Centromeric banding pattern of mitotic chromosomes in Vigna vexillata (TVnu 73)

Vigna vexillata chromosome characterization was carried out using the Leishman C- banding technique. The results showed that the chromosomes mostly exhibited bands at both the centromeric and telomeric regions. These bands will serve, as a valuable marker for the identification of the chromosomes. Chromosomes 2 were the most variable and differed from the other chromosomes by the presence of satellite on the short arm. Diploid chromosome numbers of 22 consisting of 11 pairs of homologues were observed for V. vexillata. The homologues chromosomes were arranged in the descending order. The idiogram representing the chromosomes was also constructed.African Journal of Biotechnology Vol. 4 (5), pp. 400-402, 200

A genome-wide scan divulges key Loci involved in resistance to aphids (Aphis craccivora) in cowpea (Vigna unguiculata)

Open Access Journal; Published online: 01 Nov 2022Cowpea aphids (Aphis craccivora Koch) double as a direct damaging pest and a virus vector to cowpea, threatening the economic yield of the crop. Given the multiple ecotypes, different alleles have been implicated in aphid resistance, necessitating the identification of key genes involved. The present study implemented a genome-wide scan using 365 cowpea mini-core accessions to decipher loci involved in resistance to aphid ecotype from Kano, Nigeria. Accessions were artificially inoculated with A. craccivora in insect-proof cages and damage severity assessed at 21 days after infestation. Significant phenotypic differences based on aphid damage severity were registered among the accessions. Skewed phenotypic distributions were depicted in the population, suggesting the involvement of major genes in the control of resistance. A genome-wide scan identified three major regions on chromosomes Vu10, Vu08 and Vu02, and two minor ones on chromosomes Vu01 and Vu06, that were significantly associated with aphid resistance. These regions harbored several genes, out of which, five viz Vigun01g233100.1, Vigun02g088900.1, Vigun06g224900.1, Vigun08g030200.1 and Vigun10g031100.1 were the most proximal to the peak single nucleotide polymorphisms (SNPs) positions. These genes are expressed under stress signaling, mechanical wounding and insect feeding. The uncovered loci contribute towards establishing a marker-assisted breeding platform and building durable resistance against aphids in cowpea

Evaluation of cowpea mini core accessions for resistance to flower bud thrips Megalurothrips sjostedti Trybom (Thysanoptera: Thripidae)

Open Access ArticleThe flower bud thrips, Megalurothrips sjostedti Trybom (Thysanoptera: Thripidae), is an economically important pest of cowpea in sub‐Saharan Africa. Varietal resistance is the most preferred, environmentally friendly, cost‐effective and sustainable option for controlling this pest. The objective of this study was to identify sources of resistance to M. sjostedti among mini core accessions from the largest world cowpea germplasm collection maintained at the International Institute of Tropical Agriculture (IITA). The study was conducted during the 2015 and 2016 cropping seasons where 365 accessions were screened under field conditions. Each accession was rated visually for thrips damage score, flower abortion rate, number of pods per plant and number of thrips per flower. The resistance levels observed in genotypes TVu8631, TVu16368, TVu8671 and TVu7325 were similar to that of the resistant check “Sanzisabinli” (called Sanzi) during both seasons. In addition, 56 mini core genotypes showed moderate resistance to thrips damage. High heritability values were associated with thrips damage scores at 65 days after planting (0.60), percentage of effective peduncles (0.59), flower bud abortion rate (0.59), number of pods per plant (0.51) and number of peduncles with pods (0.5). The accessions identified with good levels of resistance to flower bud thrips will be used in cowpea breeding programs to develop improved resistant varieties

Evaluation of cowpea accessions for resistance to flower bud thrips (Megalurothrips sjostedti) in Mali

