2,241 research outputs found
Phonon renormalisation in doped bilayer graphene
We report phonon renormalisation in bilayer graphene as a function of doping.
The Raman G peak stiffens and sharpens for both electron and hole doping, as a
result of the non-adiabatic Kohn anomaly at the point. The bilayer has
two conduction and valence subbands, with splitting dependent on the interlayer
coupling. This results in a change of slope in the variation of G peak position
with doping, which allows a direct measurement of the interlayer coupling
strength.Comment: 5 figure
Biology and interactions of two distinct monopartite begomoviruses and betasatellites associated with radish leaf curl disease in India
<p>Abstract</p> <p>Background</p> <p>Emerging whitefly transmitted begomoviruses are major pathogens of vegetable and fibre crops throughout the world, particularly in tropical and sub-tropical regions. Mutation, pseudorecombination and recombination are driving forces for the emergence and evolution of new crop-infecting begomoviruses. Leaf curl disease of field grown radish plants was noticed in Varanasi and Pataudi region of northern India. We have identified and characterized two distinct monopartite begomoviruses and associated beta satellite DNA causing leaf curl disease of radish (<it>Raphanus sativus</it>) in India.</p> <p>Results</p> <p>We demonstrate that RaLCD is caused by a complex of two Old World begomoviruses and their associated betasatellites. Radish leaf curl virus-Varanasi is identified as a new recombinant species, <it>Radish leaf curl virus </it>(RaLCV) sharing maximum nucleotide identity of 87.7% with Tomato leaf curl Bangladesh virus-[Bangladesh:2] (Accession number AF188481) while the virus causing radish leaf curl disease-Pataudi is an isolate of Croton yellow vein mosaic virus-[India] (CYVMV-IN) (Accession number AJ507777) sharing 95.8% nucleotide identity. Further, RDP analysis revealed that the RaLCV has a hybrid genome, a putative recombinant between <it>Euphorbia leaf curl virus </it>and <it>Papaya leaf curl virus</it>. Cloned DNA of either RaLCV or CYVMV induced mild leaf curl symptoms in radish plants. However, when these clones (RaLCV or CYVMV) were individually co-inoculated with their associated cloned DNA betasatellite, symptom severity and viral DNA levels were increased in radish plants and induced typical RaLCD symptoms. To further extend these studies, we carried out an investigation of the interaction of these radish-infecting begomoviruses and their associated satellite, with two tomato infecting begomoviruses (<it>Tomato leaf curl Gujarat virus </it>and <it>Tomato leaf curl New Delhi virus</it>). Both of the tomato-infecting begomoviruses showed a contrasting and differential interaction with DNA satellites, not only in the capacity to interact with these molecules but also in the modulation of symptom phenotypes by the satellites.</p> <p>Conclusion</p> <p>This is the first report and experimental demonstration of Koch's postulate for begomoviruses associated with radish leaf curl disease. Further observations also provide direct evidence of lateral movement of weed infecting begomovirus in the cultivated crops and the present study also suggests that the exchange of betasatellites with other begomoviruses would create a new disease complex posing a serious threat to crop production.</p
Effect of reconstruction methods and x-ray tube current-time product on nodule detection in an anthropomorphic thorax phantom : a crossed-modality JAFROC observer study
Purpose: To evaluate nodule detection in an anthropomorphic chest phantom in computed tomography (CT) images reconstructed with adaptive iterative dose reduction 3D (AIDR3D) and filtered back projection (FBP) over a range of tube current-time product (mAs).
Methods: Two phantoms were used in this study: (i) an anthropomorphic chest phantom was loaded with spherical simulated nodules of 5, 8, 10 and 12mm in diameter and +100, -630 and -800 Hounsfied Units electron density; this would generate CT images for the observer study; (ii) a whole-body dosimetry verification phantom was used to ultimately estimate effective dose and risk according to the model of the BEIR VII committee. Both phantoms were scanned over a mAs range (10, 20, 30, and 40) while all other acquisition parameters remained constant. Images were reconstructed with both AIDR3D and FBP. 34 normal cases (no nodules) and 34 abnormal cases (containing 1-3 nodules, mean 1.35Ā±0.54) cases were chosen for the observer study. Eleven observers evaluated images from all tube current-time product and reconstruction methods under the free-response paradigm. A crossed-modality jackknife alternative free-response operating characteristic (JAFROC) analysis method was developed for data analysis, averaging data over the two factors influencing nodule detection in this study: mAs and image reconstruction (AIDR3D or FBP). A Bonferroni correction was applied and the threshold for declaring significance was set at 0.025 to maintain the overall probability of Type I error at Ī± = 0.05. Contrast-to-noise (CNR) was also measured for all nodules and evaluated by a linear least squares analysis.
Results: For random-reader fixed-case crossed-modality JAFROC analysis there was no significant difference in nodule detection between AIDR3D and FBP when data was averaged over mAs (F(1,10) = 0.08, p = 0.789). However, when data was averaged over reconstruction methods, a significant difference was seen between multiple pairs of mAs settings (F(3,30) = 15.96, p<0.001). Measurements of effective dose and effective risk showed the expected linear dependence on mAs. Nodule CNR was statistically higher for simulated nodules on images reconstructed with AIDR3D (p<0.001).
