Bilan des connaissances de la dynamique de l’érosion des côtes du Québec maritime laurentien

Un bilan des connaissances de la dynamique de l’érosion côtière dans l’estuaire et le golfe du Saint-Laurent montre que le recul du littoral dans les formations meubles est très important, variant généralement entre 0,5 et 2 m/an. Les données indiquent une accélération récente du phénomène, ce qui va dans le sens de la tendance mondiale appréhendée dans le contexte des changements climatiques. Il semble que les côtes à marais maritimes soient les plus sensibles, certains schorres supérieurs ayant déjà disparu au cours de la dernière décennie. Cela s’explique par le fait que, dans les régions froides, les marais maritimes sont affectés par un grand nombre de processus, dont le sapement par les vagues et les courants de marée, l’affouillement et l’arrachement par les glaces littorales, les processus cryogéniques, la dessiccation et les activités anthropiques et biologiques. Si l’action des vagues pendant les marées de vive eau et les tempêtes conditionne, dans une large mesure, le recul des falaises sableuses, les processus cryogéniques et hydrogéologiques sont les principaux responsables de la réactivation et de l’érosion des falaises à base argileuse et silteuse des complexes deltaïques. À l’échelle du Québec maritime, des études quantitatives saisonnières sont nécessaires pour bien comprendre la répartition spatio-temporelle des processus et surtout, les facteurs et les causes qui régissent l’érosion côtière dans les régions tempérées froides.A review of coastal erosion dynamics in the St. Lawrence maritime Estuary and Gulf demonstrates that shoreline retreat in unconsolidated formations varies between 0.5 and 2.0 m/yr. The data indicate a recent acceleration of coastal erosion that corresponds with the anticipated global trend resulting from climatic change. Saltmarshes are the most sensitive to coastal erosion, with some upper marshes having already disappeared in the last decade. In cold regions saltmarshes are affected by numerous processes such as undercutting by waves and tidal currents, ice foot scouring, freeze-thaw processes, wetting and drying processes, biologic processes and anthropogenic activities. Wave action during spring tides or storm surges is an important factor causing shoreline retreat in sandy cliffs, whereas cryogenic and hydrogeological processes are mainly responsible for reactivation and erosion of silt and clay-based cliffs in deltaic environments. In maritime Québec, quantitative seasonal studies are needed to develop a better understanding of spatio-temporal process distribution and to better assess the causes that regulate coastal erosion in mid-latitude cold regions

Is the energy status influencing dispersion in American glass eel?

International audienceThe American eel has a facultative catadromous life cycle. Spawning occurs in Sargasso Sea and growth occurs into freshwater or saltwater habitats over a wide geographical range. The selection of suitable habitat for growth begins at the glass eel stage. Based on the hypothesis of conditional dispersion strategy, energetic status would determine whether glass eels would express freshwater or saltwater preference. Glass eels were captured from two rivers from Nova Scotia and two rivers from Québec in 2011 and 2012. Following salinity preference experiments, glass eels were classified as “inactive” or as “active with preference for fresh water” and “active with preference for salt water”. They were anaesthetized in MS 222, weighed, measured and frozen in carbonic ice. Results indicate that glass eels expressing preference for freshwater had the highest condition factor. Total content of glycogen and lipids were measured in order to test whether or not the three groups of glass eels could be differentiated based on their energy status whatever the river and the year of fishing and results will be presented

La terrasse Mitis à la pointe de Mille-Vaches (péninsule de Portneuf), rive nord de l’estuaire maritime du Saint-Laurent : nature des dépôts et évolution du niveau marin relatif à l’holocène

