Energy minimization problem in two-level dissipative quantum control: meridian case

International audienceWe analyze the energy-minimizing problem for a two-level dissipative quantum system described by the Kossakowsky-Lindblad equation. According to the Pontryagin Maximum Principle (PMP), minimizers can be selected among normal and abnormal extremals whose dynamics are classified according to the values of the dissipation parameters. Our aim is to improve our previous analysis concerning 2D solutions in the case where the Hamiltonian dynamics are integrable

Automatically tracking feeding behavior in populations of foraging worms

C. elegans feeds on bacteria and other small microorganisms which it ingests using its pharynx, a neuromuscular pump. Currently, measuring feeding behavior requires tracking a single animal, indirectly estimating food intake from population-level metrics, or using restrained animals. Therefore, to enable large throughput feeding measurements of unrestrained, crawling worms on agarose plates, we developed an imaging protocol and a complementary image analysis tool called PharaGlow. We image up to 50 freely moving worms simultaneously and extract locomotion and feeding behaviors. Our tool reliably detects pharyngeal pumping in adult worms with a maximum deviation of 5% in the number of pumps compared to an expert annotator. We demonstrate the tool's robustness and highthroughput capabilities by measuring feeding in different use-case scenarios. This includes tracing pharyngeal dynamics during development, revealing their highly conserved nature throughout all life cycle stages. We also observed pumping after food deprivation, corroborating previous studies in which starvation time strongly influences pumping. Finally, we further validated our behavioral tracker by exploring two previously characterized pumping defective mutants: unc-31 and eat-18. Remarkably, our analysis of eat-18 mutants identified unreported defects in pumping and overall locomotion regulation, highlighting the potential of this toolkit. Pharaglow therefore enables the observation and analysis of the temporal dynamics of food intake with high-throughput and precision in a user-friendly system

Automatically tracking feeding behavior in populations of foraging C. elegans

Caenorhabditis elegans feeds on bacteria and other small microorganisms which it ingests using its pharynx, a neuromuscular pump. Currently, measuring feeding behavior requires tracking a single animal, indirectly estimating food intake from population-level metrics, or using restrained animals. To enable large throughput feeding measurements of unrestrained, crawling worms on agarose plates at a single worm resolution, we developed an imaging protocol and a complementary image analysis tool called PharaGlow. We image up to 50 unrestrained crawling worms simultaneously and extract locomotion and feeding behaviors. We demonstrate the tool’s robustness and high-throughput capabilities by measuring feeding in different use-case scenarios, such as through development, with genetic and chemical perturbations that result in faster and slower pumping, and in the presence or absence of food. Finally, we demonstrate that our tool is capable of long-term imaging by showing behavioral dynamics of mating animals and worms with different genetic backgrounds. The low-resolution fluorescence microscopes required are readily available in C. elegans laboratories, and in combination with our python-based analysis workflow makes this methodology easily accessible. PharaGlow therefore enables the observation and analysis of the temporal dynamics of feeding and locomotory behaviors with high-throughput and precision in a user-friendly system.eLife digest: A small worm called C. elegans is constantly hungry. It spends all its time looking for food or eating. Hunger and environmental factors, like light, influence its feeding behavior. Studying these worms has helped scientists learn how feeding affects health, longevity, and aging. Feeding studies might also help scientists learn how the nervous system works and how it controls feeding. Most studies have used one of two approaches. Scientists may measure how much food a group of C. elegans eat by measuring food before and after it is offered to the worms. Or they restrain individual worms and measure the movement of a tube-like muscle, called the pharynx, which the animals use to vacuum up food. Restraining the worms can alter their behavior or brain activity, and studying group feeding habits may miss individual differences, so neither is optimal. Ideally, scientists could measure the feeding activity of many free-ranging worms, but because the movements of the pharynx are small, that too can be a challenge. Bonnard, Liu et al. developed a software tool that automatically detects and measures feeding behavior in a group of about 30 free-ranging C. elegans simultaneously. In the experiments, Bonnard, Liu et al. genetically engineered worms expressing a fluorescent protein in their pharynx, making it possible to measure its movements with a microscope. They used the microscope to capture images of 30-50 animals at a time as they foraged for food in a dish. Then, they used the software to analyze the data they collected. Over three days and five imaging sessions, Bonnard and Liu et al. tracked the feeding behavior of about 1,000 animals under different conditions. The experiments show that the pharynx grows rapidly during early worm development when the worms quadruple their length, but the rate of pharynx muscle contractions stays the same. They also showed the technique could measure feeding behaviors in animals with different genetic backgrounds, ages, or those engaged in behaviors like mating. The tool allows for larger and longer-term studies of worm feeding behaviors than previous approaches. Bonnard, Liu et al. made their software, called PharaGlow, available for use by other researchers. The tool may make feeding measurements a routine part of C. elegans studies. It will allow scientists to gain new insights into the role of feeding in a range of processes, including aging, fitness, mating, and overall health. Follow-up studies could determine if these findings are general strategies that also apply to other animals

Does prenatal diagnosis modify neonatal treatment and early outcome of children with esophageal atresia?

