Potential and Limitations of Open Satellite Data for Flood Mapping

Satellite remote sensing is a powerful tool to map flooded areas. In recent years, the availability of free satellite data significantly increased in terms of type and frequency, allowing the production of flood maps at low cost around the world. In this work, we propose a semi-automatic method for flood mapping, based only on free satellite images and open-source software. The proposed methods are suitable to be applied by the community involved in flood hazard management, not necessarily experts in remote sensing processing. As case studies, we selected three flood events that recently occurred in Spain and Italy. Multispectral satellite data acquired by MODIS, Proba-V, Landsat, and Sentinel-2 and synthetic aperture radar (SAR) data collected by Sentinel-1 were used to detect flooded areas using different methodologies (e.g., Modified Normalized Difference Water Index, SAR backscattering variation, and supervised classification). Then, we improved and manually refined the automatic mapping using free ancillary data such as the digital elevation model-based water depth model and available ground truth data. We calculated flood detection performance (flood ratio) for the different datasets by comparing with flood maps made by official river authorities. The results show that it is necessary to consider different factors when selecting the best satellite data. Among these factors, the time of the satellite pass with respect to the flood peak is the most important. With co-flood multispectral images, more than 90% of the flooded area was detected in the 2015 Ebro flood (Spain) case study. With post-flood multispectral data, the flood ratio showed values under 50% a few weeks after the 2016 flood in Po and Tanaro plains (Italy), but it remained useful to map the inundated pattern. The SAR could detect flooding only at the co-flood stage, and the flood ratio showed values below 5% only a few days after the 2016 Po River inundation. Another result of the research was the creation of geomorphology-based inundation maps that matched up to 95% with official flood maps

Aerossacolitis and pneumonia in an indian peafowl caused by Lactobacillus agilis

Background: The peafowl is an ornamental bird that has the habit of eating directly from the earthy soil, which makes this bird more susceptible to endoparasites. One important endoparasite is Eucoleus contortus, which leads to inflammatory processes that alter the local microbiota, potentializing disease. By the other way, a member of the bird’s microbiota there is the genus Lactobacillus, but when occurs some imbalance, these bacteria can overgrowth and even cause some infection. This report describes the pathological and microbiological findings of chronic necrotizing pneumonia and aerossacolitis caused by Lactobacillus agilis in a peafowl, associated with parasitism by E. contortus. Case: A peafowl (Pavo cristatus), adult, male, who lived on a farm with contact with other species of animal, was submitted to post-mortem examination due to sudden death. This animal lived in an extensive system on the property and was the only one of its species. During the gross evaluation, the air sacs were filled with solid yellowish crumbly material. The same material was observed forming well-defined nodules that occupied > 50% of the lung parenchyma. Histological analysis showed multiple parabronchi dilated and filled with caseous necrosis, characterized by abundant cellular debris and fibrin deposition. These areas were surrounded by the proliferation of fibrous connective tissue and inflammatory infiltrate of macrophages, giant cells, lymphocytes, and plasma cells. The air sacs parenchyma showed fibrin deposition and mixed inflammatory infiltrate. Multiple gram-positive bacilli were observed within the caseous foci in Gram-stained slides. In the crop and esophageal mucosa, cross-sections of filiform nematodes morphologically compatible with E. contortus were associated with chronic inflammatory infiltrate and epidermal hyperkeratosis. A lung section was submitted to Gram-Brown-Hopps and Ziehl-Neelsen (ZN) stains for bacterial investigation, and Grocott’s methenamine silver (GMS) stain for fungal investigation. Short gram-positive bacilli bacteria are observed within the caseous foci in Gram-stained slides. By the other way, no agents were identified on the ZN and GMS stains. Following the analysis, lung fragments were cultivated at aerobic and microaerophilic conditions on sheep blood agar and McConkey agar. All the microbial cultures were incubated at 37°C to 48 h. Pure culture, in microaerophilic condition, of Gram-positive bacilli, was observed. The isolated bacterium was identified by MALDI-TOF MS as L. agilis. Discussion: Although uncommon, L. agilis was the single bacterium identified and therefore, associated as a primary cause of necrotic pneumonia and aerossacolitis in the studied peafowl. The presence of E. contortus could induce the aspiration of regurgitated of little amount of material from the gastrointestinal tract with sufficient bacterial load to initiate an infection, but not enough to smother the animal. The gradual aspiration can induce a chronic inflammatory condition. Infections by bacteria from the host microbiota have been observed in animals and humans with immunodeficiency. In summary, both the parasitosis and the inflammation could be resulted by the parasite and the aspiration of gastric product, which probably interfered in the immune response and allowed the overgrowth of L. agilis. In the current case report, based on macroscopic, microscopic and bacteriological results, we have provided insights to understand how the parasitosis made possible a pneumonia from a bacterium from the host’s microbiota. Finally, to the best of our knowledge, this is the first report of Lactobacillus agilis as causal agent of fatal necrotic pneumonia and aerossacolitis in peafowl

