232 research outputs found
GISH-based comparative genomic analysis in Urochloa P. Beauv.
The genus Urochloa P. Beauv. [syn. Brachiaria (Trin.) Griseb.] comprises species of great economic relevance as forages. The genomic constitution for the allotetraploid species Urochloa brizantha (cv. Marandu) and Urochloa decumbens (cv. Basilisk) and the diploid Urochloa ruziziensis was previously proposed as BBB1B1, B1B1B2B2 and B2B2, respectively. Evidence indicates U. ruziziensis as the ancestral donor of genome B2 in U. decumbens allotetraploidy, but the origin of the genomes B and B1 is still unknown. There are diploid genotypes of U. brizantha and U. decumbens that ay be potential ancestors of the tetraploids. The aim of this study was to determine the genomic constitution and relationships between genotypes of U. brizantha (2x and 4x), U. decumbens (2x and 4x) and U. ruziziensis (2x) via genomic in situ hybridization (GISH). Additionally, chromosome number and genome size were verified for the diploid genotypes. The diploids U. brizantha and U. decumbens presented 2n = 2x = 18 chromosomes and DNA content of 1.79 and 1.44 pg, respectively. The GISH analysis revealed high homology between the diploids U. brizantha and U. decumbens, which suggests relatively short divergence time. The GISH using genomic probes from the diploid accessions on the tetraploid accessions? chromosomes presented similar patterns, highlighting the genome B1 present in both of the tetraploids. Based on GISH results, the genomic constitution was proposed for the diploid genotypes of U. brizantha (B1B1) and U. decumbens (B1′B1′) and both were pointed as donors of genome B1 (or B1′), present in the allotetraploid genotypes
"It's a can of worms": understanding primary care practitioners' behaviours in relation to HPV using the Theoretical Domains Framework
Background: The relationship between infection with high-risk human papillomavirus (HPV) and cervical cancer is transforming cervical cancer prevention. HPV tests and vaccinations have recently become available. In Ireland, as elsewhere, primary care practitioners play a key role in prevention. ATHENS (A Trial of HPV Education and Support) aims to develop a theorybased intervention to support primary care practitioners in their HPV-related practice. This study, the first step in the intervention development process, aimed to: identify HPV-related clinical behaviours that the intervention will target; clarify general practitioners’ (GPs’) and practice nurses’ roles and responsibilities; and determine factors that potentially influence clinical behaviour. A secondary objective was to informally assess the utility of the Theoretical Domains Framework (TDF) in understanding clinical behaviours in an area with an evolving evidence-base.
Methods: In-depth semi-structured telephone interviews were conducted with GPs and practice nurses. The topic guide, which contained open questions and HPV-related clinical scenarios, was developed through literature review and clinical experience. Interview transcripts were content-analysed using the TDF as the coding framework.
Results: 19 GPs and 14 practice nurses were interviewed. The major HPV-related clinical behaviours were: initiating a discussion about HPV infection with female patients; offering/recommending HPV vaccination to appropriate patients; and answering patients’ questions about HPV testing. While the responsibility for taking smears was considered a female role, both male and female practitioners dealt with HPV-related issues. All 12 theoretical domains arose in relation to HPV infection; the domains judged to be most important were: knowledge, emotion, social influences, beliefs about capabilities and beliefs about consequences. Eleven domains emerged in relation to HPV vaccination, with beliefs about consequences, social influences, knowledge and environmental context and resources judged to be the most important. Nine domains were relevant to HPV testing, with knowledge and beliefs about capabilities judged to be the most important.
Conclusions: The findings confirm the need for an intervention to support primary care practitioners around HPV and suggest it should target a range of theoretical domains. The TDF proved valuable in analysing qualitative data collected using a topic guide not specifically designed to capture TDF domains and understanding clinical behaviours in an area with an evolving evidence-base
Antenna-coupled TES bolometers used in BICEP2, Keck array, and SPIDER
We have developed antenna-coupled transition-edge sensor (TES) bolometers for
a wide range of cosmic microwave background (CMB) polarimetry experiments,
including BICEP2, Keck Array, and the balloon borne SPIDER. These detectors
have reached maturity and this paper reports on their design principles,
overall performance, and key challenges associated with design and production.