Open Access JournalFlower bud thrips (Megalurothrips sjostedti) is one of the most damaging pests to cowpea in Africa and varietal resistance is one of the effective approaches to minimize the pest damage. Study was conducted to assess variability among 117 genotypes in addition to two resistant (Sanzisabinli and TVu 1509) and one susceptible (Vita7) checks at Cinzana and N’Tarla locations under natural and artificial infestations of thrips. Parameters such as total number of pods per plant and damage scoring were used to assess the test entries. Genotypes CIPEA82672, Suivita2, TVu 1509 and Sanzisabinli were found highly tolerant, Diaye and TVu7677 moderately tolerant whilst nine genotypes were found tolerant to thrips attacks. CIPEA82672 and Suivita2 had higher grain yield than the resistant checks. Year by genotype, year by location and year by location by genotype interactions were significant for most traits. Genotype by genotype by environment (GGE) effect on yield showed CIPEA82672 most stable across both locations while Suivita2 was only stable at N’Tarla. High broad sense heritability (H2b) was observed for some traits such as damage scoring across locations. Highest genotypic coefficient of variation (GCV) of 81.24 and phenotypic coefficient of variation (PCV) of 75.62 were attributed to total number of pods per plant. Positive correlations were detected between the damage scoring and the number of adult thrips from Cinzana (R2= 0.264) and N’Tarla (R2= 0.603) locations. Confirmation of identified cowpea genotypes highly and moderately tolerant to thrips attacks could be used to improve farmers’ preferred cowpea genotypes susceptible to thrips

Genetic diversity and population structure of cowpea [Vigna unguiculata (L.)Walp.] germplasm collected from Togo based on DArT markers

Open Access Journal; Published online: 20 Sep 2021Crop genetic diversity is a sine qua non for continuous progress in the development of improved varieties, hence the need for germplasm collection, conservation and characterization. Over the years, cowpea has contributed immensely to the nutrition and economic life of the people in Togo. However, the bulk of varieties grown by farmers are landraces due to the absence of any serious genetic improvement activity on cowpea in the country. In this study, the genetic diversity and population structure of 255 cowpea accessions collected from five administrative regions and the agricultural research institute of Togo were assessed using 4600 informative diversity array technology (DArT) markers. Among the regions, the polymorphic information content (PIC) ranged from 0.19 to 0.27 with a mean value of 0.25. The expected heterozygosity (He) varied from 0.22 to 0.34 with a mean value of 0.31, while the observed heterozygosity (Ho) varied from 0.03 to 0.07 with an average of 0.05. The average inbreeding coefficient (FIS) varied from 0.78 to 0.89 with a mean value of 0.83, suggesting that most of the accessions are inbred. Cluster analysis and population structure identified four groups with each comprising accessions from the six different sources. Weak to moderate differentiation was observed among the populations with a genetic differentiation index varying from 0.014 to 0.117. Variation was highest (78%) among accessions within populations and lowest between populations (7%). These results revealed a moderate level of diversity among the Togo cowpea germplasm. The findings of this study constitute a foundation for genetic improvement of cowpea in Togo

Molecular fingerprinting and hybridity authentication in cowpea using single nucleotide polymorphism based kompetitive Allele-Specific PCR assay

Open Access Journal; Published online: 05 Oct 2021Optimization of a breeding program for increased genetic gain requires quality assurance (QA) and quality control (QC) at key phases of the breeding process. One vital phase in a breeding program that requires QC and QA is the choice of parents and successful hybridizations to combine parental attributes and create variations. The objective of this study was to determine parental diversity and confirm hybridity of cowpea F1 progenies using KASP (Kompetitive Allele-Specific PCR)-based single nucleotide polymorphism (SNP) markers. A total of 1,436 F1 plants were derived from crossing 220 cowpea breeding lines and landraces to 2 elite sister lines IT99K-573-1-1 and IT99K-573-2-1 as male parents, constituting 225 cross combinations. The progenies and the parents were genotyped with 17 QC SNP markers via high-throughput KASP genotyping assay. The QC markers differentiated the parents with mean efficiency of 37.90% and a range of 3.4–82.8%, revealing unique fingerprints of the parents. Neighbor-Joining cladogram divided the 222 parents into 3 clusters. Genetic distances between parents ranged from 0 to 3.74 with a mean of 2.41. Principal component analysis (PCA) depicted a considerable overlap between parents and F1 progenies with more scatters among parents than the F1s. The differentiation among parents and F1s was best contributed to by 82% of the markers. As expected, parents and F1s showed a significant contrast in proportion of heterozygous individuals, with mean values of 0.02 and 0.32, respectively. KASP markers detected true hybridity with 100% success rate in 72% of the populations. Overall, 79% of the putative F1 plants were true hybrids, 14% were selfed plants, and 7% were undetermined due to missing data and lack of marker polymorphism between parents. The study demonstrated an effective application of KASP-based SNP assay in fingerprinting, confirmation of hybridity, and early detection of false F1 plants. The results further uncovered the need to deploy markers as a QC step in a breeding program

