Texture classification of proteins using support vector machines and bio-inspired metaheuristics

6th International Joint Conference, BIOSTEC 2013, Barcelona, Spain, February 11-14, 2013[Abstract] In this paper, a novel classification method of two-dimensional polyacrylamide gel electrophoresis images is presented. Such a method uses textural features obtained by means of a feature selection process for whose implementation we compare Genetic Algorithms and Particle Swarm Optimization. Then, the selected features, among which the most decisive and representative ones appear to be those related to the second order co-occurrence matrix, are used as inputs for a Support Vector Machine. The accuracy of the proposed method is around 94 %, a statistically better performance than the classification based on the entire feature set. This classification step can be very useful for discarding over-segmented areas after a protein segmentation or identification process

TAPE: An End-to-End Timbre-Aware Pitch Estimator

This work has been accepted at the 2023 IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP 2023), at Rhodes, Greece. June 4-10, 2023.Pitch estimation of a target musical source within a multi-source polyphonic signal is of great interest for music performance analysis. One possible approach for extracting the pitch of a target source is to first perform source separation and then estimate the pitch of the separated track. However, as we will show, this typically leads to poor results. As an alternative to this approach, we introduce a timbre-aware pitch estimator (TAPE), which estimates the pitch of a target source in an end-to-end manner without the need for an explicit source separation step. Opposed to existing approaches that assume the predominance of a lead voice, our approach builds upon other cues that only rely on the timbral characteristics. Our results on real violin-piano duets show that, without any pre-processing step, TAPE outperforms the sequential procedure of source separation and pitch estimation under many settings, even if the target source is not predominant.This research is funded by the project Musical AI - PID2019-111403GB-I00/AEI/10.13039/501100011033 funded by the Spanish Ministerio de Ciencia, Innovacion y Universidades (MCIU) and the Agencia Estatal de Investigacion (AEI), and by the German Research Foundation (DFG MU 2686/10-2)

Adapting participatory processes to fine‐tune conservation approaches in multiactor decision settings

International audienceConservation decisions are typically made in complex, dynamic, and uncertain settings, where multiple actors raise diverse and potentially conflicting claims, champion different and sometimes contradictory values, and enjoy varying degrees of freedom and power to act and influence collective decisions. Therefore, effective conservation actions require conservation scientists and practitioners to take into account the complexity of multiactor settings. We devised a framework to help conservation biologists and practitioners in this task. Institutional economic theories, which are insufficiently cited in the conservation literature, contain useful insights for conservation. Among these theories, the economies of worth can significantly contribute to conservation because it can be used to classify the types of values peoples or groups refer to when they interact during the elaboration and implementation of conservation projects. Refining this approach, we designed a framework to help conservation professionals grasp the relevant differences among settings in which decisions related to conservation actions are to be made, so that they can adapt their approaches to the features of the settings they encounter. This framework distinguishes 6 types of agreements and disagreements that can occur between actors involved in a conservation project (harmony, stricto sensu arrangement, deliberated arrangement, unilateral and reciprocal compromise, and locked‐in), depending on whether they disagree on values or on their applications and on whether they can converge toward common values by working together. We identified key questions that conservationists should answer to adapt their strategy to the disagreements they encounter and identified relevant participatory processes to complete the adaptation

The role of species charisma in biological invasions

Commonly used in the literature to refer to the “attractiveness”, “appeal”, or “beauty” of a species, charisma can be defined as a set of characteristics – and the perception thereof – that affect people's attitudes and behaviors toward a species. It is a highly relevant concept for invasion science, with implications across all stages of the invasion process. However, the concept of invasive alien species (IAS) charisma has not yet been systematically investigated. We discuss this concept in detail, provide a set of recommendations for further research, and highlight management implications. We review how charisma affects the processes associated with biological invasions and IAS management, including species introductions and spread, media portrayals, public perceptions of species management, research attention, and active public involvement in research and management. Explicit consideration of IAS charisma is critical for understanding the factors that shape people's attitudes toward particular species, planning management measures and strategies, and implementing a combination of education programs, awareness raising, and public involvement campaigns

Variation that can be expected when using particle tracking models in connectivity studies

Hydrodynamic Ocean Circulation Models and Lagrangian particle tracking models are valuable tools e.g. in coastal ecology to identify the connectivity between offshore spawning and coastal nursery areas of commercially important fish, for risk assessment and more for defining or evaluating marine protected areas. Most studies are based on only one model and do not provide levels of uncertainty. Here this uncertainty was addressed by applying a suite of 11 North Sea models to test what variability can be expected concerning connectivity. Different notional test cases were calculated related to three important and well-studied North Sea fish species: herring (Clupea harengus), and the flatfishes sole (Solea solea) and plaice (Pleuronectes platessa). For sole and plaice we determined which fraction of particles released in the respective spawning areas would reach a coastal marine protected area. For herring we determined the fraction located in a wind park after a predefined time span. As temperature is more and more a focus especially in biological and global change studies, furthermore inter-model variability in temperatures experienced by the virtual particles was determined. The main focus was on the transport variability originating from the physical models and thus biological behavior was not included. Depending on the scenario, median experienced temperatures differed by 3 °C between years. This range between the different models in one year was comparable to the temperature range observed between all modelled years. Connectivity between flatfish spawning areas and the coastal protected area was highly dependent on the release location and spawning time. No particles released in the English Channel in the sole scenario reached the protected area while up to 20% of the particles released in the plaice scenario did. Interannual trends in transport directions and connectivity rates were comparable between models but absolute values displayed high variations. Most models showed systematic biases during all years in comparison to the ensemble median, indicating that in general interannual variation was represented but absolute values varied. In conclusion: variability between models is generally high and management decisions or scientific analysis using absolute values from only one single model might be biased and results or conclusions drawn from such studies need to be treated with caution. We further concluded that more true validation data for particle modelling are required