Our detector arrays repeatedly produce spectral bands with 20%-30% bandwidth at
95, 150, or 220~GHz. The integrated antenna arrays synthesize symmetric
co-aligned beams with controlled side-lobe levels. Cross-polarized response on
boresight is typically ~0.5%, consistent with cross-talk in our multiplexed
readout system. End-to-end optical efficiencies in our cameras are routinely
35% or higher, with per detector sensitivities of NET~300 uKrts. Thanks to the
scalability of this design, we have deployed 2560 detectors as 1280 matched
pairs in Keck Array with a combined instantaneous sensitivity of ~9 uKrts, as
measured directly from CMB maps in the 2013 season. Similar arrays have
recently flown in the SPIDER instrument, and development of this technology is
ongoing.Comment: 16 pgs, 20 fig
F-Theory and the Mordell-Weil Group of Elliptically-Fibered Calabi-Yau Threefolds
The Mordell-Weil group of an elliptically fibered Calabi-Yau threefold X
contains information about the abelian sector of the six-dimensional theory
obtained by compactifying F-theory on X. After examining features of the
abelian anomaly coefficient matrix and U(1) charge quantization conditions of
general F-theory vacua, we study Calabi-Yau threefolds with Mordell-Weil
rank-one as a first step towards understanding the features of the Mordell-Weil
group of threefolds in more detail. In particular, we generate an interesting
class of F-theory models with U(1) gauge symmetry that have matter with both
charges 1 and 2. The anomaly equations --- which relate the Neron-Tate height
of a section to intersection numbers between the section and fibral rational
curves of the manifold --- serve as an important tool in our analysis.Comment: 29 pages + appendices, 5 figures; v2: minor correction
Population policies and education: exploring the contradictions of neo-liberal globalisation
The world is increasingly characterised by profound income, health and social inequalities (Appadurai, 2000). In recent decades development initiatives aimed at reducing these inequalities have been situated in a context of increasing globalisation with a dominant neo-liberal economic orthodoxy. This paper argues that neo-liberal globalisation contains inherent contradictions regarding choice and uniformity. This is illustrated in this paper through an exploration of the impact of neo-liberal globalisation on population policies and programmes. The dominant neo-liberal economic ideology that has influenced development over the last few decades has often led to alternative global visions being overlooked. Many current population and development debates are characterised by polarised arguments with strongly opposing aims and views. This raises the challenge of finding alternatives situated in more middle ground that both identify and promote the socially positive elements of neo-liberalism and state intervention, but also to limit their worst excesses within the population field and more broadly. This paper concludes with a discussion outling the positive nature of middle ground and other possible alternatives
Structure in 6D and 4D N=1 supergravity theories from F-theory
We explore some aspects of 4D supergravity theories and F-theory vacua that
are parallel to structures in the space of 6D theories. The spectrum and
topological terms in 4D supergravity theories correspond to topological data of
F-theory geometry, just as in six dimensions. In particular, topological
axion-curvature squared couplings appear in 4D theories; these couplings are
characterized by vectors in the dual to the lattice of axion shift symmetries
associated with string charges. These terms are analogous to the Green-Schwarz
terms of 6D supergravity theories, though in 4D the terms are not generally
linked with anomalies. We outline the correspondence between F-theory topology
and data of the corresponding 4D supergravity theories. The correspondence of
geometry with structure in the low-energy action illuminates topological
aspects of heterotic-F-theory duality in 4D as well as in 6D. The existence of
an F-theory realization also places geometrical constraints on the 4D
supergravity theory in the large-volume limit.Comment: 63 page
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Protocol for a feasibility study of a self help cognitive behavioural therapy resource for the reduction of dental anxiety in young people
Background
Childhood dental anxiety is very common, with 10–20 % of children and young people reporting high levels of dental anxiety. It is distressing and has a negative impact on the quality of life of young people and their parents as well as being associated with poor oral health. Affected individuals may develop a lifelong reliance on general anaesthetic or sedation for necessary dental treatment thus requiring the support of specialist dental services. Children and young people with dental anxiety therefore require additional clinical time and can be costly to treat in the long term. The reduction of dental anxiety through the use of effective psychological techniques is, therefore, of high importance. However, there is a lack of high-quality research investigating the impact of cognitive behavioural therapy (CBT) approaches when applied to young people’s dental anxiety.
Methods/design
The first part of the study will develop a profile of dentally anxious young people using a prospective questionnaire sent to a consecutive sample of 100 young people referred to the Paediatric Dentistry Department, Charles Clifford Dental Hospital, in Sheffield. The second part will involve interviewing a purposive sample of 15–20 dental team members on their perceptions of a CBT self-help resource for dental anxiety, their opinions on whether they might use such a resource with patients, and their willingness to recruit participants to a future randomised controlled trial (RCT) to evaluate the resource. The third part of the study will investigate the most appropriate outcome measures to include in a trial, the acceptability of the resource, and retention and completion rates of treatment with a sample of 60 dentally anxious young people using the CBT resource.
