A Dangerous Mix: From Natural Variation to Genetic Incompatibilities in Arabidopsis thaliana and Arabidopsis arenosa

Plants and pathogens have co-evolved for millennia. As part of this long-term interaction, both the preservation of long-standing genetic variation, as well as the generation of novel genetic material is required from both the plant and the pathogen side to remain competitive when facing each other. As a consequence, some members of the plant immune system are highly diversified. Such is the case for plant NLRs, which act as intracellular receptors that recognize incoming pathogen effectors, thereby initiating a signalling cascade and ultimately resulting in cell death. The extensive variability of NLRs enables the recognition of a wide spectrum of pathogen effectors. However, sometimes this variability can backfire: When two divergent elements of the plant immune system, often two NLRs, or one NLR and another immune system component, meet in a hybrid plant – the progeny of a cross between two different accessions – they can trigger an immune response in the absence of a pathogen. This phenomenon is called hybrid incompatibility. Here, I study two sets of hybrid incompatibility cases in Arabidopsis thaliana and a case of inbreeding depression in its outcrossing relative Arabidopsis arenosa. In the first project, I study a set of A. thaliana incompatibility cases which are are the result of incompatible interactions between the NLR cluster RPP7, which confers strain-specific resistance to downy mildew, and RPW8, an atypical non-NLR resistance (R) gene cluster that confers broad-spectrum resistance to filamentous pathogens. I describe three independent cases where allele-specific interactions between these two loci result in incompatible hybrids. In addition, for two of these cases, I identify the causal genes for incompatibility from the RPW8 side: RPW8.1 and HR4. The resulting proteins of these two causal genes for incompatibility show length polymorphisms across different accessions which are characterized by 21- or 14- amino acid repeat number variations in their C terminal. I show that these C terminal repeats largely modulate the severity of the hybrid phenotype, and that only accessions carrying long RPW8.1 and short HR4 protein variants are incompatible when combined with particular RPP7 proteins. In the second project, I study a set of A. thaliana hybrid incompatibility cases where the hybrid is severely necrotic, does not develop past the cotyledon stage, and dies early on. I show that massive transcriptional changes take place in the hybrid, including the upregulation of most NLR genes, which likely contribute to its severely necrotic phenotype. I then identify the causal loci for incompatibility, DM10 and DM11, and show that DM10 is a singleton NLR that was relocated from an NLR gene cluster after A. thaliana speciation. I establish that the risk DM10 allele carries a premature stop codon, and although common and geographically widespread in the global A. thaliana population, co-occurrence with the risk DM11 allele is absent. In the third project, I screened for the presence of potential hybrid incompatibility cases occurring in natural A. arenosa populations, and show that heritable deleterious phenotypes are common, but, at least in some cases, likely the result of inbreeding depression. In short, my work presents a roadmap starting from identifying potential hybrid incompatibility cases to mapping and experimentally confirming the underlying causal loci, to establishing the underlying genetic and evolutionary processes building up to these incompatibilities

Exploring Scenedesmus obliquus and nannochloropsis sp. potential as a sustianable raw material for biofuels amd high added value compounds

In this work, the authors propose a microalga-based integrated system, where optimization of several energy vectors (biodiesel, bioethanol and bioH2) is highlighted under the concept of biorefinery (Project PTDC/AAC-AMB/100354/2008). This involves the integration of different processes such as oil and sugar extraction from microalgae for biodiesel and bioethanol production respectively, and bioH2 production from the whole and/or biomass leftovers. The extraction of high value added compounds, such as carotenoids, contributes to the economic viability of the overall process

Multiple horizontal mini-chromosome transfers drive genome evolution of clonal blast fungus lineages

