Analytical modeling of circuit aerodynamics in the new NASA Lewis wind tunnel

Rehabilitation and extention of the capability of the altitude wind tunnel (AWT) was analyzed. The analytical modeling program involves the use of advanced axisymmetric and three dimensional viscous analyses to compute the flow through the various AWT components. Results for the analytical modeling of the high speed leg aerodynamics are presented; these include: an evaluation of the flow quality at the entrance to the test section, an investigation of the effects of test section bleed for different model blockages, and an examination of three dimensional effects in the diffuser due to reentry flow and due to the change in cross sectional shape of the exhaust scoop

Fermionic Contributions to the Free Energy of Noncommutative Quantum Electrodynamics at High Temperature

We consider the fermionic contributions to the free energy of noncommutative QED at finite temperature $T$. This analysis extends the main results of our previous investigation where we have considered the pure bosonic sector of the theory. For large values of $\theta T^2$ ($\theta$ is the magnitude of the noncommutative parameters) the fermionic contributions decrease the value of the critical temperature, above which there occurs a thermodynamic instability.Comment: 6 pages, 3 figures. To be published in Physics Letters

On the Free Energy of Noncommutative Quantum Electrodynamics at High Temperature

We compute higher order contributions to the free energy of noncommutative quantum electrodynamics at a nonzero temperature $T$. Our calculation includes up to three-loop contributions (fourth order in the coupling constant $e$). In the high temperature limit we sum all the {\it ring diagrams} and obtain a result which has a peculiar dependence on the coupling constant. For large values of $e\theta T^2$ ($\theta$ is the magnitude of the noncommutative parameters) this non-perturbative contribution exhibits a non-analytic behavior proportional to $e^3$. We show that above a certain critical temperature, there occurs a thermodynamic instability which may indicate a phase transition.Comment: 28 pages, 37 figures. Matches published version in Nuclear Physics

There and back again: migration in freshwater fishes

Animal migration is an amazing phenomenon that has fascinated humans for long. Many freshwater fishes also show remarkable migrations, whereof the spectacular mass migrations of salmonids from the spawning streams are the most well known and well studied. However, recent studies have shown that migration occurs in a range of freshwater fish taxa from many different habitats. In this review we focus on the causes and consequences of migration in freshwater fishes. We start with an introduction of concepts and categories of migration, and then address the evolutionary causes that drive individuals to make these migratory journeys. The basis for the decision of an individual fish to migrate or stay resident is an evaluation of the costs and benefits of different strategies to maximize its lifetime reproductive effort. We provide examples by discussing our own work on the causes behind seasonal migration in a cyprinid fish, roach (Rutilus rutilus (L., 1758)), within this framework. We then highlight different adaptations that allow fish to migrate over sometimes vast journeys across space, including capacity for orientation, osmoregulation, and efficient energy expenditure. Following this we consider the consequences of migration in freshwater fish from ecological, evolutionary, and conservation perspectives, and finally, we detail some of the recent developments in the methodologies used to collect data on fish migration and how these could be used in future research

Phase diagram of the su(8) quantum spin tube

We calculate the phase diagram of an integrable anisotropic 3-leg quantum spin tube connected to the su(8) algebra. We find several quantum phase transitions for antiferromagnetic rung couplings. Their locations are calculated exactly from the Bethe Ansatz solution and we discuss the nature of each of the different phases.Comment: 10 pages, RevTeX, 1 postscript figur

Integrity of H1 helix in prion protein revealed by molecular dynamic simulations to be especially vulnerable to changes in the relative orientation of H1 and its S1 flank

In the template-assistance model, normal prion protein (PrPC), the pathogenic cause of prion diseases such as Creutzfeldt-Jakob (CJD) in human, Bovine Spongiform Encephalopathy (BSE) in cow, and scrapie in sheep, converts to infectious prion (PrPSc) through an autocatalytic process triggered by a transient interaction between PrPC and PrPSc. Conventional studies suggest the S1-H1-S2 region in PrPC to be the template of S1-S2 $\beta$-sheet in PrPSc, and the conformational conversion of PrPC into PrPSc may involve an unfolding of H1 in PrPC and its refolding into the $\beta$-sheet in PrPSc. Here we conduct a series of simulation experiments to test the idea of transient interaction of the template-assistance model. We find that the integrity of H1 in PrPC is vulnerable to a transient interaction that alters the native dihedral angles at residue Asn$^{143}$, which connects the S1 flank to H1, but not to interactions that alter the internal structure of the S1 flank, nor to those that alter the relative orientation between H1 and the S2 flank.Comment: A major revision on statistical analysis method has been made. The paper now has 23 pages, 11 figures. This work was presented at 2006 APS March meeting session K29.0004 at Baltimore, MD, USA 3/13-17, 2006. This paper has been accepted for pubcliation in European Biophysical Journal on Feb 2, 200

