Transitional disks and their origins: an infrared spectroscopic survey of Orion A

Transitional disks are protoplanetary disks around young stars, with inner holes or gaps which are surrounded by optically thick outer, and often inner, disks. Here we present observations of 62 new transitional disks in the Orion A star-forming region. These were identified using the \textit{Spitzer Space Telescope}'s Infrared Spectrograph and followed up with determinations of stellar and accretion parameters using the Infrared Telescope Facility's SpeX. We combine these new observations with our previous results on transitional disks in Taurus, Chamaeleon I, Ophiuchus and Perseus, and with archival X-ray observations. This produces a sample of 105 transitional disks of "cluster" age 3 Myr or less, by far the largest hitherto assembled. We use this sample to search for trends between the radial structure in the disks and many other system properties, in order to place constraints on the possible origins of transitional disks. We see a clear progression of host star accretion rate and the different disk morphologies. We confirm that transitional disks with complete central clearings have median accretion rates an order of magnitude smaller than radially continuous disks of the same population. Pre-transitional disks --- those objects with gaps that separate inner and outer disks --- have median accretion rates intermediate between the two. Our results from the search for statistically significant trends, especially related to $\dot{M}$, strongly support that in both cases the gaps are far more likely to be due to the gravitational influence of Jovian planets or brown dwarfs orbiting within the gaps, than to any of the photoevaporative, turbulent or grain-growth processes that can lead to disk dissipation. We also find that the fraction of Class II YSOs which are transitional disks is large, 0.1-0.2, especially in the youngest associations.Comment: 96 pages, 25 figures, resubmitted to Ap

Quantification of global mitochondrial DNA methylation levels and inverse correlation with age at two CpG sites

Mammalian ageing features biological attrition evident at cellular, genetic and epigenetic levels. Mutation of mitochondrial DNA, and nuclear DNA methylation changes are well established correlates of ageing. The methylation of mitochondrial DNA (mtDNA) is a new and incompletely described phenomenon with unknown biological control and significance. Here we describe the bisulphite sequencing of mtDNA from 82 individuals aged 18-91 years. We detected low and variable levels of mtDNA methylation at 54 of 133 CpG sites interrogated. Regression analysis of methylation levels at two CpG sites (M1215 and M1313) located within the 12S ribosomal RNA gene showed an inverse correlation with subject age suggesting their utility as epigenetic markers of ageing

The EpiTect Methyl qPCR Assay as novel age estimation method in forensic biology

Human aging is associated with epigenetic modification of the genome. DNA methylation at cytosines appears currently as the best characterised modification that occurs during the mammalian lifetime. Such methylation changes at regulatory region can provide insights to track contributor age for criminal investigation. The EpiTect Methyl II PCR system (QIAGEN) was used to compare methylation levels of CpG islands in the promoter regions of a number of age related genes, of which four successfully showed changes across the lifespan (NPTX2, KCNQ1DN, GRIA2 and TRIM58). This technique is based on the detection of remaining input genome after digestion with a methylation-sensitive restriction enzyme. This study examined DNA specimens from 80 female subjects of various ages (18-91 years) obtained from blood, using primers designed to flank the studied gene loci. The data obtained from DNA methylation quantification showed successful discrimination among volunteered ages. Overall, the difference between predicted and real age was about 11 years and absolute mean differences (AMD) was only 7.2 years error. We suggest the EpiTect system can be used as fast and simple innovative tool in future forensic age estimation

W49A: A starburst triggered by expanding shells

W49A is a giant molecular cloud which harbors some of the most luminous embedded clusters in the Galaxy. However, the explanation for this starburst-like phenomenon is still under debate. Methods. We investigated large-scale Spitzer mid-infrared images together with a Galatic Ring Survey 13CO J = 1-0 image, complemented with higher resolution (~ 11 arcsec) 13CO J = 2-1 and C18O J = 2-1 images over a ~ 15 x 13 pc^2 field obtained with the IRAM 30m telescope. Two expanding shells have been identified in the mid-infrared images, and confirmed in the position-velocity diagrams made from the 13CO J = 2-1 and C18O J = 2-1 data. The mass of the averaged expanding shell, which has an inner radius of ~ 3.3 pc and a thickness of ~ 0.41 pc, is about 1.9 x 10^4 M*. The total kinetic energy of the expanding shells is estimated to be ~ 10^49 erg which is probably provided by a few massive stars, whose radiation pressure and/or strong stellar winds drive the shells. The expanding shells are likely to have a common origin close to the two ultracompact Hii regions (source O and source N), and their expansion speed is estimated to be ~ 5 km/s, resulting in an age of ~ 3-7 x 10^5 years. In addition, on larger (~ 35 x 50 pc^2) scales, remnants of two gas ejections have been identified in the 13CO J = 1 - 0 data. Both ejections seem to have the same center as the expanding shells with a total energy of a few times 10^50 erg. The main driving mechanism for the gas ejections is unclear, but likely related to the mechanism which triggers the starburst in W49A