Crop disease pandemics are often driven by asexually reproducing clonal lineages of plant pathogens that reproduce asexually. How these clonal pathogens continuously adapt to their hosts despite harboring limited genetic variation, and in absence of sexual recombination remains elusive. Here, we reveal multiple instances of horizontal chromosome transfer within pandemic clonal lineages of the blast fungus Magnaporthe (Syn. Pyricularia) oryzae. We identified a horizontally transferred 1.2Mb accessory mini-chromosome which is remarkably conserved between M. oryzae isolates from both the rice blast fungus lineage and the lineage infecting Indian goosegrass (Eleusine indica), a wild grass that often grows in the proximity of cultivated cereal crops. Furthermore, we show that this mini-chromosome was horizontally acquired by clonal rice blast isolates through at least nine distinct transfer events over the past three centuries. These findings establish horizontal mini-chromosome transfer as a mechanism facilitating genetic exchange among different host-associated blast fungus lineages. We propose that blast fungus populations infecting wild grasses act as genetic reservoirs that drive genome evolution of pandemic clonal lineages that afflict cereal crops

Relationship between olive oil consumption and ankle-brachial pressure index in a population at high cardiovascular risk

The aim of this study was to ascertain the association between the consumption of different categories of edible olive oils (virgin olive oils and olive oil) and olive pomace oil and ankle-brachial pressure index (ABI) in participants in the PREDIMED-Plus study, a trial of lifestyle modification for weight and cardiovascular event reduction in individuals with overweight/obesity harboring the metabolic syndrome. Methods: We performed a cross-sectional analysis of the PREDIMED-Plus trial. Consumption of any category of olive oil and olive pomace oil was assessed through a validated food-frequency questionnaire. Multivariable linear regression models were fitted to assess associations between olive oil consumption and ABI. Additionally, ABI ≤1 was considered as the outcome in logistic models with different categories of olive oil and olive pomace oil as exposure. Results: Among 4330 participants, the highest quintile of total olive oil consumption (sum of all categories of olive oil and olive pomace oil) was associated with higher mean values of ABI (beta coefficient: 0.014, 95% confidence interval [CI]: 0.002, 0.027) (p for trend = 0.010). Logistic models comparing the consumption of different categories of olive oils, olive pomace oil and ABI ≤1 values revealed an inverse association between virgin olive oils consumption and the likelihood of a low ABI (odds ratio [OR] 0.73, 95% CI [0.56, 0.97]), while consumption of olive pomace oil was positively associated with a low ABI (OR 1.22 95% CI [1.00, 1.48]). Conclusions: In a Mediterranean population at high cardiovascular risk, total olive oil consumption was associated with a higher mean ABI. These results suggest that olive oil consumption may be beneficial for peripheral artery disease prevention, but longitudinal studies are needed

Impact of COVID-19 on cardiovascular testing in the United States versus the rest of the world

Objectives: This study sought to quantify and compare the decline in volumes of cardiovascular procedures between the United States and non-US institutions during the early phase of the coronavirus disease-2019 (COVID-19) pandemic. Background: The COVID-19 pandemic has disrupted the care of many non-COVID-19 illnesses. Reductions in diagnostic cardiovascular testing around the world have led to concerns over the implications of reduced testing for cardiovascular disease (CVD) morbidity and mortality. Methods: Data were submitted to the INCAPS-COVID (International Atomic Energy Agency Non-Invasive Cardiology Protocols Study of COVID-19), a multinational registry comprising 909 institutions in 108 countries (including 155 facilities in 40 U.S. states), assessing the impact of the COVID-19 pandemic on volumes of diagnostic cardiovascular procedures. Data were obtained for April 2020 and compared with volumes of baseline procedures from March 2019. We compared laboratory characteristics, practices, and procedure volumes between U.S. and non-U.S. facilities and between U.S. geographic regions and identified factors associated with volume reduction in the United States. Results: Reductions in the volumes of procedures in the United States were similar to those in non-U.S. facilities (68% vs. 63%, respectively; p = 0.237), although U.S. facilities reported greater reductions in invasive coronary angiography (69% vs. 53%, respectively; p < 0.001). Significantly more U.S. facilities reported increased use of telehealth and patient screening measures than non-U.S. facilities, such as temperature checks, symptom screenings, and COVID-19 testing. Reductions in volumes of procedures differed between U.S. regions, with larger declines observed in the Northeast (76%) and Midwest (74%) than in the South (62%) and West (44%). Prevalence of COVID-19, staff redeployments, outpatient centers, and urban centers were associated with greater reductions in volume in U.S. facilities in a multivariable analysis. Conclusions: We observed marked reductions in U.S. cardiovascular testing in the early phase of the pandemic and significant variability between U.S. regions. The association between reductions of volumes and COVID-19 prevalence in the United States highlighted the need for proactive efforts to maintain access to cardiovascular testing in areas most affected by outbreaks of COVID-19 infection