Conclusion: No significant difference in nodule detection performance was demonstrated between images reconstructed with FBP and AIDR3D. Tube current-time product was found to influence nodule detection, though further work is required for dose optimisation
A systematic review of current knowledge of HIV epidemiology and of sexual behaviour in Nepal
OBJECTIVE: To systematically review information on HIV epidemiology and on sexual behaviour in Nepal with a view to identifying gaps in current knowledge.
METHODS: Systematic review covering electronic databases, web-based information, personal contact with experts and hand searching of key journals.
RESULTS: HIV-1 seroprevalence has been rising rapidly in association with high-risk behaviours, with current levels of 40% amongst the nation's injecting drug users and approaching 20% amongst Kathmandu's female commercial sex workers (FCSWs). HIV seroprevalence remains low in the general population (0.29% of 15ā49 year olds). There are significant methodological limitations in many of the seroprevalence studies identified, and these estimates need to be treated with caution. There are extensive migration patterns both within the country and internationally which provide the potential for considerable sexual networking. However, studies of sexual behaviour have focused on FCSWs and the extent of sexual networks within the general population is largely unknown.
CONCLUSIONS: Whilst some of the ingredients are present for an explosive HIV epidemic in Nepal, crucial knowledge on sexual behaviour in the general population is missing. Research on sexual networking is urgently required to guide HIV control in Nepal. There is also a need for further good-quality epidemiological studies of HIV seroprevalence
Confirmation of low genetic diversity and multiple breeding females in a social group of Eurasian badgers from microsatellite and field data
The Eurasian badger (
Meles meles
) is a facultatively social carnivore that shows only rudimentary
co-operative behaviour and a poorly defined social hierarchy. Behavioural evidence
and limited genetic data have suggested that more than one female may breed in a
social group. We combine pregnancy detection by ultrasound and microsatellite locus
scores from a well-studied badger population from Wytham Woods, Oxfordshire, UK, to
demonstrate that multiple females reproduce within a social group. We found that at least
three of seven potential mothers reproduced in a group that contained 11 reproductive age
females and nine offspring. Twelve primers showed variability across the species range and only five of these were variable in Wytham. The microsatellites showed a reduced repeat number, a significantly higher number of nonperfect repeats, and moderate heterozygosity
levels in Wytham. The high frequency of imperfect repeats and demographic phenomena might be responsible for the reduced levels of variability observed in the badger
Genetic Improvement of Rice for Multiple Stress Tolerance in Unfavorable Rainfed Ecology
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Entanglement of single-photons and chiral phonons in atomically thin WSe
Quantum entanglement is a fundamental phenomenon which, on the one hand,
reveals deep connections between quantum mechanics, gravity and the space-time;
on the other hand, has practical applications as a key resource in quantum
information processing. While it is routinely achieved in photon-atom
ensembles, entanglement involving the solid-state or macroscopic objects
remains challenging albeit promising for both fundamental physics and
technological applications. Here, we report entanglement between collective,
chiral vibrations in two-dimensional (2D) WSe host --- chiral phonons (CPs)
--- and single-photons emitted from quantum dots (QDs) present in it. CPs which
carry angular momentum were recently observed in WSe and are a
distinguishing feature of the underlying honeycomb lattice. The entanglement
results from a "which-way" scattering process, involving an optical excitation
in a QD and doubly-degenerate CPs, which takes place via two indistinguishable
paths. Our unveiling of entanglement involving a macroscopic, collective
excitation together with strong interaction between CPs and QDs in 2D materials
opens up ways for phonon-driven entanglement of QDs and engineering chiral or
non-reciprocal interactions at the single-photon level
A mild alkali treated jute fibre controlling the hydration behaviour of greener cement paste
To reduce the antagonistic effect of jute fibre on the setting and hydration of jute reinforced cement, modified jute fibre reinforcement would be a unique approach. The present investigation deals with the effectiveness of mild alkali treated (0.5%) jute fibre on the setting and hydration behaviour of cement. Setting time measurement, hydration test and analytical characterizations of the hardened samples (viz., FTIR, XRD, DSC, TGA and free lime estimation) were used to evaluate the effect of alkali treated jute fibre. From the hydration test, the time (t) required to reach maximum temperature for the hydration of control cement sample is estimated to be 860ā
min, whilst the time (t) is measured to be 1040ā
min for the hydration of a raw jute reinforced cement sample. However, the time (t) is estimated to be 1020ā
min for the hydration of an alkali treated jute reinforced cement sample. Additionally, from the analytical characterizations, it is determined that fibre-cement compatibility is increased and hydration delaying effect is minimized by using alkali treated jute fibre as fibre reinforcement. Based on the analyses, a model has been proposed to explain the setting and hydration behaviour of alkali treated jute fibre reinforced cement composite
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