Survey strategy optimization for the Atacama Cosmology Telescope

In recent years there have been significant improvements in the sensitivity and the angular resolution of the instruments dedicated to the observation of the Cosmic Microwave Background (CMB). ACTPol is the first polarization receiver for the Atacama Cosmology Telescope (ACT) and is observing the CMB sky with arcmin resolution over about 2000 sq. deg. Its upgrade, Advanced ACTPol (AdvACT), will observe the CMB in five frequency bands and over a larger area of the sky. We describe the optimization and implementation of the ACTPol and AdvACT surveys. The selection of the observed fields is driven mainly by the science goals, that is, small angular scale CMB measurements, B-mode measurements and cross-correlation studies. For the ACTPol survey we have observed patches of the southern galactic sky with low galactic foreground emissions which were also chosen to maximize the overlap with several galaxy surveys to allow unique cross-correlation studies. A wider field in the northern galactic cap ensured significant additional overlap with the BOSS spectroscopic survey. The exact shapes and footprints of the fields were optimized to achieve uniform coverage and to obtain cross-linked maps by observing the fields with different scan directions. We have maximized the efficiency of the survey by implementing a close to 24 hour observing strategy, switching between daytime and nighttime observing plans and minimizing the telescope idle time. We describe the challenges represented by the survey optimization for the significantly wider area observed by AdvACT, which will observe roughly half of the low-foreground sky. The survey strategies described here may prove useful for planning future ground-based CMB surveys, such as the Simons Observatory and CMB Stage IV surveys.Comment: 14 Pages, 9 Figures, 4 Table

The Role of Forest Elephants in Shaping Tropical Forest-Savanna Coexistence

Forest edges that border savanna are dynamic features of tropical landscapes. Although the role of fire in determining edge dynamics has been relatively well explored, the role of mega-herbivores, specifically elephants, has not received as much attention. We investigated the role of forest elephants in shaping forest edges of the forest–savanna mosaic in Lopé National Park, Gabon. Using forty camera traps, we collected 1.2 million images between May 2016 and June 2017. These images were classified by over 10,000 volunteers through an online citizen science platform. These data were combined with a 33-year phenology dataset on elephant-favoured fruiting tree species, and field measurements of elephant browsing preferences and damage. Our results showed a strong relationship between forest elephant density at the forest edge and fruit availability. When fruit availability was high, elephant density at the edge reached values nearly double the highest densities ever reported in any other part of the landscape (7.5 elephants km−2 in this study vs the previous highest estimate of 4 elephants km−2). The highest elephant densities occurred at the end of the dry season, but even outside of this high density period elephant density at the forest edge (2.4 elephants km−2) was more than double what other studies estimate for forest interiors with low human hunting pressure (1 elephant km−2). We found forest elephants to be selective browsers, but their browsing was non-destructive (in contrast to savanna elephants) and had little effect on tree size demography. Elephant paths acted as firebreaks during savanna burning, making them inadvertent protectors of the fire-sensitive forest and contributing to the stabilising feedbacks that allow forest and savanna to coexist in tropical landscapes

Phylogeny and Classification of the Trapdoor Spider Genus Myrmekiaphila: An Integrative Approach to Evaluating Taxonomic Hypotheses

Background: Revised by Bond and Platnick in 2007, the trapdoor spider genus Myrmekiaphila comprises 11 species. Species delimitation and placement within one of three species groups was based on modifications of the male copulatory device. Because a phylogeny of the group was not available these species groups might not represent monophyletic lineages; species definitions likewise were untested hypotheses. The purpose of this study is to reconstruct the phylogeny of Myrmekiaphila species using molecular data to formally test the delimitation of species and species-groups. We seek to refine a set of established systematic hypotheses by integrating across molecular and morphological data sets. Methods and Findings: Phylogenetic analyses comprising Bayesian searches were conducted for a mtDNA matrix composed of contiguous 12S rRNA, tRNA-val, and 16S rRNA genes and a nuclear DNA matrix comprising the glutamyl and prolyl tRNA synthetase gene each consisting of 1348 and 481 bp, respectively. Separate analyses of the mitochondrial and nuclear genome data and a concatenated data set yield M. torreya and M. millerae paraphyletic with respect to M. coreyi and M. howelli and polyphyletic fluviatilis and foliata species groups. Conclusions: Despite the perception that molecular data present a solution to a crisis in taxonomy, studies like this demonstrate the efficacy of an approach that considers data from multiple sources. A DNA barcoding approach during the species discovery process would fail to recognize at least two species (M. coreyi and M. howelli) whereas a combine

