Application of cover-free codes and combinatorial designs to two-stage testing

AbstractWe study combinatorial and probabilistic properties of cover-free codes and block designs which are useful for their efficient application as the first stage of two-stage group testing procedures. Particular attention is paid to these procedures because of their importance in such applications as monoclonal antibody generation and cDNA library screening

Galactic Cosmic Rays - Clouds Effect and Bifurcation Model of the Earth Global Climate. Part 2. Comparison of Theory with Experiment

The solution of energy-balance model of the Earth global climate and the EPICA Dome C and Vostok experimental data of the Earth surface palaeotemperature evolution over past 420 and 740 kyr are compared. In the framework of proposed bifurcation model (i) the possible sharp warmings of the Dansgaard-Oeschger type during the last glacial period due to stochastic resonance is theoretically argued; (ii) the concept of climatic sensitivity of water in the atmosphere, whose temperature instability has the form of so-called hysteresis loop, is proposed, and based of this concept the time series of global ice volume over the past 1000 kyr, which is in good agreement with the time series of delta O-18 concentration in the sea sediments, is obtained; (iii) the so-called "CO2 doubling" problem is discussedComment: 19 pages, 4 figure

Mixing Quantum and Classical Mechanics

Using a group theoretical approach we derive an equation of motion for a mixed quantum-classical system. The quantum-classical bracket entering the equation preserves the Lie algebra structure of quantum and classical mechanics: The bracket is antisymmetric and satisfies the Jacobi identity, and, therefore, leads to a natural description of interaction between quantum and classical degrees of freedom. We apply the formalism to coupled quantum and classical oscillators and show how various approximations, such as the mean-field and the multiconfiguration mean-field approaches, can be obtained from the quantum-classical equation of motion.Comment: 31 pages, LaTeX2

A preliminary quantitative mineral resource assessment of undiscovered porphyry copper resources in the Andes mountains of South America

Quantitative information on the probable locations and amounts of undiscovered porphyry copper resources of the world is important to international exploration managers, land-use and environmental planners, economists, and policy makers. The U.S. Geological Survey is organizing and facilitating a cooperative assessment, in collaboration with interested geological surveys and geological organizations, of the likely global distribution, quantity, and quality of selected undiscovered nonfuel mineral resources. This report on undiscovered porphyry copper deposits of the Andes Mountains was produced jointly with the geological surveys of Argentina, Chile, Colombia, and Peru, and is a summary of the more extensive report (>300 pages) that will be published soon. Reports on undiscovered copper resources of other regions of the world are being prepared and will be followed by assessments of the global undiscovered resources of platinum-group minerals and potash

Space-Time Diffusion of Ground and Its Fractal Nature

We present evidences of the diffusive motion of the ground and tunnels and show that if systematic movements are excluded then the remaining uncorrelated component of the motion obeys a characteristic fractal law with the displacement variance dY^2 scaling with time- and spatial intervals T and L as dY^2 \propto T^(Alpha)L^(Gamma) with both exponents close to 1. We briefly describe experimental methods of the mesa- and microscopic ground motion detection used in the measurements at the physics research facilities sensitive to the motion, particularly, large high energy elementary particle accelerators. A simple mathematical model of the fractal motion demonstrating the observed scaling law is also presented and discussed.Comment: 83 pages, 46 fig

Investigation of the heavy nuclei fission with anomalously high values of the fission fragments total kinetic energy

Binary fission of 232Th and 238U induced by fast neutrons were under intent investigation in the IPPE during recent years. These measurements were performed with a twin ionization chamber with Frisch grids. Signals from the detector were digitized for further processing with a specially developed software. It results in information of kinetic energies, masses, directions and Bragg curves of registered fission fragments. Total statistics of a few million fission events were collected during each experiment. It was discovered that for several combinations of fission fragment masses their total kinetic energy was very close to total free energy of the fissioning system. The probability of such fission events for the fast neutron induced fission was found to be much higher than for spontaneous fission of 252Cf and thermal neutron induced fission of 235U. For experiments with 238U target the energy of incident neutrons were 5 MeV and 6.5 MeV. Close analysis of dependence of fission fragment distribution on compound nucleus excitation energy gave us some explanation of the phenomenon. It could be a process in highly excited compound nucleus which leads the fissioning system from the scission point into the fusion valley with high probability

Pan-American quantitative mineral resource assessment of copper, molybdenum, gold, and silver in undiscovered porphyry copper deposits in the Andes mountains, South America

Working together, the geological surveys of Argentina, Chile, Colombia, Peru, and the United States used the U. S. Geological Survey three-part mineral resource assessment methodology (Singer, 1993) to delineate the regional locations and make probabilistic estimates of the amounts of copper, molybdenum, silver, and gold in undiscovered porphyry copper deposits in the Andes. Quantitative information on the probable locations and amounts of undiscovered mineral resources of the world is important to exploration managers, land-use and environmental planners, economists, and policy makers

Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas

Although theMYConcogene has been implicated incancer, a systematic assessment of alterations ofMYC, related transcription factors, and co-regulatoryproteins, forming the proximal MYC network (PMN),across human cancers is lacking. Using computa-tional approaches, we define genomic and proteo-mic features associated with MYC and the PMNacross the 33 cancers of The Cancer Genome Atlas.Pan-cancer, 28% of all samples had at least one ofthe MYC paralogs amplified. In contrast, the MYCantagonists MGA and MNT were the most frequentlymutated or deleted members, proposing a roleas tumor suppressors.MYCalterations were mutu-ally exclusive withPIK3CA,PTEN,APC,orBRAFalterations, suggesting that MYC is a distinct onco-genic driver. Expression analysis revealed MYC-associated pathways in tumor subtypes, such asimmune response and growth factor signaling; chro-matin, translation, and DNA replication/repair wereconserved pan-cancer. This analysis reveals insightsinto MYC biology and is a reference for biomarkersand therapeutics for cancers with alterations ofMYC or the PMN

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

This integrated, multiplatform PanCancer Atlas study co-mapped and identified distinguishing molecular features of squamous cell carcinomas (SCCs) from five sites associated with smokin

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

Long noncoding RNAs (lncRNAs) are commonly dys-regulated in tumors, but only a handful are known toplay pathophysiological roles in cancer. We inferredlncRNAs that dysregulate cancer pathways, onco-genes, and tumor suppressors (cancer genes) bymodeling their effects on the activity of transcriptionfactors, RNA-binding proteins, and microRNAs in5,185 TCGA tumors and 1,019 ENCODE assays.Our predictions included hundreds of candidateonco- and tumor-suppressor lncRNAs (cancerlncRNAs) whose somatic alterations account for thedysregulation of dozens of cancer genes and path-ways in each of 14 tumor contexts. To demonstrateproof of concept, we showed that perturbations tar-geting OIP5-AS1 (an inferred tumor suppressor) andTUG1 and WT1-AS (inferred onco-lncRNAs) dysre-gulated cancer genes and altered proliferation ofbreast and gynecologic cancer cells. Our analysis in-dicates that, although most lncRNAs are dysregu-lated in a tumor-specific manner, some, includingOIP5-AS1, TUG1, NEAT1, MEG3, and TSIX, synergis-tically dysregulate cancer pathways in multiple tumorcontexts