Discussion
This study will provide information on the profile of dentally anxious young people who could potentially be helped by a guided self-help CBT resource. It will gain the perceptions of dental care team members of guided self-help CBT for dental anxiety in young people and their willingness to recruit participants to a trial. Acceptability of the resource to participants and retention and completion rates will also be investigated to inform a future RCT
Designer Magnetoplasmonics with Nickel Nanoferromagnets
We introduce a new perspective on magnetoplasmonics in nickel nanoferromagnets by exploiting the phase tunability of the optical polarizability due to localized surface plasmons and simultaneous magneto-optical activity. We demonstrate how the concerted action of nanoplasmonics and magnetization can manipulate the sign of rotation of the reflected light’s polarization (i.e., to produce Kerr rotation reversal) in ferromagnetic nanomaterials and, further, how this effect can be dynamically controlled and employed to devise conceptually new schemes for biochemosensing. © 2011 American Chemical Society.A.D. and Z.P. acknowledge support from the Swedish Research Council and Swedish Foundation for Strategic Research (Framework program Functional Electromagnetic Metamaterials,
project RMA08). J.Å. acknowledges support from the Swedish Research Council, the Swedish Foundation for Strategic Research (Future Research Leader Programme), and the G€oran Gustafsson Foundation. J.Å. is a Royal Swedish Academy of Sciences Research Fellow supported by a grant from the Knut and Alice Wallenberg Foundation. V.B. acknowledges the G€oran Gustafsson Foundation and the Blanceflor Boncompagni-Ludovisi Foundation. P.V. acknowledges funding from the Basque Government
through the ETORGAI Program, Project No. ER-
2010/00032 and Program No. PI2009-17, the Spanish Ministry of Science and Education under Projects No. CSD2006-53 and No. MAT2009-07980. J.N. acknowledges funding for the Generalitat de Catalunya and the Spanish Ministry of Science and
Education through No. 2009-SGR-1292 and No. MAT2010-20616-C02 projects.Peer Reviewe
Sgs1 and Exo1 Redundantly Inhibit Break-Induced Replication and De Novo Telomere Addition at Broken Chromosome Ends
In budding yeast, an HO endonuclease-inducible double-strand break (DSB) is efficiently repaired by several homologous recombination (HR) pathways. In contrast to gene conversion (GC), where both ends of the DSB can recombine with the same template, break-induced replication (BIR) occurs when only the centromere-proximal end of the DSB can locate homologous sequences. Whereas GC results in a small patch of new DNA synthesis, BIR leads to a nonreciprocal translocation. The requirements for completing BIR are significantly different from those of GC, but both processes require 5′ to 3′ resection of DSB ends to create single-stranded DNA that leads to formation of a Rad51 filament required to initiate HR. Resection proceeds by two pathways dependent on Exo1 or the BLM homolog, Sgs1. We report that Exo1 and Sgs1 each inhibit BIR but have little effect on GC, while overexpression of either protein severely inhibits BIR. In contrast, overexpression of Rad51 markedly increases the efficiency of BIR, again with little effect on GC. In sgs1Δ exo1Δ strains, where there is little 5′ to 3′ resection, the level of BIR is not different from either single mutant; surprisingly, there is a two-fold increase in cell viability after HO induction whereby 40% of all cells survive by formation of a new telomere within a few kb of the site of DNA cleavage. De novo telomere addition is rare in wild-type, sgs1Δ, or exo1Δ cells. In sgs1Δ exo1Δ, repair by GC is severely inhibited, but cell viaiblity remains high because of new telomere formation. These data suggest that the extensive 5′ to 3′ resection that occurs before the initiation of new DNA synthesis in BIR may prevent efficient maintenance of a Rad51 filament near the DSB end. The severe constraint on 5′ to 3′ resection, which also abrogates activation of the Mec1-dependent DNA damage checkpoint, permits an unprecedented level of new telomere addition
Practical approaches to analyzing PTA data: Cosmic strings with six pulsars
We search for a stochastic gravitational wave background (SGWB) generated by
a network of cosmic strings using six millisecond pulsars from Data Release 2
(DR2) of the European Pulsar Timing Array (EPTA). We perform a Bayesian
analysis considering two models for the network of cosmic string loops, and
compare it to a simple power-law model which is expected from the population of
supermassive black hole binaries. Our main strong assumption is that the
previously reported common red noise process is a SGWB. We find that the
one-parameter cosmic string model is slightly favored over a power-law model
thanks to its simplicity. If we assume a two-component stochastic signal in the
data (supermassive black hole binary population and the signal from cosmic
strings), we get a upper limit on the string tension of () for the two cosmic string models we consider. In extended
two-parameter string models, we were unable to constrain the number of kinks.
We test two approximate and fast Bayesian data analysis methods against the
most rigorous analysis and find consistent results. These two fast and
efficient methods are applicable to all SGWBs, independent of their source, and
will be crucial for analysis of extended data sets.Comment: 13 pages, 5 figure
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