Essential versus accessory aspects of cell death: recommendations of the NCCD 2015

Cells exposed to extreme physicochemical or mechanical stimuli die in an uncontrollable manner, as a result of their immediate structural breakdown. Such an unavoidable variant of cellular demise is generally referred to as ‘accidental cell death’ (ACD). In most settings, however, cell death is initiated by a genetically encoded apparatus, correlating with the fact that its course can be altered by pharmacologic or genetic interventions. ‘Regulated cell death’ (RCD) can occur as part of physiologic programs or can be activated once adaptive responses to perturbations of the extracellular or intracellular microenvironment fail. The biochemical phenomena that accompany RCD may be harnessed to classify it into a few subtypes, which often (but not always) exhibit stereotyped morphologic features. Nonetheless, efficiently inhibiting the processes that are commonly thought to cause RCD, such as the activation of executioner caspases in the course of apoptosis, does not exert true cytoprotective effects in the mammalian system, but simply alters the kinetics of cellular demise as it shifts its morphologic and biochemical correlates. Conversely, bona fide cytoprotection can be achieved by inhibiting the transduction of lethal signals in the early phases of the process, when adaptive responses are still operational. Thus, the mechanisms that truly execute RCD may be less understood, less inhibitable and perhaps more homogeneous than previously thought. Here, the Nomenclature Committee on Cell Death formulates a set of recommendations to help scientists and researchers to discriminate between essential and accessory aspects of cell death

Legume breeding and seed systems for improved livelihoods and impact

The Tropical Legumes III project aims to reduce food insecurity in drought-prone areas of Sub Saharan Africa (SSA) and South Asia (SA), through improved productivity and production of four major grain legumes – chickpea, common bean, cowpea and groundnut. This is being sone by conducting research under three complementary research and delivery pillars: support for the development and release of farmer-preferred varieties; strengthening of the legume breeding capacity of partner CGIAR centers (ICRISAT, IITA and CIAT), and national partners Burkina Faso, Ghana, Mali, Nigeria, Ethiopia, Tanzania and Uganda; and establishment of sustainable seed delivery systems that service the needs of small-holderfarmers. Significant achievements have been recorded. Breeding program assessments have been completed in all countries and improvement plans developed for execution. New seed varieties (163) have been released and are fast replacing the old ruling seed varieties in all target countries. Thirty seven national partners were trained at MSc and PhD levels. As a result of the enhanced skills and knowledge of seed value chain actors, seed production significantly increased by 221% (from 139,048 to 446,359 tons) in seven years. Since 2007, improved varieties have been adopted on at least 2 million hectares and more than $448 million has been generated from the project funding and nearly$976 million from the project and investment partners. For each dollar invested, the project generated $9 with direct project investment or$20 with partnership’s investment, and again $20 when using adoption rate based estimate. These achievements and implementation challenges will be discussed

Exosomes Communicate Protective Messages during Oxidative Stress; Possible Role of Exosomal Shuttle RNA

BACKGROUND: Exosomes are small extracellular nanovesicles of endocytic origin that mediate different signals between cells, by surface interactions and by shuttling functional RNA from one cell to another. Exosomes are released by many cells including mast cells, dendritic cells, macrophages, epithelial cells and tumour cells. Exosomes differ compared to their donor cells, not only in size, but also in their RNA, protein and lipid composition. METHODOLOGY/PRINCIPAL FINDINGS: In this study, we show that exosomes, released by mouse mast cells exposed to oxidative stress, differ in their mRNA content. Also, we show that these exosomes can influence the response of other cells to oxidative stress by providing recipient cells with a resistance against oxidative stress, observed as an attenuated loss of cell viability. Furthermore, Affymetrix microarray analysis revealed that the exosomal mRNA content not only differs between exosomes and donor cells, but also between exosomes derived from cells grown under different conditions; oxidative stress and normal conditions. Finally, we also show that exposure to UV-light affects the biological functions associated with exosomes released under oxidative stress. CONCLUSIONS/SIGNIFICANCE: These results argue that the exosomal shuttle of RNA is involved in cell-to-cell communication, by influencing the response of recipient cells to an external stress stimulus