A memetic algorithm to minimize the total sum of earliness tardiness and sequence dependent setup costs for flow shop scheduling problems with job distinct due windows

The research considers the flow shop scheduling problem under the Just-In-Time (JIT) philosophy. There are n jobs waiting to be processed through m operations of a flow shop production system. The objective is to determine the job schedule such that the total cost consisting of setup, earliness, and tardiness costs, is minimized. To represent the problem, the Integer Linear Programming (ILP) mathematical model is created. A Memetic Algorithm (MA) is developed to determine the proper solution. The evolutionary procedure, worked as the global search, is applied to seek for the good job sequences. In order to conduct the local search, an optimal timing algorithm is developed and inserted in the procedure to determine the best schedule of each job sequence. From the numerical experiment of 360 problems, the proposed MA can provide optimal solutions for 355 problems. It is obvious that the MA can provide the good solution in a reasonable amount of time

26 December 2004 tsunami deposits left in areas of various tsunami runup in coastal zone of Thailand

The tsunami deposits left by the 26 December 2004 tsunami in the coastal zone of Thailand were studied within two months of the event and before any significant postdepositional changes could occur. The sediment structure and texture (grain size), as well as its thickness and spatial distribution, were documented for the tsunami deposits in 12 shore-perpendicular transects from areas of various tsunami runup and wave heights. The tsunami deposits were as thick as 0.4 m and were located as far as 1.5 km inland. They were composed mostly of poorly sorted sand and often consisted of one to four normally graded, massive or laminated layers. The deposits generally became finer in the landward direction; however, landward thinning trend of the deposits is not clear, and the maximum accumulation often is not located close to the shoreline but rather is further inland. In comparable coastal environments with similar available sediment sources the tsunami size (represented as the tsunami runup height) is reflected in the resulting deposits. Larger tsunamis are associated with deposits that are thicker, have a maximum accumulation located farther inland, include a finer sediment fraction (likely from deeper offshore areas) and frequently are composed of normally graded layers.Adam Mickiewicz University in Poznań, Poland and Department of Mineral Resources in Bangkok, Thailan

Comparison of community-onset Staphylococcus argenteus and Staphylococcus aureus sepsis in Thailand: a prospective multicentre observational study.

Staphylococcus argenteus is a globally distributed cause of human infection, but diagnostic laboratories misidentify this as Staphylococcus aureus. We determined whether there is clinical utility in distinguishing between the two. A prospective cohort study of community-onset invasive staphylococcal sepsis was conducted in adults at four hospitals in northeast Thailand between 2010 and 2013. Of 311 patients analysed, 58 (19%) were infected with S. argenteus and 253 (81%) with S. aureus. Most S. argenteus (54/58) were multilocus sequence type 2250. Infection with S. argenteus was more common in males, but rates of bacteraemia and drainage procedures were similar in the two groups. S. argenteus precipitated significantly less respiratory failure than S. aureus (5.2% versus 20.2%, adjusted OR 0.21, 95% CI 0.06-0.74, p 0.015), with a similar but non-significant trend for shock (6.9% versus 12.3%, adjusted OR 0.46, 95% CI 0.15-1.44, p 0.18). This did not translate into a difference in death at 28 days (6.9% versus 8.7%, adjusted OR 0.80, 95% CI 0.24-2.65, p 0.72). S. argenteus was more susceptible to antimicrobial drugs compared with S. aureus, and contained fewer toxin genes although pvl was detected in 16% (9/58). We conclude that clinical differences exist in association with sepsis due to S. argenteus versus S. aureus

Epidemiology of and risk factors for extrapulmonary nontuberculous mycobacterial infections in Northeast Thailand