La basse terrasse à l’extrémité sud-ouest de la péninsule de Portneuf, sur la Haute Côte-Nord du Saint-Laurent, correspond à la terrasse Mitis présente dans quelques autres localités de la rive nord de l’estuaire. Entièrement composée de matériaux meubles détritiques, elle comprend plusieurs unités, la plupart sableuses, d’une épaisseur supérieure à 3 m. Mises en place en milieu littoral et intertidal, ces unités reposent sur un dépôt de sable fin gris, infratidal, lui-même susjacent au substrat limono-argileux déposé dans la Mer de Goldthwait, il y a >9,5 ka. Un dépôt de limon sableux, gris, laminé, contenant des débris de plantes en place correspondant à un faciès de schorre inférieur, coiffe la séquence sableuse. Par endroits, ce dépôt est lui-même recouvert d’une couche de tourbe de 25‑30 cm d’épaisseur. L’unité à la base de la falaise active a été mise en place entre 1990 ± 60 et 2740 ± 70 BP. Les unités sableuses au-dessus datent de 1570 ± 60 à 1880 ± 90 BP, alors que l’unité limoneuse à faciès de schorre inférieur a donné un âge au 14C allant de 1570 ± 50 à 1970 ± 70 BP. L’âge médian de la terrasse Mitis est de 1880 ± 90 BP, alors que si on prend en compte uniquement les dates pour l’unité limoneuse à faciès de schorre inférieur, il est de 1830 ± 60 BP. L’édification de la terrasse Mitis à la pointe de Mille-Vaches est donc contemporaine de la plupart des sites des deux rives de l’estuaire. Le substrat argileux de la vaste batture en face de la terrasse, qui se prolonge sous celle-ci, a été érodé lors d’un bas niveau marin pendant l’Holocène moyen qui fut suivi d’une remontée du niveau de quelques mètres. Un glissement de terrain historique, survenu vraisemblablement lors du séisme de 1663, caractérise la partie supérieure de l’estran en face de la falaise active.The low terrace at the SW extremity of the Portneuf Peninsula, on the north shore of the Lower St. Lawrence estuary, is an equivalent of the Mitis terrace occurring at a few other localities. The terrace is entirely made of detritic sediments. The various units, mostly fine to coarse sand deposited in the shore zone, are over 3 m in thickness. These sediments appear to unconformably overlie a subtidal dark grey fine sand resting on a surface eroded into a Goldthwait Sea clay deposit older than 9.5 ka. At the surface of the terrace, there is a grey, laminated sandy silt deposit with plant remains in situ (a lower marsh facies), locally covered by a thin (25‑30 cm) layer of peat. The sand unit at the base of the studied exposure has been dated 1990 ± 60 to 2740 ± 70 BP. The overlying sandy units are dated 1570 ± 60 to 1880 ± 90 BP, whereas the silt unit at the surface is dated 1570 ± 50 to 1970 ± 70 BP. The median age of the terrace is 1880 ± 90 BP, whereas if we use only the 14C dates for the silt unit, it is 1830 ± 60 BP. At Pointe de Mille-Vaches, the Mitis terrace is thus contemporaneous with most localities on both shores of the estuary. The substrate of the wide tidal flat in front of the Mitis terrace (an erosion surface underlying the terrace) was cut into the marine clay during a mid-Holocene lowstand, which was followed by a rising sea level of a few meters. An historical landslide, which possibly occurred during the 1663 seismic event, characterizes the upper part of the tidal zone in front of the active cliff

Sex-Specific Co-expression Networks and Sex-Biased Gene Expression in the Salmonid Brook Charr <i>Salvelinus fontinalis</i>.