OBJECTIVE: Our study aimed at (1) evaluating neonatal treatment and outcome of neonates with either a prenatal or a postnatal diagnosis of esophageal atresia (EA) and (2) analyzing the impact of prenatal diagnosis on outcome based on the type of EA. STUDY DESIGN: We conducted a population-based study using data from the French National Register for infants with EA born from 2008-2010. We compared prenatal, maternal, and neonatal characteristics among children with prenatal vs postnatal diagnosis and EA types I and III. We defined a composite variable of morbidity (anastomotic esophageal leaks, recurrent fistula, stenosis) and death at 1 year. RESULTS: Four hundred sixty-nine live births with EA were recorded with a prenatal diagnosis rate of 24.3%; 82.2% of EA type I were diagnosed prenatally compared with 17.9% of EA type III (P < .001). Transfer after birth was lower in case of prenatal diagnosis (25.6% vs 82.5%; P < .001). The delay between birth and first intervention did not differ significantly among groups. The defect size was longer among the prenatal diagnosis group (2.61 vs 1.48 cm; P < .001). The composite variables were higher in prenatal diagnosis subset (44% vs 27.6%; P = .003) and in EA type I than in type III (58.1% vs 28.3%; P < .001). CONCLUSION: Despite the excellent survival rate of EA, cases with antenatal detection have a higher morbidity rate related to the EA type (type I and/or long gap). Even though it does not modify neonatal treatment and the 1-year outcome, prenatal diagnosis allows antenatal parental counselling and avoids postnatal transfers

Biodiversity conservation, ecosystem services and organic viticulture: A glass half-full

Organic farming is a promising but still debated option to ensure sustainable agriculture. However, whether organic farming fosters synergies or mitigates tradeoffs between biodiversity, ecosystem services and crop production has rarely been quantified. Here, we investigate relationships between multitrophic diversity (14 taxa above and belowground), yield, natural pest control and soil quality (14 proxies of ecosystem services) in organic and conventional vineyards along a landscape gradient. Organic farming enhanced biodiversity and pest control, but decreased wine production. Compared to conventional systems, multitrophic diversity was 15 % higher, and pest control services were 9 % higher in organic systems, while wine production was 11 % lower. Regardless of management type, we found a strong tradeoff between wine production and pest control, but not between wine production and biodiversity. The landscape context was not a strong moderator of organic farming effects across taxa groups and ecosystem services, but affected specific taxa and ecosystem services, especially natural pest control. Our study reveals that wine production and biodiversity conservation do not necessarily exclude each other, which implies the existence of a safe operating space where biodiversity and wine production can be combined. We conclude that organic farming can contribute to improve the sustainability of viticulture, but needs to be complemented by management options at the local and landscape scales in order to fully balance biodiversity conservation with the simultaneous provision of multiple ecosystem services.This research was funded by the research project SECBIVIT, which was funded through the 2017–2018 Belmont Forum and BiodivERsA joint call for research proposals, under the BiodivScen ERA-Net COFUND program, with the funding organizations: Agencia Estatal de Investigación (Ministerio de Ciencia e Innovación/Spain, grant PCI2018-092938; MCIN/AEI/10.13039/501100011033); Austrian Science Fund (FWF) (grant number I 4025-B32); Federal Ministry of Education and Research (BMBF/Germany) (grant number 031A349I); French National Research Agency (ANR); Netherlands Organization for Scientific Research (NWO); National Science Foundation (grant #1850943); and Romanian Executive Agency for Higher Education, Research, Development, and Innovation Funding (UEFISCDI). The authors also acknowledge the support of the ECOPHYTO 2+ Plan under the grant X4IN33VI (OPERA project) as well as the support the French National Research Agency (ANR) under the grant 20-PCPA-0010 (PPR Vitae, Cultivating the grapevine without pesticides: towards agroecological wine-producing socio-ecosystems). We thank Evelyne Thys and Hugo Hernandez for their help in field sampling, Lionel Delbac for the Lobesia botrana rearing, Alexis Saintilan for identifying pollinators, and Edith Gruber for identifying earthworms

Characteristics and management of congenital esophageal stenosis: findings from a multicenter study.