Background Nontuberculous mycobacterial (NTM) infection is increasing worldwide. Current epidemiological data and knowledge of risk factors for this disease are limited. We investigated the trends in and risk of NTM infection in Northeast Thailand during 2012–2016. Methods Patient demographics, infection site(s), and underlying disease or conditions from 530 suspected cases of NTM infections were retrieved from medical records, reviewed and analyzed. A diagnosis of true NTM infection was accepted in 150 cases. Risk factor analyses were done for extrapulmonary NTM infections compared to pulmonary NTM infections and for Mycobacterium abscessus compared to members of the Mycobacterium avium complex (MAC). Trend analysis among NTM species causing NTM infections was performed. Results The most common species of NTMs causing extrapulmonary (n = 114) and pulmonary (n = 36) NTM infections in Northeast Thailand were M. abscessus (25.4% of extrapulmonary infected cases and 27.8% of pulmonary cases) followed by MAC (14.9% of extrapulmonary and 13.9% of pulmonary cases). Presence of anti-IFN-γ autoantibodies was the major risk factor for extrapulmonary (odds ratio (OR) = 20.75, 95%CI [2.70–159.24]) compared to pulmonary NTM infection. M. abscessus infection was less likely (OR = 0.17; 95%CI [0.04–0.80]) to be found in patients with HIV infection than was MAC infection. The prevalence of NTM infection, especially M. abscessus, in Northeast Thailand has recently increased. Extrapulmonary NTM and complicated NTM infections have increased in concordance with the recent trend of increasing frequency of anti-IFN-γ autoantibodies in the population. Conclusions M. abscessus was the commonest NTM pathogen followed by MAC. The prevalence of NTM infections and anti-IFN-γ are showing an upward trend. Autoimmune disease due to anti-IFN-γ is the major risk factor for extrapulmonary NTM infection in Northeast Thailand

Direct ESR dating of the Pleistocene vertebrate assemblage from Khok Sung locality, Nakhon Ratchasima Province, Northeast Thailand

We report here the first direct dating study of the faunal assemblage from Khok Sung locality, Thailand. This palaeontological site is of great biochronological, palaeoenvironmental and biogeographical significance. Firstly, it has yielded a rich and diversified Pleistocene vertebrate fauna with up to 15 mammalian species from 13 genera, 10 reptile species, as well as fish and bird remains. Interestingly, while most of the mainland Southeast Asian Pleistocene mammal fossils originate from cave deposits, the Khok Sung fossil layer is located within an 8 m thick fluvial terrace. Secondly, it is geographically located in an area of major importance for reconstructing the migration pathway of large mammals between South China and Java. Combined US-ESR dating of five teeth provides two possible ages of 130 - 29 ka and 217 - 36 ka for the fossils. The reason for the occurrence of these two age groups lies in the fact that it was not possible to obtain sediments that were directly associated with the measured samples, nor was it possible to carry out in situ gamma dose rate measurements due to the high water level. Sediment samples recovered from museum specimens show significantly variable concentrations of radioelements. Both options are equally plausible, as independent methods did not provide firm evidence favouring one or the other age range. The results illustrate the intrinsic limitations of the ESR dating method when fossil teeth are not collected in situ during the excavation. Regardless whether the age of the Khok Sung fauna corresponds to MIS 7 or early MIS5, it is nevertheless one of the oldest assemblages directly dated in the region. Further efforts are required for more accurate fossil identification and attribution and for additional numerical dating in this region to improve the biochronological framework of the Pleistocene mammalian faunas in Southeast Asia, which presently remains quite imprecise.Aspects of this study have been funded by the Australian Research Council Future Fellowship grant FT150100215 granted to M.D., an ANU-CSC Scholarship to F.F., and by the C.N.R.S. “Eclipse” Program and the Department of Mineral Resources (Bangkok)

TLR4 genetic variation is associated with inflammatory responses in Gram-positive sepsis.