Aerossacolitis and Pneumonia in an Indian Peafowl Caused by Lactobacillus agilis

Background: The peafowl is an ornamental bird that has the habit of eating directly from the earthy soil, which makes this bird more susceptible to endoparasites. One important endoparasite is Eucoleus contortus, which leads to inflammatory processes that alter the local microbiota, potentializing disease. By the other way, a member of the bird’s microbiota there is the genus Lactobacillus, but when occurs some imbalance, these bacteria can overgrowth and even cause some infection. This report describes the pathological and microbiological findings of chronic necrotizing pneumonia and aerossacolitis caused by Lactobacillus agilis in a peafowl, associated with parasitism by E. contortus. Case: A peafowl (Pavo cristatus), adult, male, who lived on a farm with contact with other species of animal, was submitted to post-mortem examination due to sudden death. This animal lived in an extensive system on the property and was the only one of its species. During the gross evaluation, the air sacs were filled with solid yellowish crumbly material. The same material was observed forming well-defined nodules that occupied > 50% of the lung parenchyma. Histological analysis showed multiple parabronchi dilated and filled with caseous necrosis, characterized by abundant cellular debris and fibrin deposition. These areas were surrounded by the proliferation of fibrous connective tissue and inflammatory infiltrate of macrophages, giant cells, lymphocytes, and plasma cells. The air sacs parenchyma showed fibrin deposition and mixed inflammatory infiltrate. Multiple gram-positive bacilli were observed within the caseous foci in Gram-stained slides. In the crop and esophageal mucosa, cross-sections of filiform nematodes morphologically compatible with E. contortus were associated with chronic inflammatory infiltrate and epidermal hyperkeratosis. A lung section was submitted to Gram-Brown-Hopps and Ziehl-Neelsen (ZN) stains for bacterial investigation, and Grocott's methenamine silver (GMS) stain for fungal investigation. Short gram-positive bacilli bacteria are observed within the caseous foci in Gram-stained slides. By the other way, no agents were identified on the ZN and GMS stains. Following the analysis, lung fragments were cultivated at aerobic and microaerophilic conditions on sheep blood agar and McConkey agar. All the microbial cultures were incubated at 37°C to 48 h. Pure culture, in microaerophilic condition, of Gram-positive bacilli, was observed. The isolated bacterium was identified by MALDI-TOF MS as L. agilis.Discussion: Although uncommon, L. agilis was the single bacterium identified and therefore, associated as a primary cause of necrotic pneumonia and aerossacolitis in the studied peafowl. The presence of E. contortus could induce the aspiration of regurgitated of little amount of material from the gastrointestinal tract with sufficient bacterial load to initiate an infection, but not enough to smother the animal. The gradual aspiration can induce a chronic inflammatory condition. Infections by bacteria from the host microbiota have been observed in animals and humans with immunodeficiency. In summary, both the parasitosis and the inflammation could be resulted by the parasite and the aspiration of gastric product, which probably interfered in the immune response and allowed the overgrowth of L. agilis. In the current case report, based on macroscopic, microscopic and bacteriological results, we have provided insights to understand how the parasitosis made possible a pneumonia from a bacterium from the host's microbiota. Finally, to the best of our knowledge, this is the first report of L. agilis as causal agent of fatal necrotic pneumonia and aerossacolitis in peafowl.Keywords: respiratory infection, ornamental birds, secondary infection, parasitosis

Evaluation of the SBAS InSAR Service of the European Space Agency’s Geohazard Exploitation Platform (GEP)

The analysis of remote sensing data to assess geohazards is being improved by web-based platforms and collaborative projects, such as the Geohazard Exploitation Platform (GEP) of the European Space Agency (ESA). This paper presents the evaluation of a surface velocity map that is generated by this platform. The map was produced through an unsupervised Multi-temporal InSAR (MTI) analysis applying the Parallel-SBAS (P-SBAS) algorithm to 25 ENVISAT satellite images from the South of Spain that were acquired between 2003 and 2008. This analysis was carried out using a service implemented in the GEP called “SBAS InSAR”. Thanks to the map that was generated by the SBAS InSAR service, we identified processes not documented so far; provided new monitoring data in places affected by known ground instabilities; defined the area affected by these instabilities; and, studied a case where GEP could have been able to help in the forecast of a slope movement reactivation. This amply demonstrates the reliability and usefulness of the GEP, and shows how web-based platforms may enhance the capacity to identify, monitor, and assess hazards that are associated to geological processes.Spanish “Juan de la Cierva” grants support part of the work of Jorge P. Galve. The expenses related to the hired researcher contract of Jorge P. Galve and the field surveying were funded by the project CGL2015-67130-C2-1-R (FEDER and Spanish Ministry of Economy and Competitiveness)

DInSAR-Based Detection of Land Subsidence and Correlation with Groundwater Depletion in Konya Plain, Turkey