Networks of co-expressed genes produce complex phenotypes associated with functional novelty. Sex differences in gene expression levels or in the structure of gene co-expression networks can cause sexual dimorphism and may resolve sexually antagonistic selection. Here we used RNA-sequencing in the salmonid Brook Charr Salvelinus fontinalis to characterize sex-specific co-expression networks in the liver of 47 female and 53 male offspring. In both networks, modules were characterized for functional enrichment, hub gene identification, and associations with 15 growth, reproduction, and stress-related phenotypes. Modules were then evaluated for preservation in the opposite sex, and in the congener Arctic Charr Salvelinus alpinus Overall, more transcripts were assigned to a module in the female network than in the male network, which coincided with higher inter-individual gene expression and phenotype variation in the females. Most modules were preserved between sexes and species, including those involved in conserved cellular processes (e.g., translation, immune pathways). However, two sex-specific male modules were identified, and these may contribute to sexual dimorphism. To compare with the network analysis, differentially expressed transcripts were identified between the sexes, revealing a total of 16% of expressed transcripts as sex-biased. For both sexes, there was no overrepresentation of sex-biased genes or sex-specific modules on the putative sex chromosome. Sex-biased transcripts were also not overrepresented in sex-specific modules, and in fact highly male-biased transcripts were enriched in preserved modules. Comparative network analysis and differential expression analyses identified different aspects of sex differences in gene expression, and both provided new insights on the genes underlying sexual dimorphism in the salmonid Brook Charr

Multidisciplinary population monitoring when demographic data are sparse: a case study of remote trout populations

The potential of genetic, genomic, and phenotypic metrics for monitoring population trends may be especially high in isolated regions, where traditional demographic monitoring is logistically difficult and only sporadic sampling is possible. This potential, however, is relatively underexplored empirically. Over eleven years, we assessed several such metrics along with traditional ecological knowledge and catch data in a socioeconomically important trout species occupying a large, remote lake. The data revealed largely stable characteristics in two populations over 2–3 generations, but possible contemporary changes in a third population. These potential shifts were suggested by reduced catch rates, reduced body size, and changes in selection implied at one gene-associated single nucleotide polymorphism. A demographic decline in this population, however, was ambiguously supported, based on the apparent lack of temporal change in effective population size, and corresponding traditional knowledge suggesting little change in catch. We illustrate how the pluralistic approach employed has practicality for setting future monitoring efforts of these populations, by guiding monitoring priorities according to the relative merits of different metrics and availability of resources. Our study also considers some advantages and disadvantages to adopting a pluralistic approach to population monitoring where demographic data are not easily obtained

Environmental DNA metabarcoding:Transforming how we survey animal and plant communities

The genomic revolution has fundamentally changed how we survey biodiversity on earth. High-throughput sequencing (?HTS?) platforms now enable the rapid sequencing of DNA from diverse kinds of environmental samples (termed ?environmental DNA? or ?eDNA?). Coupling HTS with our ability to associate sequences from eDNA with a taxonomic name is called ?eDNA metabarcoding? and offers a powerful molecular tool capable of noninvasively surveying species richness from many ecosystems. Here, we review the use of eDNA metabarcoding for surveying animal and plant richness, and the challenges in using eDNA approaches to estimate relative abundance. We highlight eDNA applications in freshwater, marine and terrestrial environments, and in this broad context, we distill what is known about the ability of different eDNA sample types to approximate richness in space and across time. We provide guiding questions for study design and discuss the eDNA metabarcoding workflow with a focus on primers and library preparation methods. We additionally discuss important criteria for consideration of bioinformatic filtering of data sets, with recommendations for increasing transparency. Finally, looking to the future, we discuss emerging applications of eDNA metabarcoding in ecology, conservation, invasion biology, biomonitoring, and how eDNA metabarcoding can empower citizen science and biodiversity educationpublishersversionPeer reviewe

Evidence for directional selection at a novel major histocompatibility class I marker in wild common frogs (Rana temporaria) exposed to a viral pathogen (Ranavirus).