Longitudinal and quantitative MRI in AD

Quantitative MRI provides important information about tissue properties in brain both in normal ageing and in degenerative disorders. Although it is well known that those with Alzheimer's disease (AD) show a specific pattern and faster rate of atrophy than controls, the precise spatial and temporal patterns of quantitative MRI in AD are unknown. We aimed to investigate neuroimaging correlates of AD using serial quantitative MRI. In our study, twenty-one subjects with AD and thirty-two similar-aged healthy controls underwent two serial MRI scans at baseline and 12 months. Tissue characteristics were captured using two quantitative MRI parameters: longitudinal relaxation time (qT1) and transverse relaxation time (qT2). The two groups (AD and controls) were statistically compared using a voxel based quantification (VBQ) method based on Matlab and SPM8. At baseline, subjects with AD showed a significant reduction of qT1 and qT2 compared to controls in bilateral temporal and parietal lobes, hippocampus, and basal ganglia. This pattern was also observed at follow-up. Longitudinally, in AD we found a significant increase rather than further reduction of qT1 and qT2 from the baseline in bilateral hippocampus, thalamus and right caudate nucleus. In addition, the longitudinal change of qT1 in left hippocampus was negatively correlated with cognitive decline in AD over the 1-year period, and the general disease severity significantly predicted the amount of increase of qT1 in bilateral hippocampus over 12 months. The longitudinal change of qT2 in left parahippocampus correlated with change in neuropsychiatric features over time. In summary, quantitative MRI parameters were reduced in AD cross-sectionally, but increased over time, showing distinct spatiotemporal patterns from the atrophy in AD. We also showed the clinical relevance of quantitative MRI parameters, indicating their potential promise as new imaging markers in AD.The study was funded by the Sir Jules Thorn Charitable Trust (grant ref: 05/JTA) and was supported by the National Institute for Health Research (NIHR) Newcastle Biomedical Research Centre and the Biomedical Research Unit in Lewy Body Dementia based at Newcastle upon Tyne Hospitals National Health Service (NHS) Foundation Trust and Newcastle University and the NIHR Biomedical Research Centre and Biomedical Research Unit in Dementia based at Cambridge University Hospitals NHS Foundation Trust and the University of Cambridge. The views expressed are those of the authors and not necessarily those of the NHS, the NIHR or the Department of Health. L. Su, A. Blamire, R. Watson, J. He and B. Aribisala report no disclosures. J. O’Brien has been a consultant for GE Healthcare, Servier, and Bayer Healthcare and has received honoraria for talks from Pfizer, GE Healthcare, Eisai, Shire, Lundbeck, Lilly, and Novartis.This is the author accepted manuscript. The final version is available from Bentham Science via http://dx.doi.org/10.2174/156720501366615111614141

The radio and IR counterparts of the ring nebula around HD211564

We report the detection of the radio and infrared counterparts of the ring nebula around the WN3(h) star HD211564 (WR152), located to the southwest of the HII region Sh2132. Using radio continuum data from the Canadian Galactic Plane Survey, we identified the radio counterparts of the two concentric rings, of about 9' and 16' in radius, related to the star. After applying a filling factor f = 0.05-0.12, electron densities and ionized masses are in the range 10-16 cm^-3 and 450-700 Mo, respectively. The analysis of the HI gas emission distribution allowed the identification of 5900 Mo of neutral atomic gas with velocities between -52 and -43 km/s probably linked to the nebula. The region of the nebula is almost free of molecular gas. Only four small clumps were detected, with a total molecular mass of 790 Mo. About 310 Mo are related to a small infrared shell-like source linked to the inner ring, which is also detected in the MSX band A. An IRAS YSO candidate is detected in coincidence with the shell-like IR source. We suggest that the optical nebula and its neutral counterparts originated from the stellar winds from the WR star and its massive progenitor, and are evolving in the envelope of a slowly expanding shell centered at (l,b) = (102 30, -0 50), of about 31 pc in radius. The bubble's energy conversion efficiency is in agreement with recent numerical analysis and with observational results.Comment: 11 pages, 7 figures, accepted in MNRA