Emergence of Irrationality: Magnetization Plateaux in Modulated Hubbard Chains

Hubbard chains with periodically modulated coupling constants in a magnetic field exhibit gaps at zero temperature in their magnetic and charge excitations in a variety of situations. In addition to fully gapped situations (plateau in the magnetization curve and charge gap), we have shown [cond-mat/9908398] that plateaux also appear in the presence of massless modes, leading to a plateau with a magnetization m whose value depends continuously on the filling n. Here we detail and extend the arguments leading to such doping-dependent magnetization plateaux. First we analyze the low-lying excitations using Abelian bosonization. We compute the susceptibility and show that due to the constraint of fixed n, it vanishes at low temperatures (thus leading to a magnetization plateau) even in the presence of one massless mode. Next we study correlation functions and show that one component of the superconducting order parameter develops quasi-long-range order on a doping-dependent magnetization plateau. We then use perturbation theory in the on-site repulsion U to compute the width of these plateaux up to first order in U. Finally, we compute groundstate phase diagrams and correlation functions by Lanczos diagonalization of finite clusters, confirming the presence of doping-dependent plateaux and their special properties

The Antioxidant Moiety of MitoQ Imparts Minimal Metabolic Effects in Adipose Tissue of High Fat Fed Mice

Mitochondrial dysfunction is associated with a diverse array of diseases ranging from dystrophy and heart failure to obesity and hepatosteatosis. One of the major biochemical consequences of impaired mitochondrial function is an accumulation of mitochondrial superoxide, or reactive oxygen species (ROS). Excessive ROS can be detrimental to cellular health and is proposed to underpin many mitochondrial diseases. Accordingly, much research has been committed to understanding ways to therapeutically prevent and reduce ROS accumulation. In white adipose tissue (WAT), ROS is associated with obesity and its subsequent complications, and thus reducing mitochondrial ROS may represent a novel strategy for treating obesity related disorders. One therapeutic approach employed to reduce ROS abundance is the mitochondrial-targeted coenzyme Q (MitoQ), which enables mitochondrial specific delivery of a CoQ10 antioxidant via its triphenylphosphonium bromide (TPP+) cation. Indeed, MitoQ has been successfully shown to accumulate at the outer mitochondrial membrane and prevent ROS accumulation in several tissues in vivo; however, the specific effects of MitoQ on adipose tissue metabolism in vivo have not been studied. Here we demonstrate that mice fed high-fat diet with concomitant administration of MitoQ, exhibit minimal metabolic benefit in adipose tissue. We also demonstrate that both MitoQ and its control agent dTPP+ had significant and equivalent effects on whole-body metabolism, suggesting that the dTPP+ cation rather than the antioxidant moiety, was responsible for these changes. These findings have important implications for future studies using MitoQ and other TPP+ compounds

Combined constraints on modified Chaplygin gas model from cosmological observed data: Markov Chain Monte Carlo approach

