A multidisciplinary approach to the implementation of non-pharmacological strategies to manage infant pain

Hills E., Rosenberg J., Banfield N., Harding C. A multidisciplinary approach to the implementation of non-pharmacological strategies to manage infant pain. Infant 2020; 16(2): 78-81. 1. Newborn infants are capable of experiencing pain. 2. Infants requiring specialist hospital care are likely to experience painful medical procedures. 3. Unmanaged pain has a long-lasting impact on an infant’s behaviour and physiological status

Structure-function analysis of the <em>Fusarium oxysporum</em> Avr2 effector allows uncoupling of its immune-suppressing activity from recognition

Plant pathogens employ effector proteins to manipulate their hosts. Fusarium oxysporum f. sp. lycopersici (Fol), the causal agent of tomato wilt disease, produces effector protein Avr2. Besides being a virulence factor, Avr2 triggers immunity in I-2 carrying tomato (Solanum lycopersicum). Fol strains that evade I-2 recognition carry point mutations in Avr2 (e.g. Avr2R45H), but retain full virulence. Here we investigate the virulence function of Avr2 and determine its crystal structure. Transgenic tomato and Arabidopsis expressing either wild-type ΔspAvr2 (deleted signal-peptide) or the ΔspAvr2R45H variant become hypersusceptible to fungal, and even bacterial infections, suggesting that Avr2 targets a conserved defense mechanism. Indeed, Avr2 transgenic plants are attenuated in immunity-related readouts, including flg22-induced growth inhibition, ROS production and callose deposition. The crystal structure of Avr2 reveals that the protein shares intriguing structural similarity to ToxA from the wheat pathogen Pyrenophora tritici-repentis and to TRAF proteins. The I-2 resistance-breaking Avr2V41M, Avr2R45H and Avr2R46P variants cluster on a surface-presented loop. Structure-guided mutagenesis enabled uncoupling of virulence from I-2-mediated recognition. We conclude that I-2-mediated recognition is not based on monitoring Avr2 virulence activity, which includes suppression of immune responses via an evolutionarily conserved effector target, but by recognition of a distinct epitope

Deep splicing plasticity of the human adenovirus type 5 transcriptome drives virus evolution

Viral genomes have high gene densities and complex transcription strategies rendering transcriptome analysis through short-read RNA-seq approaches problematic. Adenovirus transcription and splicing is especially complex. We used long-read direct RNA sequencing to study adenovirus transcription and splicing during infection. This revealed a previously unappreciated complexity of alternative splicing and potential for secondary initiating codon usage. Moreover, we find that most viral transcripts tend to shorten polyadenylation lengths as infection progresses. Development of an open reading frame centric bioinformatics analysis pipeline provided a deeper quantitative and qualitative understanding of adenovirus’s genetic potential. Across the viral genome adenovirus makes multiple distinctly spliced transcripts that code for the same protein. Over 11,000 different splicing patterns were recorded across the viral genome, most occurring at low levels. This low-level use of alternative splicing patterns potentially enables the virus to maximise its coding potential over evolutionary timescales

Thermal tides in the Martian middle atmosphere as seen by the Mars Climate Sounder

The first systematic observations of the middle atmosphere of Mars (35–80km) with the Mars Climate Sounder (MCS) show dramatic patterns of diurnal thermal variation, evident in retrievals of temperature and water ice opacity. At the time of writing, the data set of MCS limb retrievals is sufficient for spectral analysis within a limited range of latitudes and seasons. This analysis shows that these thermal variations are almost exclusively associated with a diurnal thermal tide. Using a Martian general circulation model to extend our analysis, we show that the diurnal thermal tide dominates these patterns for all latitudes and all seasons

Enabling lightweight, high load aero-bearings

Environmental and commercial considerations are strongly driving research into weight saving in aircraft. In this research, innovative manufacturing processes were developed to produce lightweight titanium alloy bearings capable of withstanding high bearing pressures. This will enable the replacement of heavier conventional bearing materials with titanium alloy bearings of the same size thereby saving weight. Plasma processing and PVD coating techniques were refined and combined and a sound scientific understanding of the resulting novel processes developed to assure high performance, reliability and repeatability. These techniques were applied to test discs and small bearing (bush) samples, which were tested under progressively greater loads (pressures). FEA was also used to evaluate pressure distribution in a bush test assembly. The novel treatment has potential applications for many bearings and bearing surfaces throughout aircraft.peer-reviewe