(c) 2009 Teacher et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.Whilst the Major Histocompatibility Complex (MHC) is well characterized in the anuran Xenopus, this region has not previously been studied in another popular model species, the common frog (Rana temporaria). Nor, to date, have there been any studies of MHC in wild amphibian host-pathogen systems. We characterise an MHC class I locus in the common frog, and present primers to amplify both the whole region, and specifically the antigen binding region. As no more than two expressed haplotypes were found in over 400 clones from 66 individuals, it is likely that there is a single class I locus in this species. This finding is consistent with the single class I locus in Xenopus, but contrasts with the multiple loci identified in axolotls, providing evidence that the diversification of MHC class I into multiple loci likely occurred after the Caudata/Anura divergence (approximately 350 million years ago) but before the Ranidae/Pipidae divergence (approximately 230 mya). We use this locus to compare wild populations of common frogs that have been infected with a viral pathogen (Ranavirus) with those that have no history of infection. We demonstrate that certain MHC supertypes are associated with infection status (even after accounting for shared ancestry), and that the diseased populations have more similar supertype frequencies (lower F(ST)) than the uninfected. These patterns were not seen in a suite of putatively neutral microsatellite loci. We interpret this pattern at the MHC locus to indicate that the disease has imposed selection for particular haplotypes, and hence that common frogs may be adapting to the presence of Ranavirus, which currently kills tens of thousands of amphibians in the UK each year

Multidisciplinary population monitoring when demographic data are sparse: a case study of remote trout populations

Abstract The potential of genetic, genomic, and phenotypic metrics for monitoring population trends may be especially high in isolated regions, where traditional demographic monitoring is logistically difficult and only sporadic sampling is possible. This potential, however, is relatively underexplored empirically. Over eleven years, we assessed several such metrics along with traditional ecological knowledge and catch data in a socioeconomically important trout species occupying a large, remote lake. The data revealed largely stable characteristics in two populations over 2-3 generations, but possible contemporary changes in a third population. These potential shifts were suggested by reduced catch rates, reduced body size, and changes in selection implied at one gene-associated single nucleotide polymorphism. A demographic decline in this population, however, was ambiguously supported, based on the apparent lack of temporal change in effective population size, and corresponding traditional knowledge suggesting little change in catch. We illustrate how the pluralistic approach employed has practicality for setting future monitoring efforts of these populations, by guiding monitoring priorities according to the relative merits of different metrics and availability of resources. Our study also considers some advantages and disadvantages to adopting a pluralistic approach to population monitoring where demographic data are not easily obtained

Solution structure of the inner DysF domain of myoferlin and implications for limb girdle muscular dystrophy type 2b

Mutations in the protein dysferlin, a member of the ferlin family, lead to limb girdle muscular dystrophy type 2B and Myoshi myopathy. The ferlins are large proteins characterised by multiple C2 domains and a single C-terminal membrane-spanning helix. However, there is sequence conservation in some of the ferlin family in regions outside the C2 domains. In one annotation of the domain structure of these proteins, an unusual internal duplication event has been noted where a putative domain is inserted in between the N- and C-terminal parts of a homologous domain. This domain is known as the DysF domain. Here, we present the solution structure of the inner DysF domain of the dysferlin paralogue myoferlin, which has a unique fold held together by stacking of arginine and tryptophans, mutations that lead to clinical disease in dysferlin

Ecological speciation in European whitefish is driven by a large-gaped predator

Lake-dwelling fish that form species pairs/flocks characterized by body size divergence are important model systems for speciation research. Although several sources of divergent selection have been identified in these systems, their importance for driving the speciation process remains elusive. A major problem is that in retrospect, we cannot distinguish selection pressures that initiated divergence from those acting later in the process. To address this issue, we studied the initial stages of speciation in European whitefish (Coregonus lavaretus) using data from 358 populations of varying age (26-10,000 years). We find that whitefish speciation is driven by a large-growing predator, the northern pike (Esox lucius). Pike initiates divergence by causing a largely plastic differentiation into benthic giants and pelagic dwarfs: ecotypes that will subsequently develop partial reproductive isolation and heritable differences in gill raker number. Using an eco-evolutionary model, we demonstrate how pike's habitat specificity and large gape size are critical for imposing a between-habitat trade-off, causing prey to mature in a safer place or at a safer size. Thereby, we propose a novel mechanism for how predators may cause dwarf/giant speciation in lake-dwelling fish species.Peer reviewe