DNA using beads and this will enable us to exert minute forces upon the DNA. This experiment will give us a better understanding of the forces on damaged DNA; specifically, the damages that lead to mutations and cancer. With this knowledge our goal is to be able to provide insight into mutagenesis and cancer development, and ideally how to treat and prevent them. Our job was to find a way to prepare a slide in which a single piece of DNA can attach to be used in the inverted microscope setup

Supporting a Student with Asperger’s Syndrome: Perspectives From The Student, Sibling, and Non-Familial Tutor

When working with a student with Asperger’s syndrome, tutoring strategies can vary depending on the person implementing them. The purpose of the presentation is to discuss current research in regards to successful tutoring strategies for students with Asperger’s syndrome, and which of these strategies have been successful in the high school student with Asperger’s syndrome’s academic endeavors. Dr. Shu-Fei Tsai, a faculty member of CWU, provided training on the use of self-management skills. Both the sibling and the tutor have been assisting the student with Asperger’s syndrome to implement self-management skills to track his academic work. The outcomes demonstrated that the student improved his assignment completion and academic performance through using self-management skills. The sibling and the tutor will discuss their experience of helping the student with Asperger’s syndrome. Furthermore, the student will share his voice of using these self-management abilities

Concept Design for Optical Tweezers to be used in DNA Research

Optical tweezers are a Nobel Prize-winning technology capable of trapping microscopic and sub-microscopic particles using a laser beam. There are several new and useful applications available with the use of optical tweezers. A single optical tweezers set up can cost upwards of two hundred thousand dollars; however, we have designed a cost effective set up to study damaged DNA for under thirty thousand dollars. Using this design, we applied for a grant that would give us the necessary funds to build this set up. The building process itself will be very useful hands-on time learning about the laser set up. In addition, our optical tweezers would be integrated into undergraduate classes

3D dSTORM imaging reveals novel detail of ryanodine receptor localization in rat cardiac myocytes

Cardiomyocyte contraction is dependent on Ca2+ release from ryanodine receptors (RyRs). However, the precise localization of RyRs remains unknown, due to shortcomings of imaging techniques which are diffraction limited or restricted to 2D. We aimed to determine the 3D nanoscale organization of RyRs in rat cardiomyocytes by employing direct stochastic optical reconstruction microscopy (dSTORM) with phase ramp technology. Initial observations at the cell surface showed an undulating organization of RyR clusters, resulting in their frequent overlap in the z‐axis and obscured detection by 2D techniques. Non‐overlapping clusters were imaged to create a calibration curve for estimating RyR number based on recorded fluorescence blinks. Employing this method at the cell surface and interior revealed smaller RyR clusters than 2D estimates, as erroneous merging of axially aligned RyRs was circumvented. Functional groupings of RyR clusters (Ca2+ release units, CRUs), contained an average of 18 and 23 RyRs at the surface and interior, respectively, although half of all CRUs contained only a single ‘rogue’ RyR. Internal CRUs were more tightly packed along z‐lines than surface CRUs, contained larger and more numerous RyR clusters, and constituted ∼75% of the roughly 1 million RyRs present in an average cardiomyocyte. This complex internal 3D geometry was underscored by correlative imaging of RyRs and t‐tubules, which enabled quantification of dyadic and non‐dyadic RyR populations. Mirroring differences in CRU size and complexity, Ca2+ sparks originating from internal CRUs were of longer duration than those at the surface. These data provide novel, nanoscale insight into RyR organization and function across cardiomyocytes

Searchlight-based multi-voxel pattern analysis of fMRI by cross-validated MANOVA

Multi-voxel pattern analysis (MVPA) is a fruitful and increasingly popular complement to traditional univariate methods of analyzing neuroimaging data. We propose to replace the standard ‘decoding’ approach to searchlight-based MVPA, measuring the performance of a classifier by its accuracy, with a method based on the multivariate form of the general linear model. Following the well-established methodology of multivariate analysis of variance (MANOVA), we define a measure that directly characterizes the structure of multi-voxel data, the pattern distinctness D. Our measure is related to standard multivariate statistics, but we apply cross-validation to obtain an unbiased estimate of its population value, independent of the amount of data or its partitioning into ‘training’ and ‘test’ sets. The estimate can therefore serve not only as a test statistic, but also as an interpretable measure of multivariate effect size. The pattern distinctness generalizes the Mahalanobis distance to an arbitrary number of classes, but also the case where there are no classes of trials because the design is described by parametric regressors. It is defined for arbitrary estimable contrasts, including main effects (pattern differences) and interactions (pattern changes). In this way, our approach makes the full analytical power of complex factorial designs known from univariate fMRI analyses available to MVPA studies. Moreover, we show how the results of a factorial analysis can be used to obtain a measure of pattern stability, the equivalent of ‘cross-decoding’

Earliest Holocene south Greenland ice sheet retreat within its late Holocene extent