Observations of the martian atmosphere with the mars climate sounder

The Mars Climate Sounder (MCS) has obtained measurements of the Martian atmosphere for one Mars year. Onboard the Mars Reconnaissance Orbiter (MRO), MCS continues to acquire high vertical resolution profiles of temperature, dust, condensates of CO2 and H2O, and water vapor by observing the limb of the atmosphere from the surface to 80 km in the spectral intervals 0.3 – 3 ?m and 11.5 – 45 ?m [1]. This paper describes the investigation and introduces some of the observations being studied by the MCS science team. Other presentations by the team at this workshop will describe in greater detail results of ongoing research using MCS data

Quality Improvement: A guide for services

This guide provides information for clinicians from organisations and services participating in PCOC to use their reports and the suite of PCOC quality improvement tools for continuous improvement, and to demonstrate improvement in patient and family/carer outcomes

Interior structure models of GJ 436b

GJ 436b is the first extrasolar planet discovered that resembles Neptune in mass and radius. The particularly interesting property of Neptune-sized planets is that their mass Mp and radius Rp are close to theoretical M-R relations of water planets. Given Mp, Rp, and equilibrium temperature, however, various internal compositions are possible. A broad set of interior structure models is presented here that illustrates the dependence of internal composition and possible phases of water occurring in presumably water-rich planets, such as GJ 436b on the uncertainty in atmospheric temperature profile and mean density. We show how the set of solutions can be narrowed down if theoretical constraints from formation and model atmospheres are applied or potentially observational constraints for the atmospheric metallicity Z1 and the tidal Love number k2. We model the interior by assuming either three layers (hydrogen-helium envelope, water layer, rock core) or two layers (H/He/H2O envelope, rocky core). For water, we use the equation of state H2O-REOS based on FT-DFT-MD simulations. Some admixture of H/He appears mandatory for explaining the measured radius. For the warmest considered models, the H/He mass fraction can reduce to 10^-3, still extending over ~0.7 REarth. If water occurs, it will be essentially in the plasma phase or in the superionic phase, but not in an ice phase. Metal-free envelope models have 0.02<k2<0.2, and the core mass cannot be determined from a measurement of k2. In contrast, models with 0.3<k2<0.82 require high metallicities Z1<0.89 in the outer envelope. The uncertainty in core mass decreases to 0.4 Mp, if k2>0.3, and further to 0.2 Mp, if k2>0.5, and core mass and Z1 become sensitive functions of k2. To further narrow the set of solutions, a proper treatment of the atmosphere and the evolution is necessary.Comment: 9 pages, accepted to A&

Automated cross-identifying radio to infrared surveys using the LRPY algorithm: A case study

Cross-identifying complex radio sources with optical or infra red (IR) counterparts in surveys such as the Australia Telescope Large Area Survey (ATLAS) has traditionally been performed manually. However, with new surveys from the Australian Square Kilometre Array Pathfinder detecting many tens of millions of radio sources, such an approach is no longer feasible. This paper presents new software (LRPY - Likelihood Ratio in PYTHON) to automate the process of cross-identifying radio sources with catalogues at other wavelengths. LRPY implements the likelihood ratio (LR) technique with a modification to account for two galaxies contributing to a sole measured radio component. We demonstrate LRPY by applying it to ATLAS DR3 and a Spitzer-based multiwavelength fusion catalogue, identifying 3848 matched sources via our LR-based selection criteria. A subset of 1987 sources have flux density values for all IRAC bands which allow us to use criteria to distinguish between active galactic nuclei (AGNs) and star-forming galaxies (SFG). We find that 936 radio sources (˜47 per cent) meet both of the Lacy and Stern AGN selection criteria. Of the matched sources, 295 have spectroscopic redshifts and we examine the radio to IR flux ratio versus redshift, proposing an AGN selection criterion below the Elvis radio-loud AGN limit for this dataset. Taking the union of all three AGNs selection criteria we identify 956 as AGNs (˜48 per cent). From this dataset, we find a decreasing fraction of AGNs with lower radio flux densities consistent with other results in the literature