A comparison of two models to predict nitrogen dynamics in organic agricultural systems

Two publicly available crop/soil models were compared. These were the EU-Rotate_N model (www.warwick.ac.uk/go/eurotaten) and the NDICEA model (www.ndicea.nl). Each simulation was also compared to measured data from an organically managed site in the English Midlands. Results showed that, overall, EU-Rotate_N gave a better estimation of soil mineral nitrogen, particularly after the incorporation of a long-term fertility-building crop. This model has a lot of flexibility but is aimed at researchers and requires more work before it is ready to be used by farmers or advisors. The NDICEA model is much simpler to use with a user-friendly interface

Functions of the novel RhoGAP proteins RGA-3 and RGA-4 in the germ line and in the early embryo of C. elegans

We have identified two redundant GTPase activating proteins (GAPs) – RGA-3 and RGA-4 – that regulate Rho GTPase function at the plasma membrane in early Caenorhabditis elegans embryos. Knockdown of both RhoGAPs resulted in extensive membrane ruffling, furrowing and pronounced pseudo-cleavages. In addition, the non-muscle myosin NMY-2 and RHO-1 accumulated on the cortex at sites of ruffling. RGA-3 and RGA-4 are GAPs for RHO-1, but most probably not for CDC-42, because only RHO-1 was epistatic to the two GAPs, and the GAPs had no obvious influence on CDC-42 function. Furthermore, knockdown of either the RHO-1 effector, LET-502, or the exchange factor for RHO-1, ECT-2, alleviated the membrane-ruffling phenotype caused by simultaneous knockdown of both RGA-3 and RGA-4 [rga-3/4 (RNAi)]. GFP::PAR-6 and GFP::PAR-2 were localized at the anterior and posterior part of the early C. elegans embryo, respectively showing that rga-3/4 (RNAi) did not interfere with polarity establishment. Most importantly, upon simultaneous knockdown of RGA-3, RGA-4 and the third RhoGAP present in the early embryo, CYK-4, NMY-2 spread over the entire cortex and GFP::PAR-2 localization at the posterior cortex was greatly diminished. These results indicate that the functions of CYK-4 are temporally and spatially distinct from RGA-3 and RGA-4 (RGA-3/4). RGA-3/4 and CYK-4 also play different roles in controlling LET-502 activation in the germ line, because rga-3/4 (RNAi), but not cyk-4 (RNAi), aggravated the let-502(sb106) phenotype. We propose that RGA-3/4 and CYK-4 control with which effector molecules RHO-1 interacts at particular sites at the cortex in the zygote and in the germ line

High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome.

As a step towards trait mapping in the halophyte seashore paspalum (Paspalum vaginatum Sw.), we developed an F1 mapping population from a cross between two genetically diverse and heterozygous accessions, 509022 and HI33. Progeny were genotyped using a genotyping-by-sequencing (GBS) approach and sequence reads were analyzed for single nucleotide polymorphisms (SNPs) using the UGbS-Flex pipeline. More markers were identified that segregated in the maternal parent (HA maps) compared to the paternal parent (AH maps), suggesting that 509022 had overall higher levels of heterozygosity than HI33. We also generated maps that consisted of markers that were heterozygous in both parents (HH maps). The AH, HA and HH maps each comprised more than 1000 markers. Markers formed 10 linkage groups, corresponding to the ten seashore paspalum chromosomes. Comparative analyses showed that each seashore paspalum chromosome was syntenic to and highly colinear with a single sorghum chromosome. Four inversions were identified, two of which were sorghum-specific while the other two were likely specific to seashore paspalum. These high-density maps are the first available genetic maps for seashore paspalum. The maps will provide a valuable tool for plant breeders and others in the Paspalum community to identify traits of interest, including salt tolerance