OBJECTIVES: To identify important pathogen recognition receptor (PRR) pathways regulating innate immune responses and outcome in Staphylococcus aureus sepsis. METHODS: We analysed whether candidate PRR pathway genetic variants were associated with killed S. aureus-induced cytokine responses ex vivo and performed follow-up in vitro studies. We tested the association of our top-ranked variant with cytokine responses and clinical outcomes in a prospective multicentre cohort of patients with staphylococcal sepsis. RESULTS: An intronic TLR4 polymorphism and expression quantitative trait locus, rs1927907, was highly associated with cytokine release induced by stimulation of blood from healthy Thai subjects with S. aureus ex vivo. S. aureus did not induce TLR4-dependent NF-κB activation in transfected HEK293 cells. In monocytes, tumor necrosis factor (TNF)-α release induced by S. aureus was not blunted by a TLR4/MD-2 neutralizing antibody, but in a monocyte cell line, TNF-α was reduced by knockdown of TLR4. In Thai patients with staphylococcal sepsis, rs1927907 was associated with higher interleukin (IL)-6 and IL-8 levels as well as with respiratory failure. S. aureus-induced responses in blood were most highly correlated with responses to Gram-negative stimulants whole blood. CONCLUSIONS: A genetic variant in TLR4 is associated with cytokine responses to S. aureus ex vivo and plasma cytokine levels and respiratory failure in staphylococcal sepsis. While S. aureus does not express lipopolysaccharide or activate TLR4 directly, the innate immune response to S. aureus does appear to be modulated by TLR4 and shares significant commonality with that induced by Gram-negative pathogens and lipopolysaccharide

Lineage-Specific Expansions of Retroviral Insertions within the Genomes of African Great Apes but Not Humans and Orangutans

Retroviral infections of the germline have the potential to episodically alter gene function and genome structure during the course of evolution. Horizontal transmissions between species have been proposed, but little evidence exists for such events in the human/great ape lineage of evolution. Based on analysis of finished BAC chimpanzee genome sequence, we characterize a retroviral element (Pan troglodytes endogenous retrovirus 1 [PTERV1]) that has become integrated in the germline of African great ape and Old World monkey species but is absent from humans and Asian ape genomes. We unambiguously map 287 retroviral integration sites and determine that approximately 95.8% of the insertions occur at non-orthologous regions between closely related species. Phylogenetic analysis of the endogenous retrovirus reveals that the gorilla and chimpanzee elements share a monophyletic origin with a subset of the Old World monkey retroviral elements, but that the average sequence divergence exceeds neutral expectation for a strictly nuclear inherited DNA molecule. Within the chimpanzee, there is a significant integration bias against genes, with only 14 of these insertions mapping within intronic regions. Six out of ten of these genes, for which there are expression data, show significant differences in transcript expression between human and chimpanzee. Our data are consistent with a retroviral infection that bombarded the genomes of chimpanzees and gorillas independently and concurrently, 3–4 million years ago. We speculate on the potential impact of such recent events on the evolution of humans and great apes

Isotopic niche modelling of the Pondaung mammal fauna (middle Eocene, Myanmar) shows microhabitat differences. Insights into paleoecology and early anthropoid primate habitats

The late Middle Eocene Pondaung Fm. is a window to understand the environment and ecosystem dynamics of a past greenhouse world and the paleoenvironments where modern mammal clades such as anthropoid primates originated. Previous studies focused on the overall climate and vegetation of this Eocene habitat and provided first evidence for an early monsoon onset before the orogenesis of the Himalayan-Tibetan range. Here, we wanted to investigate how the mammal fauna used this habitat and which different ecological niches and microhabitats they occupied. We analyzed the carbonate fraction of dental enamel of a fossil mammal assemblage from various localities of the Pondaung Fm. in Myanmar. Bayesian niche modelling of the δ13C and δ18O values allowed us to quantify aspects of the ecological core niches occupied by these taxa, to calculate niche overlap and to use these data to infer directional competition potential in this mammal assemblage. Furthermore, comparison of different areas of the Pondaung Fm. revealed two different microhabitats whose distribution is consistent with existing vegetation models. Most primate taxa were found in both described environments, which gives a first indication about their ecological flexibility

Vicariance or dispersal? Historical biogeography of three Sunda shelf murine rodents ( Maxomys surifer , Leopoldamys sabanus and Maxomys whiteheadi )

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/75628/1/j.1095-8312.2004.00281.x.pd