BACKGROUND: Congenital esophageal stenosis (CES) is a rare condition frequently associated with esophageal atresia (EA). There are limited data from small series about the presentation, treatment, and outcomes of CES. METHODS: Medical records of all patients with CES included in the French Network on Esophageal Malformations and Congenital Diseases were reviewed retrospectively with regard to diagnosis, treatment, and outcome. RESULTS: Over 18 years, 61 patients (30 boys) had CES, and 29 (47%) of these patients also had EA. The mean age at diagnosis was 24 months (1 day to 14 years) and was younger in patients with CES and EA than in those with isolated CES (7 vs. 126 months, p < 0.05). Twenty-one of the 61 patients with CES had no clinical symptoms: in three patients, the findings were incidental, and in 18 of the 29 patients with associated EA, CES was diagnosed at the time of surgical repair of EA or during a postoperative systematic esophageal barium study. In the 40 other patients, at diagnosis, 50% presented with dysphasia, 40% with vomiting, 50% with food impaction, and 42% with respiratory symptoms. Diagnosis of CES was confirmed by esophageal barium study (56/61) and/or esophageal endoscopy (50/61). Sixteen patients had tracheobronchial remnants (TBR), 40 had fibromuscular stenosis (FMS), and five had membrane stenosis (MS). Thirty-four patients (56%) were treated by dilation only (13/34 remained asymptomatic at follow-up); 15 patients were treated by dilation but required later surgery because of failure (4/15 remained asymptomatic at follow-up); and nine patients had a primary surgical intervention (4/9 were asymptomatic at follow-up). Dilation was complicated by esophageal perforation in two patients (3.4%). At follow-up, dysphagia remained in 36% (21/58) of patients, but the incidence did not differ between the EA and the isolated CS groups (10/29 vs. 7/32, p = 0.27). CONCLUSIONS: CS diagnosis can be delayed when associated with EA. Dilation may be effective for treating patients with FMS and MS, but surgical repair is often required for those with TBR. Our results show clearly that, regardless of the therapeutic option, dysphagia occurs frequently, and patients with CES should be followed over the long term

Gamma-ray limits on Galactic 60Fe nucleosynthesis and implications on the Origin of the 26Al emission

The Gamma Ray Imaging Spectrometer (GRIS) recently observed the gamma-ray emission from the Galactic center region. We have detected the 1809 keV Galactic 26Al emission at a significance level of 6.8-sigma but have found no evidence for emission at 1173 keV and 1332 keV, expected from the decay chain of the nucleosynthetic 60Fe. The isotopic abundances and fluxes are derived for different source distribution models. The resulting abundances are between 2.6+-0.4 and 4.5+-0.7 Solar Masses for 26Al and a 2-sigma upper limit for 60Fe between 1.7 and 3.1 Solar Masses. The measured 26Al emission flux is significantly higher than that derived from the CGRO/COMPTEL 1.8 MeV sky map. This suggests that a fraction of the 26Al emission may come from extended sources with a low surface brightness that are invisible to COMPTEL. We obtain a 60Fe to 26Al flux ratio 2-sigma upper limit of 0.14, which is slightly lower than the 0.16 predicted from current nucleosynthesis models assuming that SNII are the major contributors to the galactic 26Al. Since the uncertainties in the predicted fluxes are large (up to a factor of 2), our measurement is still compatible with the theoretical expectations.Comment: to be published in Astroph. Journal Letters, 12 pages, 3 Postscript figures; added reference for introduction, typos adde

Paraphrastic Reformulations in Spoken Corpora

International audienceOur work addresses the automatic detection of paraphrastic reformulation in French spoken corpora. The proposed approach is syn-tagmatic. It is based on specific markers and the specificities of the spoken language. Manual multi-dimensional annotation performed by two annotators provides fine-grained reference data. An automatic method is proposed in order to decide whether sentences contain or not paraphras-tic relations. The obtained results show up to 66.4% precision. Analysis of the manual annotations indicates that few paraphrastic segments show morphological modifications (inflection, derivation or compounding) and that the syntactic equivalence between the segments is seldom respected, as these usually belong to different syntactic categories

Prolonged Fasting Identifies Skeletal Muscle Mitochondrial Dysfunction as Consequence Rather Than Cause of Human Insulin Resistance

OBJECTIVE-Type 2 diabetes and insulin resistance have been associated with mitochondrial dysfunction, but it is debated whether this is a primary factor in the pathogenesis of the disease. To test the concept that mitochondrial dysfunction is secondary to the development of insulin resistance, we employed the unique model of prolonged fasting in humans. Prolonged fasting is a physiologic condition in which muscular insulin resistance develops in the presence of increased free fatty acid (FFA) levels, increased fat oxidation and low glucose and insulin levels. It is therefore anticipated that skeletal muscle mitochondrial function is maintained to accommodate increased fat oxidation unless factors secondary to insulin resistance exert negative effects on mitochondrial function. RESEARCH DESIGN AND METHODS-While in a respiration chamber, twelve healthy males were subjected to a 60 h fast and a 60 h normal fed condition in a randomized crossover design. Afterward, insulin sensitivity was assessed using a hyperinsulinemic-euglycemic clamp, and mitochondrial function was quantified ex vivo in permeabilized muscle fibers using high-resolution respirometry. RESULTS-Indeed, FFA levels were increased approximately ninefold after 60 h of fasting in healthy male subjects, leading to elevated intramuscular lipid levels and decreased muscular insulin sensitivity. Despite an increase in whole-body fat oxidation, we observed an overall reduction in both coupled state 3 respiration and maximally uncoupled respiration in permeabilized skeletal muscle fibers, which could not be explained by changes in mitochondrial density. CONCLUSIONS-These findings confirm that the insulin-resistant State has secondary negative effects on mitochondrial function. Given the low insulin and glucose levels after prolonged fasting, hyperglycemia and insulin action per se can be excluded as underlying mechanisms, pointing toward elevated plasma FFA and/or intramuscular fat accumulation as possible causes for the observed reduction in mitochondrial capacity. Diabetes 59: 2117-2125, 201