Light quark masses from UKQCD's dynamical simulations with O(a)-improved Wilson fermions

I present preliminary results on the light quark masses from a partially quenched analysis of UKQCD's dynamical datasets.Comment: Lattice2002(spectrum), 3 pages, 3 figures, Edinburgh preprint 2002/1

Multiple Satellite Observations of Cloud Cover in Extratropical Cyclones

Using cloud observations from NASA Moderate Resolution Imaging Spectroradiometer, Multiangle Imaging Spectroradiometer, and CloudSat-CALIPSO, composites of cloud fraction in southern and northern hemisphere extratropical cyclones are obtained for cold and warm seasons between 2006 and 2010, to assess differences between these three data sets, and between summer and winter cyclones. In both hemispheres and seasons, over the open ocean, the cyclone-centered cloud fraction composites agree within 5% across the three data sets, but behind the cold fronts, or over sea ice and land, the differences are much larger. To supplement the data set comparison and learn more about the cyclones, we also examine the differences in cloud fraction between cold and warm season for each data set. The difference in cloud fraction between cold and warm season southern hemisphere cyclones is small for all three data sets, but of the same order of magnitude as the differences between the data sets. The cold-warm season contrast in northern hemisphere cyclone cloud fractions is similar for all three data sets: in the warm sector, the cold season cloud fractions are lower close to the low, but larger on the equator edge than their warm season counterparts. This seasonal contrast in cloud fraction within the cyclones warm sector seems to be related to the seasonal differences in moisture flux within the cyclones. Our analysis suggests that the three different data sets can all be used confidently when studying the warm sector and warm frontal zone of extratropical cyclones but caution should be exerted when studying clouds in the cold sector

Framework and tool for rapid assessment of stream susceptibility to hydromodification

ABSTRACT: Changes in streamflow and sediment loading associated with urban development have the potential to exacerbate channel erosion, and result in impacts to wetland, riparian, and stream habitats, as well as infrastructure and property losses. The typical ''one-size-fits-all'' management prescription of flow control with retention or detention basins has not been wholly effective, pointing to a need for improved management strategies and tools for mitigating the impacts of ''hydromodification.'' We present an approach for developing screeninglevel tools for assessing channel susceptibility to hydromodification, and describe a novel tool for rapid, fieldbased assessments of the relative susceptibility of stream segments. The tool is based on the results of extensive field surveys, which indicate that susceptibility is the driver of channel response, not the magnitude of urbanization. A combination of relatively simple, but quantitative, field indicators are used as input parameters for a set of decision trees that follow a logical progression in assigning categorical susceptibility ratings to the channel segment being assessed. The susceptibility rating informs the level of data collection, modeling, and ultimate mitigation efforts that can be expected for a particular stream segment type. The screening approach represents a critical first step toward tailoring hydromodification management strategies and mitigation measures to different stream types and geomorphic settings

Extracellular Matrix Dynamics in Hepatocarcinogenesis: a Comparative Proteomics Study of PDGFC Transgenic and Pten Null Mouse Models

We are reporting qualitative and quantitative changes of the extracellular matrix (ECM) and associated receptor proteomes, occurring during the transition from liver fibrosis and steatohepatitis to hepatocellular carcinoma (HCC). We compared two mouse models relevant to human HCC: PDGFC transgenic (Tg) and Pten null mice, models of disease progression from fibrosis and steatohepatitis to HCC. Using mass spectrometry, we identified in the liver of both models proteins for 26 collagen-encoding genes, providing the first evidence of expression at the protein level for 16 collagens. We also identified post-transcriptional protein variants for six collagens and lysine hydroxylation modifications for 14 collagens. Tumor-associated collagen proteomes were similar in both models with increased expression of collagens type IV, VI, VII, X, XIV, XV, XVI, and XVIII. Splice variants for Col4a2, Col6a2, Col6a3 were co-upregulated while only the short form of Col18a1 increased in the tumors. We also identified tumor specific increases of nidogen 1, decorin, perlecan, and of six laminin subunits. The changes in these non-collagenous ECM proteins were similar in both models with the exception of laminin β3, detected specifically in the Pten null tumors. Pdgfa and Pdgfc mRNA expression was increased in the Pten null liver, a possible mechanism for the similarity in ECM composition observed in the tumors of both models. In contrast and besides the strong up-regulation of integrin α5 protein observed in the liver tumors of both models, the expression of the six other integrins identified was specific to each model, with integrins α2b, α3, α6, and β1 up-regulated in Pten null tumors and integrins α8 and β5 up-regulated in the PDGFC Tg tumors. In conclusion, HCC–associated ECM proteins and ECM–integrin networks, common or specific to HCC subtypes, were identified, providing a unique foundation to using ECM composition for HCC classification, diagnosis, prevention, or treatment

