891 research outputs found

    Use of continuous simulation model (COSIMAT) as a complementary tool to model sewer systems: a case study on the Paruck collector, Brussels, Belgium

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    Episodic Combined Sewer Overflow (CSO) discharges effectively control the ecological status of receiving water bodies. Hydrodynamic models like the Storm Water Management Model (SWMM) are often used to model the CSO events. However, such detailed models are computationally demanding especially when a long‐term simulation of a complex system is required. Considering this, we developed an alternative simple continuous simulation model (COSIMAT) using the SIMULINKℱ module in MATLABℱ as a means of solving the issue of computational time associated with the detailed models. The COSIMAT model was tested against a detailed model set up on the SWMM. The Paruck collector – one of the major Collector of the Brussels’ sewer system was used as an example case. Results showed that the accuracy of the simplified COSIMAT model was comparable to that of the detailed hydrodynamic model (SWMM) with a significant reduction of computational time by a factor of 8. We believe such alternative approaches would be useful to replace a computationally demanding model component of an integrated modelling system of a complex sewer system

    The Mid-Infrared Instrument for the James Webb Space Telescope, III: MIRIM, The MIRI Imager

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    In this article, we describe the MIRI Imager module (MIRIM), which provides broad-band imaging in the 5 - 27 microns wavelength range for the James Webb Space Telescope. The imager has a 0"11 pixel scale and a total unobstructed view of 74"x113". The remainder of its nominal 113"x113" field is occupied by the coronagraphs and the low resolution spectrometer. We present the instrument optical and mechanical design. We show that the test data, as measured during the test campaigns undertaken at CEA-Saclay, at the Rutherford Appleton Laboratory, and at the NASA Goddard Space Flight Center, indicate that the instrument complies with its design requirements and goals. We also discuss the operational requirements (multiple dithers and exposures) needed for optimal scientific utilization of the MIRIM.Comment: 29 pages, 9 figure

    Mapping the cis-regulatory architecture of the human retina reveals noncoding genetic variation in disease

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    The interplay of transcription factors and cis-regulatory elements (CREs) orchestrates the dynamic and diverse genetic programs that assemble the human central nervous system (CNS) during development and maintain its function throughout life. Genetic variation within CREs plays a central role in phenotypic variation in complex traits including the risk of developing disease. We took advantage of the retina, a well-characterized region of the CNS known to be affected by pathogenic variants in CREs, to establish a roadmap for characterizing regulatory variation in the human CNS. This comprehensive analysis of tissue-specific regulatory elements, transcription factor binding, and gene expression programs in three regions of the human visual system (retina, macula, and retinal pigment epithelium/choroid) reveals features of regulatory element evolution that shape tissue-specific gene expression programs and defines regulatory elements with the potential to contribute to Mendelian and complex disorders of human vision

    Accelerating Bayesian hierarchical clustering of time series data with a randomised algorithm

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    We live in an era of abundant data. This has necessitated the development of new and innovative statistical algorithms to get the most from experimental data. For example, faster algorithms make practical the analysis of larger genomic data sets, allowing us to extend the utility of cutting-edge statistical methods. We present a randomised algorithm that accelerates the clustering of time series data using the Bayesian Hierarchical Clustering (BHC) statistical method. BHC is a general method for clustering any discretely sampled time series data. In this paper we focus on a particular application to microarray gene expression data. We define and analyse the randomised algorithm, before presenting results on both synthetic and real biological data sets. We show that the randomised algorithm leads to substantial gains in speed with minimal loss in clustering quality. The randomised time series BHC algorithm is available as part of the R package BHC, which is available for download from Bioconductor (version 2.10 and above) via http://bioconductor.org/packages/2.10/bioc/html/BHC.html. We have also made available a set of R scripts which can be used to reproduce the analyses carried out in this paper. These are available from the following URL. https://sites.google.com/site/randomisedbhc/

    Structure of the outer layers of cool standard stars

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    Context: Among late-type red giants, an interesting change occurs in the structure of the outer atmospheric layers as one moves to later spectral types in the Hertzsprung-Russell diagram: a chromosphere is always present, but the coronal emission diminishes and a cool massive wind steps in. Aims: Where most studies have focussed on short-wavelength observations, this article explores the influence of the chromosphere and the wind on long-wavelength photometric measurements. Methods: The observational spectral energy distributions are compared with the theoretical predictions of the MARCS atmosphere models for a sample of 9 K- and M-giants. The discrepancies found are explained using basic models for flux emission originating from a chromosphere or an ionized wind. Results: For 7 out of 9 sample stars, a clear flux excess is detected at (sub)millimeter and/or centimeter wavelengths. The precise start of the excess depends upon the star under consideration. The flux at wavelengths shorter than about 1 mm is most likely dominated by an optically thick chromosphere, where an optically thick ionized wind is the main flux contributor at longer wavelengths. Conclusions: Although the optical to mid-infrared spectrum of the studied K- and M-giants is well represented by a radiative equilibrium atmospheric model, the presence of a chromosphere and/or ionized stellar wind at higher altitudes dominates the spectrum in the (sub)millimeter and centimeter wavelength ranges. The presence of a flux excess also has implications on the role of these stars as fiducial spectrophotometric calibrators in the (sub)millimeter and centimeter wavelength range.Comment: 13 pages, 6 figures, 7 pages of online material, submitted to A&
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