Early Holocene summer warmth drove dramatic Greenland ice sheet (GIS) retreat. Subsequent insolation-driven cooling caused GIS margin readvance to late Holocene maxima, from which ice margins are now retreating. We use ¹⁰Be surface exposure ages from four locations between 69.4°N and 61.2°N to date when in the early Holocene south to west GIS margins retreated to within these late Holocene maximum extents. We find that this occurred at 11.1 ± 0.2 ka to 10.6 ± 0.5 ka in south Greenland, significantly earlier than previous estimates, and 6.8 ± 0.1 ka to 7.9 ± 0.1 ka in southwest to west Greenland, consistent with existing ¹⁰Be ages. At least in south Greenland, these ¹⁰Be ages likely provide a minimum constraint for when on a multicentury timescale summer temperatures after the last deglaciation warmed above late Holocene temperatures in the early Holocene. Current south Greenland ice margin retreat suggests that south Greenland may have now warmed to or above earliest Holocene summer temperatures.Keywords: Early Holocene climate, Greenland ice sheet, Cosmogenic datin

Nudging towards COVID-19 and influenza vaccination uptake in medically at-risk children : EPIC study protocol of randomised controlled trials in Australian paediatric outpatient clinics

Introduction: Children with chronic medical diseases are at an unacceptable risk of hospitalisation and death from influenza and SARS-CoV-2 infections. Over the past two decades, behavioural scientists have learnt how to design non-coercive ‘nudge’ interventions to encourage positive health behaviours. Our study aims to evaluate the impact of multicomponent nudge interventions on the uptake of COVID-19 and influenza vaccines in medically at-risk children. Methods and analyses: Two separate randomised controlled trials (RCTs), each with 1038 children, will enrol a total of approximately 2076 children with chronic medical conditions who are attending tertiary hospitals in South Australia, Western Australia and Victoria. Participants will be randomly assigned (1:1) to the standard care or intervention group. The nudge intervention in each RCT will consist of three text message reminders with four behavioural nudges including (1) social norm messages, (2) different messengers through links to short educational videos from a paediatrician, medically at-risk child and parent and nurse, (3) a pledge to have their child or themselves vaccinated and (4) information salience through links to the current guidelines and vaccine safety information. The primary outcome is the proportion of medically at-risk children who receive at least one dose of vaccine within 3 months of randomisation. Logistic regression analysis will be performed to determine the effect of the intervention on the probability of vaccination uptake. Ethics and dissemination: The protocol and study documents have been reviewed and approved by the Women’s and Children’s Health Network Human Research Ethics Committee (HREC/22/WCHN/2022/00082). The results will be published via peer-reviewed journals and presented at scientific meetings and public forums. Trial registration number: NCT05613751

DU Undergraduate Showcase: Research, Scholarship, and Creative Works

DU Undergraduate Showcase: Research, Scholarship, and Creative Work

Bath Breakfast Project (BBP) - Examining the role of extended daily fasting in human energy balance and associated health outcomes: Study protocol for a randomised controlled trial [ISRCTN31521726]

<p>Abstract</p> <p>Background</p> <p>Current guidance regarding the role of daily breakfast in human health is largely grounded in cross-sectional observations. However, the causal nature of these relationships has not been fully explored and what limited information is emerging from controlled laboratory-based experiments appears inconsistent with much existing data. Further progress in our understanding therefore requires a direct examination of how daily breakfast impacts human health under free-living conditions.</p> <p>Methods/Design</p> <p>The Bath Breakfast Project (BBP) is a randomised controlled trial comparing the effects of daily breakfast consumption relative to extended fasting on energy balance and human health. Approximately 70 men and women will undergo extensive laboratory-based assessments of their acute metabolic responses under fasted and post-prandial conditions, to include: resting metabolic rate, substrate oxidation, dietary-induced thermogenesis and systemic concentrations of key metabolites/hormones. Physiological and psychological indices of appetite will also be monitored both over the first few hours of the day (i.e. whether fed or fasted) and also following a standardised test lunch used to assess voluntary energy intake under controlled conditions. Baseline measurements of participants' anthropometric characteristics (e.g. DEXA) will be recorded prior to intervention, along with an oral glucose tolerance test and acquisition of adipose tissue samples to determine expression of key genes and estimates of tissue-specific insulin action. Participants will then be randomly assigned either to a group prescribed an energy intake of ≥3000 kJ before 1100 each day or a group to extend their overnight fast by abstaining from ingestion of energy-providing nutrients until 1200 each day, with all laboratory-based measurements followed-up 6 weeks later. Free-living assessments of energy intake (via direct weighed food diaries) and energy expenditure (via combined heart-rate/accelerometry) will be made during the first and last week of intervention, with continuous glucose monitors worn both to document chronic glycaemic responses to the intervention and to verify compliance.</p> <p>Trial registration</p> <p>Current Controlled Trials <a href="http://www.controlled-trials.com/ISRCTN31521726">ISRCTN31521726</a>.</p