In areas where groundwater overexploitation occurs, land subsidence triggered by aquifer compaction is observed, resulting in high socio-economic impacts for the affected communities. In this paper, we focus on the Konya region, one of the leading economic centers in the agricultural and industrial sectors in Turkey. We present a multi-source data approach aimed at investigating the complex and fragile environment of this area which is heavily affected by groundwater drawdown and ground subsidence. In particular, in order to analyze the spatial and temporal pattern of the subsidence process we use the Small BAseline Subset DInSAR technique to process two datasets of ENVISAT SAR images spanning the 2002–2010 period. The produced ground deformation maps and associated time-series allow us to detect a wide land subsidence extending for about 1200 km2 and measure vertical displacements reaching up to 10 cm in the observed time interval. DInSAR results, complemented with climatic, stratigraphic and piezometric data as well as with land-cover changes information, allow us to give more insights on the impact of climate changes and human activities on groundwater resources depletion and land subsidence

DInSAR-Based Detection of Land Subsidence and Correlation with Groundwater Depletion in Konya Plain, Turkey

In areas where groundwater overexploitation occurs, land subsidence triggered by aquifer compaction is observed, resulting in high socio-economic impacts for the affected communities. In this paper, we focus on the Konya region, one of the leading economic centers in the agricultural and industrial sectors in Turkey. We present a multi-source data approach aimed at investigating the complex and fragile environment of this area which is heavily affected by groundwater drawdown and ground subsidence. In particular, in order to analyze the spatial and temporal pattern of the subsidence process we use the Small BAseline Subset DInSAR technique to process two datasets of ENVISAT SAR images spanning the 2002–2010 period. The produced ground deformation maps and associated time-series allow us to detect a wide land subsidence extending for about 1200 km2 and measure vertical displacements reaching up to 10 cm in the observed time interval. DInSAR results, complemented with climatic, stratigraphic and piezometric data as well as with land-cover changes information, allow us to give more insights on the impact of climate changes and human activities on groundwater resources depletion and land subsidence

Aerossacolitis and Pneumonia in an Indian Peafowl Caused by Lactobacillus agilis

Background: The peafowl is an ornamental bird that has the habit of eating directly from the earthy soil, which makes this bird more susceptible to endoparasites. One important endoparasite is Eucoleus contortus, which leads to inflammatory processes that alter the local microbiota, potentializing disease. By the other way, a member of the bird’s microbiota there is the genus Lactobacillus, but when occurs some imbalance, these bacteria can overgrowth and even cause some infection. This report describes the pathological and microbiological findings of chronic necrotizing pneumonia and aerossacolitis caused by Lactobacillus agilis in a peafowl, associated with parasitism by E. contortus. Case: A peafowl (Pavo cristatus), adult, male, who lived on a farm with contact with other species of animal, was submitted to post-mortem examination due to sudden death. This animal lived in an extensive system on the property and was the only one of its species. During the gross evaluation, the air sacs were filled with solid yellowish crumbly material. The same material was observed forming well-defined nodules that occupied > 50% of the lung parenchyma. Histological analysis showed multiple parabronchi dilated and filled with caseous necrosis, characterized by abundant cellular debris and fibrin deposition. These areas were surrounded by the proliferation of fibrous connective tissue and inflammatory infiltrate of macrophages, giant cells, lymphocytes, and plasma cells. The air sacs parenchyma showed fibrin deposition and mixed inflammatory infiltrate. Multiple gram-positive bacilli were observed within the caseous foci in Gram-stained slides. In the crop and esophageal mucosa, cross-sections of filiform nematodes morphologically compatible with E. contortus were associated with chronic inflammatory infiltrate and epidermal hyperkeratosis. A lung section was submitted to Gram-Brown-Hopps and Ziehl-Neelsen (ZN) stains for bacterial investigation, and Grocott's methenamine silver (GMS) stain for fungal investigation. Short gram-positive bacilli bacteria are observed within the caseous foci in Gram-stained slides. By the other way, no agents were identified on the ZN and GMS stains. Following the analysis, lung fragments were cultivated at aerobic and microaerophilic conditions on sheep blood agar and McConkey agar. All the microbial cultures were incubated at 37°C to 48 h. Pure culture, in microaerophilic condition, of Gram-positive bacilli, was observed. The isolated bacterium was identified by MALDI-TOF MS as L. agilis.Discussion: Although uncommon, L. agilis was the single bacterium identified and therefore, associated as a primary cause of necrotic pneumonia and aerossacolitis in the studied peafowl. The presence of E. contortus could induce the aspiration of regurgitated of little amount of material from the gastrointestinal tract with sufficient bacterial load to initiate an infection, but not enough to smother the animal. The gradual aspiration can induce a chronic inflammatory condition. Infections by bacteria from the host microbiota have been observed in animals and humans with immunodeficiency. In summary, both the parasitosis and the inflammation could be resulted by the parasite and the aspiration of gastric product, which probably interfered in the immune response and allowed the overgrowth of L. agilis. In the current case report, based on macroscopic, microscopic and bacteriological results, we have provided insights to understand how the parasitosis made possible a pneumonia from a bacterium from the host's microbiota. Finally, to the best of our knowledge, this is the first report of L. agilis as causal agent of fatal necrotic pneumonia and aerossacolitis in peafowl.Keywords: respiratory infection, ornamental birds, secondary infection, parasitosis