786 research outputs found
Three geographically separate domestications of Asian rice
Domesticated rice (Oryza sativa L.) accompanied the dawn of Asian civilization(1) and has become one of world's staple crops. From archaeological and genetic evidence various contradictory scenarios for the origin of different varieties of cultivated rice have been proposed, the most recent based on a single domestication(2,3). By examining the footprints of selection in the genomes of different cultivated rice types, we show that there were three independent domestications in different parts of Asia. We identify wild populations in southern China and the Yangtze valley as the source of the japonica gene pool, and populations in Indochina and the Brahmaputra valley as the source of the indica gene pool. We reveal a hitherto unrecognized origin for the aus variety in central India or Bangladesh. We also conclude that aromatic rice is a result of a hybridization between japonica and aus, and that the tropical and temperate versions of japonica are later adaptations of one crop. Our conclusions are in accord with archaeological evidence that suggests widespread origins of rice cultivation(1,4). We therefore anticipate that our results will stimulate a more productive collaboration between genetic and archaeological studies of rice domestication, and guide utilization of genetic resources in breeding programmes aimed at crop improvement.European Research Council [339941]info:eu-repo/semantics/publishedVersio
Domestication as innovation : the entanglement of techniques, technology and chance in the domestication of cereal crops
The origins of agriculture involved pathways of domestication in which human behaviours and plant genetic adaptations were entangled. These changes resulted in consequences that were unintended at the start of the process. This paper highlights some of the key innovations in human behaviours, such as soil preparation, harvesting and threshing, and how these were coupled with genetic ‘innovations’ within plant populations. We identify a number of ‘traps’ for early cultivators, including the needs for extra labour expenditure on crop-processing and soil fertility maintenance, but also linked gains in terms of potential crop yields. Compilations of quantitative data across a few different crops for the traits of nonshattering and seed size are discussed in terms of the apparently slow process of domestication, and parallels and differences between different regional pathways are identified. We highlight the need to bridge the gap between a Neolithic archaeobotanical focus on domestication and a focus of later periods on crop-processing activities and labour organization. In addition, archaeobotanical data provide a basis for rethinking previous assumptions about how plant genetic data should be related to the origins of agriculture and we contrast two alternative hypotheses: gradual evolution with low selection pressure versus metastable equilibrium that prolonged the persistence of ‘semi-domesticated’ populations. Our revised understanding of the innovations involved in plant domestication highlight the need for new approaches to collecting, modelling and integrating genetic data and archaeobotanical evidence
The genomics of domestication special issue editorial
Domestication has been of major interest to biologists for centuries, whether for creating new plants and animal types or more formally exploring the principles of evolution. Such studies have long used combinations of phenotypic and genetic evidence. Recently, the advent of a large number of genomes and genomic tools across a wide array of domesticated plant and animal species has reinvigorated the study of domestication. These genomic data, which can be easily generated for nearly any species, often provide great insight with or without a reference genome. The comparison of genome wide data from domestic and wild species has ignited a wave of insight into human, plant, and animal history with a new range of questions becoming accessible. With this in mind, this issue of Evolutionary Applications includes eleven papers covering a wide range of perspectives and methodologies relevant to understanding genomic variation under domestication
Global Study of Electron-Quark Contact Interactions
We perform a global fit of data relevant to contact interactions,
including deep inelastic scattering at high from ZEUS and H1, atomic
physics parity violation in Cesium from JILA, polarized on nuclei
scattering experiments at SLAC, Mainz and Bates, Drell-Yan production at the
Tevatron, the total hadronic cross section at LEP, and
neutrino-nucleon scattering from CCFR. With only the new HERA data, the
presence of contact interactions improves the fit compared to the Standard
Model. When other data sets are included, the size of the contact contributions
is reduced and the overall fit represents no real improvement over the Standard
Model.Comment: 26 pages (now single-spaced), Revtex, 2 eps figures, uses epsf.sty.
Some clarifications, minor corrections, 2 new references, also 3 new tables
which present 95% CL bounds on the contact interaction scales Lambd
Can lepton flavor violating interactions explain the atmospheric neutrino problem?
We investigate whether flavor changing neutrino interactions (FCNIs) can be
sufficiently large to provide a viable solution to the atmospheric neutrino
problem. Effective operators induced by heavy boson exchange that allow for
flavor changing neutrino scattering off quarks or electrons are related by an
rotation to operators that induce anomalous tau decays. Since
violation is small for New Physics at or above the weak scale, one
can use the upper bounds on lepton flavor violating tau decays or on lepton
universality violation to put severe, model-independent bounds on the relevant
non-standard neutrino interactions. Also -induced flavor changing neutral
currents, due to heavy singlet neutrinos, are too small to be relevant for the
atmospheric neutrino anomaly. We conclude that the FCNI solution to the
atmospheric neutrino problem is ruled out.Comment: 16 pages, no figures, Late
Neutrino Interactions In Oscillation Experiments
We calculate neutrino induced cross-sections relevant for oscillation
experiments, including the -lepton threshold for quasi-elastic, resonance
and deep inelastic scattering. In addition to threshold effects, we include
nuclear corrections for heavy targets which are moderate for quasi-elastic and
large for single pion production. Nuclear effects for deep inelastic reactions
are small. We present cross sections together with their nuclear corrections
for various channels which are useful for interpreting the experimental results
and for determining parameters of the neutrino sector..Comment: 24 pages, 18 figure
Inherited biotic protection in a Neotropical pioneer plant
Chelonanthus alatus is a bat-pollinated, pioneer Gentianaceae that clusters in patches where still-standing, dried-out stems are interspersed among live individuals. Flowers bear circum-floral nectaries (CFNs) that are attractive to ants, and seed dispersal is both barochorous and anemochorous. Although, in this study, live individuals never sheltered ant colonies, dried-out hollow stems - that can remain standing for 2 years - did. Workers from species nesting in dried-out stems as well as from ground-nesting species exploited the CFNs of live C. alatus individuals in the same patches during the daytime, but were absent at night (when bat pollination occurs) on 60.5% of the plants. By visiting the CFNs, the ants indirectly protect the flowers - but not the plant foliage - from herbivorous insects. We show that this protection is provided mostly by species nesting in dried-out stems, predominantly Pseudomyrmex gracilis. That dried-out stems remain standing for years and are regularly replaced results in an opportunistic, but stable association where colonies are sheltered by one generation of dead C. alatus while the live individuals nearby, belonging to the next generation, provide them with nectar; in turn, the ants protect their flowers from herbivores. We suggest that the investment in wood by C. alatus individuals permitting stillstanding, dried-out stems to shelter ant colonies constitutes an extended phenotype because foraging workers protect the flowers of live individuals in the same patch. Also, through this process these dried-out stems indirectly favor the reproduction (and so the fitness) of the next generation including both their own offspring and that of their siblings, alladding up to a potential case of inclusive fitness in plants
Proton-proton scattering above 3 GeV/c
A large set of data on proton-proton differential cross sections, analyzing
powers and the double polarization parameter A_NN is analyzed employing the
Regge formalism. We find that the data available at proton beam momenta from 3
GeV/c to 50 GeV/c exhibit features that are very well in line with the general
characteristics of Regge phenomenology and can be described with a model that
includes the rho, omega, f_2, and a_2 trajectories and single Pomeron exchange.
Additional data, specifically for spin-dependent observables at forward angles,
would be very helpful for testing and refining our Regge model.Comment: 16 pages, 19 figures; revised version accepted for publication in
EPJ
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