Note on the thermodynamic Bethe Ansatz approach to the quantum phase diagram of the strong coupling ladder compounds

We investigate the low-temperature phase diagram of the exactly solved su(4) two-leg spin ladder as a function of the rung coupling $J_{\perp}$ and magnetic field $H$ by means of the thermodynamic Bethe Ansatz (TBA). In the absence of a magnetic field the model exhibits three quantum phases, while in the presence of a strong magnetic field there is no singlet ground state for ferromagnetic rung coupling. For antiferromagnetic rung coupling, there is a gapped phase in the regime H H_{c2} and a Luttinger liquid magnetic phase in the regime H_{c1} < H < H_{c2}. The critical behaviour derived using the TBA is consistent with the existing experimental, numerical and perturbative results for the strong coupling ladder compounds. This includes the spin excitation gap and the critical fields H_{c1} and H_{c2}, which are in excellent agreement with the experimental values for the known strong coupling ladder compounds (5IAP)_2CuBr_4 2H_2 O, Cu_2(C_5 H_{12} N_2)_2 Cl_4 and (C_5 H_{12} N)_2 CuBr_4. In addition we predict the spin gap $\Delta \approx J_{\perp}-{1/2}J_{\parallel}$ for the weak coupling compounds with $J_{\perp} \sim J_{\parallel}$, such as (VO)_2 P_2 O_7, and also show that the gap opens for arbitrary $J_{\perp}/ J_{\parallel}$.Comment: 10 pages, 3 figure

The contribution of PA-X to the virulence of pandemic 2009 H1N1 and highly pathogenic H5N1 avian influenza viruses

PA-X is a novel protein encoded by PA mRNA and is found to decrease the pathogenicity of pandemic 1918 H1N1 virus in mice. However, the importance of PA-X proteins in current epidemiologically important influenza A virus strains is not known. In this study, we report on the pathogenicity and pathological effects of PA-X deficient 2009 pandemic H1N1 (pH1N1) and highly pathogenic avian influenza H5N1 viruses. We found that loss of PA-X expression in pH1N1 and H5N1 viruses increased viral replication and apoptosis in A549 cells and increased virulence and host inflammatory response in mice. In addition, PA-X deficient pH1N1 and H5N1 viruses up-regulated PA mRNA and protein synthesis and increased viral polymerase activity. Loss of PA-X was also accompanied by accelerated nuclear accumulation of PA protein and reduced suppression of PA on non-viral protein expression. Our study highlights the effects of PA-X on the moderation of viral pathogenesis and pathogenicity

Open su(4)-invariant spin ladder with boundary defects

The integrable su(4)-invariant spin-ladder model with boundary defect is studied using the Bethe ansatz method. The exact phase diagram for the ground state is given and the boundary quantum critical behavior is discussed. It consists of a gapped phase in which the rungs of the ladder form singlet states and a gapless Luttinger liquid phase. It is found that in the gapped phase the boundary bound state corresponds to an unscreened local moment, while in the Luttinger liquid phase the local moment is screened at low temperatures in analogy to the Kondo effect.Comment: Revtex 9 pages, published in PR

Biochemical characterization of Acacia schweinfurthii serine proteinase inhibitor

One of the many control mechanisms of serine proteinases is their specific inhibition by protein proteinase inhibitors. An extract of Acacia schweinfurthii was screened for potential serine proteinase inhibition. It was successfully purified to homogeneity by precipitating with 80% (v/v) acetone and sequential chromatographic steps, including ion-exchange, affinity purifica- Q2 tion and RP-HPLC. Reducing SDS-PAGE conditions revealed an inhibitor (ASTI) consisting of two polypeptide chains A and B of approximate molecular weights of 16 and 10 kDa, respectively, and under non-reducing conditions, 26 kDa was observed. The inhibitor was shown to inhibit bovine trypsin (Ki of 3.45 nM) at an approximate molar ratio of inhibitor: trypsin (1:1). The A- and B-chains revealed complete sequences of 140 and 40 amino acid residues, respectively. Sequence similarity (70%) was reported between ASTI A-chain and ACTI A-chain (Acacia confusa) using the ClustalW. The B-chain produced a 76% sequence similarity between ASTI and Leucaena leucocephala trypsin inhibitor