Distinct miRNAs associated with various clinical presentations of SARS-CoV-2 infection.

MicroRNAs (miRNAs) have been shown to play important roles in viral infections, but their associations with SARS-CoV-2 infection remain poorly understood. Here, we detected 85 differentially expressed miRNAs (DE-miRNAs) from 2,336 known and 361 novel miRNAs that were identified in 233 plasma samples from 61 healthy controls and 116 patients with COVID-19 using the high-throughput sequencing and computational analysis. These DE-miRNAs were associated with SASR-CoV-2 infection, disease severity, and viral persistence in the patients with COVID-19, respectively. Gene ontology and KEGG pathway analyses of the DE-miRNAs revealed their connections to viral infections, immune responses, and lung diseases. Finally, we established a machine learning model using the DE-miRNAs between various groups for classification of COVID-19 cases with different clinical presentations. Our findings may help understand the contribution of miRNAs to the pathogenesis of COVID-19 and identify potential biomarkers and molecular targets for diagnosis and treatment of SARS-CoV-2 infection

Design and Experiment of the Combined Machine for Transplanting Outcrop of Codonopsis with Micro Ridge Covered with Film

In response to the problem of no supporting equipment for the cultivation of Codonopsis in the hilly and mountainous areas of northwest China, a combined machine for transplanting outcrop of Codonopsis with micro ridges covered with film is designed. The key components of the prototype are analyzed and designed, and the structures and working parameters of the seedbed preparation device, seedling-casting device, rotary tillage soil-covering device, film-covering device, seedling head burial, and film edge soil-covering device are determined. The transmission system scheme is established, and the working mechanism of the core components is analyzed. Field experiments show that when the target seedling spacing is 4.4 cm and the machine moves forward at a speed of 0.1, 0.15, and 0.2 m/s, the variation coefficient of planting spacing and the qualification rate of planting depth meet the standard requirements. The qualified rate of planting posture and film side outcrop are greatly affected by the operating speed of the machine and decrease with the increase in operating speed. When the operating speed reaches 0.1 m/s, the average variation coefficient of planting spacing is 0.08% and the average qualified rate of planting depth, planting posture and film side outcrop is 95.83%, 94.17%, and 93.33%, respectively, which shows that the operating performance is better than that of the operating speeds of 0.15 m/s and 0.2 m/s. This study provides a new reference for the theoretical research and design of mechanized and automated transplanting machinery for Codonopsis seedlings

Host serine protease ACOT2 assists DENV proliferation by hydrolyzing viral polyproteins

ABSTRACTDengue fever is a mosquito-borne tropical disease caused by the dengue virus (DENV). The replication of DENV relies on the processing of its genome-encoded polyprotein by both viral protease NS3 (NS3pro) and host proteases. However, the impact of host proteases on DENV proliferation is not well understood. In this study, we utilized fluorophosphonate-based probes (FPs) to investigate the up-regulation of host serine proteases during DENV infection in detail. Among the identified proteases, acyl-CoA thioesterase 2 (ACOT2), an enzyme that hydrolyzes acyl-CoA molecules to generate fatty acids and free CoA, exhibited cleavage activity against DENV polypeptide substrates. Enzymatic assays and virological experiments confirmed that ACOT2 contributes to DENV propagation during the replication stage by cleaving the viral polyprotein. Docking models provided insights into the binding pocket of viral polypeptides and the catalytic mechanism of ACOT2. Notably, this study is the first to demonstrate that ACOT2 functions as a serine protease to hydrolyze protein substrates. These findings offer novel insights into DENV infection, host response, as well as the potential development of innovative antiviral strategies.IMPORTANCEDENV, one of the major pathogens of Dengue fever, remains a significant public health concern in tropical and subtropical regions worldwide. How DENV efficiently hijacks the host and accesses its life cycle with delicate interaction remains to be elucidated. Here, we deconvoluted that the host protease ACOT2 assists the DENV replication and characterized the ACOT2 as a serine protease involved in the hydrolysis of the DENV polypeptide substrate. Our results not only further the understanding of the DENV life cycle but also provide a possibility for the usage of activity-based proteomics to reveal host-virus interactions

The Trace Gas Monitoring Method Based on Diode Laser Wavelength-Modulation Spectroscopy Technology for the Detection of Clinical Blood Infection

It is important to monitor and evaluate the growth of microorganisms in order to accurately judge the situation of blood microbial infection. In this paper, diode laser wavelength modulation spectroscopy (DLWMS) technology is used to design a set of low-cost, high sensitivity, fast dynamic responses and a non-invasive trace gas measurement system, which can quickly and accurately assess the concentration of carbon dioxide (CO2) produced by blood microbial reproduction. The measurement principle and spectral processing algorithm of DLWMS are introduced first. The automatic and rapid detection of CO2 is realized through a self-designed optical system. By using the system to detect blood infection, the accuracy of the technology was verified. Therefore, it also indicates that DLWMS CO2 monitoring is a highly sensitive, fast-response and non-invasive technology, which can accurately and quickly determine blood infection and meet the clinical application requirements of human septicemia, bacteremia and other diseases

Identification of TCR repertoires in asymptomatic COVID-19 patients by single-cell T-cell receptor sequencing.

The T cell-mediated immune responses associated with asymptomatic infection (AS) of SARS-CoV-2 remain largely unknown. The diversity of T-cell receptor (TCR) repertoire is essential for generating effective immunity against viral infections in T cell response. Here, we performed the single-cell TCR sequencing of the PBMC samples from five AS subjects, 33 symptomatic COVID-19 patients and eleven healthy controls to investigate the size and the diversity of TCR repertoire. We subsequently analyzed the TCR repertoire diversity, the V and J gene segment deference, and the dominant combination of αβ VJ gene pairing among these three study groups. Notably, we revealed significant TCR preference in the AS group, including the skewed usage of TRAV1-2-J33-TRBV6-4-J2-2 and TRAV1-2-J33-TRBV6-1-J2-3. Our findings may shed new light on understanding the immunopathogenesis of COVID-19 and help identify optimal TCRs for development of novel therapeutic strategies against SARS-CoV-2 infection