Dementia in Latin America : paving the way towards a regional action plan

Regional challenges faced by Latin American and Caribbean countries (LACs) to fight dementia, such as heterogeneity, diversity, political instabilities, and socioeconomic disparities, can be addressed more effectively grounded in a collaborative setting based on the open exchange of knowledge. In this work, the Latin American and Caribbean Consortium on Dementia (LAC-CD) proposes an agenda for integration to deliver a Knowledge to Action Framework (KtAF). First, we summarize evidence-based strategies (epidemiology, genetics, biomarkers, clinical trials, nonpharmacological interventions, networking and translational research) and align them to current global strategies to translate regional knowledge into actions with transformative power. Then, by characterizing genetic isolates, admixture in populations, environmental factors, and barriers to effective interventions and mapping these to the above challenges, we provide the basic mosaics of knowledge that will pave the way towards a KtAF. We describe strategies supporting the knowledge creation stage that underpins the translational impact of KtAF

A biorefinery from Nannochloropsis sp. microalga – Extraction of oils and pigments. Production of biohydrogen from the leftover biomass

The microalga Nannochloropsis sp. was used in this study, in a biorefinery context, as biomass feedstock for the production of fatty acids for biodiesel, biohydrogen and high added-value compounds. The microalgal biomass, which has a high lipid and pigment content (mainly carotenoids), was submitted to supercritical CO2 extraction. The temperature, pressure and solvent flow-rate were evaluated to check their effect on the extraction yield. The best operational conditions to extract 33 glipids/100 gdry biomass were found to be at 40 °C, 300 bar and a CO2 flow-rate of 0.62 g/min. The effect of adding a co-solvent (ethanol) was also studied. When supercritical CO2 doped with 20% (w/w) ethanol was used, it was possible to extract 45 glipids/100 gdry biomass of lipids and recover 70% of the pigments. Furthermore, the remaining biomass after extraction was effectively used as feedstock to produce biohydrogen through dark fermentation by Enterobacter aerogenes resulting in a hydrogen production yield of 60.6 mL/gdry biomass

Dung removal increases under higher dung beetle functional diversity regardless of grazing intensification

Dung removal by macrofauna such as dung beetles is an important process for nutrient cycling in pasturelands. Intensification of farming practices generally reduces species and functional diversity of terrestrial invertebrates, which may negatively affect ecosystem services. Here, we investigate the effects of cattle-grazing intensification on dung removal by dung beetles in field experiments replicated in 38 pastures around the world. Within each study site, we measured dung removal in pastures managed with low- and high-intensity regimes to assess between-regime differences in dung beetle diversity and dung removal, whilst also considering climate and regional variations. The impacts of intensification were heterogeneous, either diminishing or increasing dung beetle species richness, functional diversity, and dung removal rates. The effects of beetle diversity on dung removal were more variable across sites than within sites. Dung removal increased with species richness across sites, while functional diversity consistently enhanced dung removal within sites, independently of cattle grazing intensity or climate. Our findings indicate that, despite intensified cattle stocking rates, ecosystem services related to decomposition and nutrient cycling can be maintained when a functionally diverse dung beetle community inhabits the human-modified landscape.info:eu-repo/semantics/publishedVersio