'Ava’: a Beaker-associated woman from a cist at Achavanich, Highland, and the story of her (re-) discovery and subsequent study

This contribution describes the discovery and subsequent investigation of a cist in a rock-cut pit at Achavanich, Highland. Discovered and excavated in 1987, the cist was found to contain the tightly contracted skeletal remains of a young woman, accompanied by a Beaker, three flint artefacts and a cattle scapula. Initial post excavation work established a date for the skeleton together with details of her age and sex, and preliminary pollen analysis of sediments attaching to the Beaker was undertaken. The findings were never fully published and, upon the death of the excavator, Robert Gourlay, the documentary archive was left in the Highland Council Archaeology Unit. Fresh research in 2014–17, initiated and co-ordinated by the first-named author and funded by the Society of Antiquaries of Scotland with assistance from National Museums Scotland, the Natural History Museum and Harvard Medical School, has produced a significant amount of new information on the individual and on some of the items with which she was buried. This new information includes two further radiocarbon dates, a more detailed osteological report, isotopic information pertaining to the place where she had been raised and to her diet, histological information on the decomposition of her body, and genetic information that sheds light on her ancestry, her hair, eye and skin colour and her intolerance of lactose. (This is the first time that an ancient DNA report has been published in the Proceedings.) Moreover, a facial reconstruction adds virtual flesh to her bones. The significance of this discovery within the Chalcolithic to Early Bronze Age of this part of Scotland is discussed, along with the many and innovative ways in which information on this individual, dubbed ‘Ava’, has been disseminated around the world.Copyright © 2018 rests with the Society and the individual authors. Except where otherwise noted, this work is licensed under CreativeCommons Attribution-NonCommercial-No Derivatives licence.https://creativecommons.org/licenses/by-nc-nd/4.0/ The permission to reproduce the Society's copyright-protected ma-terial does not extend to any material which is identified as being the copyright of a third party. Authorisation to reproduce such material must be obtained from the copyright holders concerned. The attached file is the published pdf

A-Train Based Observational Metrics for Model Evaluation in Extratropical Cyclones

Extratropical cyclones contribute most of the precipitation in the midlatitudes, i.e. up to 70 during winter in the northern hemisphere, and can generate flooding, extreme winds, blizzards and have large socio-economic impacts. As such, it is important that general circulation models (GCMs) accurately represent these systems so their evolution in a warming climate can be understood. However, there are still uncertainties on whether warming will increase their frequency of occurrence, their intensity and how much rain or snow they bring. Part of the issue is that models have trouble representing their strength, but models also have biases in the amount of clouds and precipitation they produce. This is caused by potential issues in various aspects of the models: convection, boundary layer, and cloud scheme to only mention a few. In order to pinpoint which aspects of the models need improvement for a better representation of extratropical cyclone precipitation and cloudiness, we will present A-train based observational metrics: cyclone-centered, warm and cold frontal composites of cloud amount and type, precipitation rate and frequency of occurrence. Using the same method to extract similar fields from the model, we will present an evaluation of the GISS-ModelE2 and the IPSL-LMDZ-5B models, based on their AR5 and more recent versions. The AR5 version of the GISS model underestimates cloud cover in extratropical cyclones while the IPSL AR5 version overestimates it. In addition, we will show how the observed CloudSat-CALIPSO cloud vertical distribution across cold fronts changes with moisture amount and cyclone strength, and test if the two models successfully represent these changes. We will also show how CloudSat-CALIPSO derived cloud type (i.e. convective vs. stratiform) evolves across warm fronts as cyclones age, and again how this is represented in the models. Our third process-based analysis concerns cumulus clouds in the post-cold frontal region and how their amount relates to the stability of the boundary layer. This test uses Aqua cloud and vertical atmospheric profiles and when applied to the model output can help assess the accuracy of the convection, boundary layer and cloud scheme