We use the Markov Chain Monte Carlo method to investigate a global constraints on the modified Chaplygin gas (MCG) model as the unification of dark matter and dark energy from the latest observational data: the Union2 dataset of type supernovae Ia (SNIa), the observational Hubble data (OHD), the cluster X-ray gas mass fraction, the baryon acoustic oscillation (BAO), and the cosmic microwave background (CMB) data. In a flat universe, the constraint results for MCG model are, $\Omega_{b}h^{2}=0.02263^{+0.00184}_{-0.00162}$ ($1\sigma$) $^{+0.00213}_{-0.00195}$ $(2\sigma)$, $B_{s}=0.7788^{+0.0736}_{-0.0723}$ ($1\sigma$) $^{+0.0918}_{-0.0904}$ $(2\sigma)$, $\alpha=0.1079^{+0.3397}_{-0.2539}$ ($1\sigma$) $^{+0.4678}_{-0.2911}$ $(2\sigma)$, $B=0.00189^{+0.00583}_{-0.00756}$ ($1\sigma$) $^{+0.00660}_{-0.00915}$ $(2\sigma)$, and $H_{0}=70.711^{+4.188}_{-3.142}$ ($1\sigma$) $^{+5.281}_{-4.149}$ $(2\sigma)$.Comment: 12 pages, 1figur

Global gene expression analysis of human erythroid progenitors

This article is available open access through the publisher’s website. Copyright @ 2011 American Society of Hematology. This article has an erratum: http://bloodjournal.hematologylibrary.org/content/118/26/6993.3.Understanding the pattern of gene expression during erythropoiesis is crucial for a synthesis of erythroid developmental biology. Here, we isolated 4 distinct populations at successive erythropoietin-dependent stages of erythropoiesis, including the terminal, pyknotic stage. The transcriptome was determined using Affymetrix arrays. First, we demonstrated the importance of using defined cell populations to identify lineage and temporally specific patterns of gene expression. Cells sorted by surface expression profile not only express significantly fewer genes than unsorted cells but also demonstrate significantly greater differences in the expression levels of particular genes between stages than unsorted cells. Second, using standard software, we identified more than 1000 transcripts not previously observed to be differentially expressed during erythroid maturation, 13 of which are highly significantly terminally regulated, including RFXAP and SMARCA4. Third, using matched filtering, we identified 12 transcripts not previously reported to be continuously up-regulated in maturing human primary erythroblasts. Finally, using transcription factor binding site analysis, we identified potential transcription factors that may regulate gene expression during terminal erythropoiesis. Our stringent lists of differentially regulated and continuously expressed transcripts containing many genes with undiscovered functions in erythroblasts are a resource for future functional studies of erythropoiesis. Our Human Erythroid Maturation database is available at https://cellline.molbiol.ox.ac.uk/eryth/index.html.National Health Service Blood and Transplant, National Institute for Health Research Biomedical Research Center Program, and National Institute for Health Research

Constraints on accelerating universe using ESSENCE and Gold supernovae data combined with other cosmological probes

We use recently observed data: the 192 ESSENCE type Ia supernovae (SNe Ia), the 182 Gold SNe Ia, the 3-year WMAP, the SDSS baryon acoustic peak, the X-ray gas mass fraction in clusters and the observational $H(z)$ data to constrain models of the accelerating universe. Combining the 192 ESSENCE data with the observational $H(z)$ data to constrain a parameterized deceleration parameter, we obtain the best fit values of transition redshift and current deceleration parameter $z_{T}=0.632^{+0.256}_{-0.127}$, $q_{0}=-0.788^{+0.182}_{-0.182}$. Furthermore, using $\Lambda$CDM model and two model-independent equation of state of dark energy, we find that the combined constraint from the 192 ESSENCE data and other four cosmological observations gives smaller values of $\Omega_{0m}$ and $q_{0}$, but a larger value of $z_{T}$ than the combined constraint from the 182 Gold data with other four observations. Finally, according to the Akaike information criterion it is shown that the recently observed data equally supports three dark energy models: $\Lambda$CDM, $w_{de}(z)=w_{0}$ and $w_{de}(z)=w_{0}+w_{1}\ln(1+z)$.Comment: 18 pages, 8 figure