A One-dimensional Ensemble Forecast and Assimilation System for Fog Prediction

A probabilistic fog forecast system was designed based on two high resolution numerical 1-D models called COBEL and PAFOG. The 1-D models are coupled to several 3-D numerical weather prediction models and thus are able to consider the effects of advection. To deal with the large uncertainty inherent to fog forecasts, a whole ensemble of 1-D runs is computed using the two different numerical models and a set of different initial conditions in combination with distinct boundary conditions. Initial conditions are obtained from variational data assimilation, which optimally combines observations with a first guess taken from operational 3-D models. The design of the ensemble scheme computes members that should fairly well represent the uncertainty of the current meteorological regime. Verification for an entire fog season reveals the importance of advection in complex terrain. The skill of 1-D fog forecasts is significantly improved if advection is considered. Thus the probabilistic forecast system has the potential to support the forecaster and therefore to provide more accurate fog forecast

Analysis of Radiation Discretization for Modelling a Spark Gap for Surge Currents

In this paper we address a method for spectrally resolved radiation modelling in thermal plasmas encountered in surge protective devices based on spark gaps. Compared to most switching applications, power input and plasma pressure are much higher which leads to an optically thick plasma with line broadening and enhanced wall ablation. In this situation it is possible to capture the full effect of spectrally resolved radiation on plasma dynamics by performing line-by-line calculations with downsampled absorption spectra. We show that it is possible to achieve radiation convergence with 1000 lines. Approaches for a further reduction of calculation times using band-averaged models and $\kappa$-group models are discussed. The κ-group model is based upon a grouping of the absorption coefficients into subgroups with different ranges of κ before averaging. The spectral calculation results are compared to the approximative methods and significant differences for Rosseland means are observed

A comparison of two models to predict nitrogen dynamics in organic agricultural systems

Two publicly available crop/soil models were compared. These were the EU-Rotate_N model (www.warwick.ac.uk/go/eurotaten) and the NDICEA model (www.ndicea.nl). Each simulation was also compared to measured data from an organically managed site in the English Midlands. Results showed that, overall, EU-Rotate_N gave a better estimation of soil mineral nitrogen, particularly after the incorporation of a long-term fertility-building crop. This model has a lot of flexibility but is aimed at researchers and requires more work before it is ready to be used by farmers or advisors. The NDICEA model is much simpler to use with a user-friendly interface

A Simple, Quick, and Precise Procedure for the Determination of Water in Organic Solvents

A procedure for the UV/VIS-spectroscopic determination of water by the use of a solvatochromic pyridiniumphenolate betaine is given. The water content of organic solvents is calculated by a two parameter equation from λmax of the dye. A typical, detection limit is of the order of 1 mg in 1 ml solvent for routine spectrometers. The parameters for the determination of water are given for a number of commonly used solvents

Fundamental stellar parameters of zeta Pup and gamma^2 Vel from HIPPARCOS data

We report parallax measurements by the HIPPARCOS satellite of zeta Puppis and gamma^2 Velorum. The distance of zeta Pup is d=429 (+120/ -77) pc, in agreement with the commonly adopted value to Vela OB2. However, a significantly smaller distance is found for the gamma^2 Vel system: d=258 (+41/-31) pc. The total mass of gamma^2 Vel derived from its parallax, the angular size of the semi-major axis as measured with intensity interferometry, and the period is M(WR+O)=29.5 (+/-15.9) Msun. This result favors the orbital solution of Pike et al. (1983) over that of Moffat et al. (1986). The stellar parameters for the O star companion derived from line blanketed non-LTE atmosphere models are: Teff=34000 (+/-1500) K, log L/Lsun=5.3 (+/-0.15) from which an evolutionary mass of M=29 (+/-4) Msun and an age of 4.0 (+0.8/-0.5) Myr is obtained from single star evolutionary models. With non-LTE model calculations including He and C we derive a luminosity log L/Lsun~4.7 (+/-0.2) for the WR star. The mass-luminosity relation of hydrogen-free WR stars implies a mass of M(WR)~5 (+/-1.5) Msun. From our data we favor an age of ~10 Myr for the bulk of the Vela OB2 stars. Evolutionary scenarios for zeta Pup and gamma^2 Vel are discussed in the light of our results.Comment: Submitted to ApJ Letters (misprints corrected