Community-powered urban stream restoration: A vision for sustainable and resilient urban ecosystems

Urban streams can provide amenities to people living in cities, but those benefits are reduced when streams become degraded, potentially even causing harm (disease, toxic compounds, etc.). Governments and institutions invest resources to improve the values and services provided by urban streams; however, the conception, development, and implementation of such projects may not include meaningful involvement of community members and other stakeholders. Consequently, project objectives may be misaligned with community desires and needs, and projects may fail to achieve their goals. In February 2020, the 5(th) Symposium on Urbanization and Stream Ecology, an interdisciplinary meeting held every 3 to 5 y, met in Austin, Texas, USA, to explore new approaches to urban stream projects, including ways to maximize the full range of potential benefits by better integrating community members into project identification and decision making. The symposium included in-depth discussion about 4 nearby field case studies, participation of multidisciplinary urban stream experts from 5 continents, and input from the Austin community. Institutional barriers to community inclusion were identified and analyzed using real-world examples, both from the case studies and from the literature, which clarified disparities in power, equity, and values. Outcomes of the symposium have been aggregated into a vision that challenges the present institutional approach to urban stream management and a set of strategies to systematically address these barriers to improve restoration solutions. Integrating community members and other stakeholders throughout the urban restoration process, and a transparent decision-making process to resolve divergent objectives, can help identify appropriate goals for realizing both the ecological and social benefits of stream restoration

LSST: from Science Drivers to Reference Design and Anticipated Data Products

(Abridged) We describe here the most ambitious survey currently planned in the optical, the Large Synoptic Survey Telescope (LSST). A vast array of science will be enabled by a single wide-deep-fast sky survey, and LSST will have unique survey capability in the faint time domain. The LSST design is driven by four main science themes: probing dark energy and dark matter, taking an inventory of the Solar System, exploring the transient optical sky, and mapping the Milky Way. LSST will be a wide-field ground-based system sited at Cerro Pach\'{o}n in northern Chile. The telescope will have an 8.4 m (6.5 m effective) primary mirror, a 9.6 deg$^2$ field of view, and a 3.2 Gigapixel camera. The standard observing sequence will consist of pairs of 15-second exposures in a given field, with two such visits in each pointing in a given night. With these repeats, the LSST system is capable of imaging about 10,000 square degrees of sky in a single filter in three nights. The typical 5$\sigma$ point-source depth in a single visit in $r$ will be $\sim 24.5$ (AB). The project is in the construction phase and will begin regular survey operations by 2022. The survey area will be contained within 30,000 deg$^2$ with $\delta<+34.5^\circ$, and will be imaged multiple times in six bands, $ugrizy$, covering the wavelength range 320--1050 nm. About 90\% of the observing time will be devoted to a deep-wide-fast survey mode which will uniformly observe a 18,000 deg$^2$ region about 800 times (summed over all six bands) during the anticipated 10 years of operations, and yield a coadded map to $r\sim27.5$. The remaining 10\% of the observing time will be allocated to projects such as a Very Deep and Fast time domain survey. The goal is to make LSST data products, including a relational database of about 32 trillion observations of 40 billion objects, available to the public and scientists around the world.Comment: 57 pages, 32 color figures, version with high-resolution figures available from https://www.lsst.org/overvie