Atmospheric deposition of nitrogen to the Baltic Sea in the period 1995–2006

The EMEP/MSC-W model has been used to compute atmospheric nitrogen deposition into the Baltic Sea basin for the period of 12 yr: 1995–2006. The level of annual total nitrogen deposition into the Baltic Sea basin has changed from 230 Gg N in 1995 to 199 Gg N in 2006, decreasing 13 %. This value corresponds well with the total nitrogen emission reduction (11 %) in the HELCOM Contracting Parties. However, inter-annual variability of nitrogen deposition to the Baltic Sea basin is relatively large, ranging from −13 % to +17 % of the averaged value. It is mainly caused by the changing meteorological conditions and especially precipitation in the considered period. The calculated monthly deposition pattern is similar for most of the years showing maxima in the autumn months October and November. The source allocation budget for atmospheric nitrogen deposition to the Baltic Sea basin was calculated for each year of the period 1997–2006. The main emission sources contributing to total nitrogen deposition are: Germany 18–22 %, Poland 11–13 % and Denmark 8–11 %. There is also a significant contribution from distant sources like the United Kingdom 6–9 %, as well as from the international ship traffic on the Baltic Sea 4–5 %

Uso de métodos alternativos na desinfestação de Cryptosporiosis perennans em maçãs 'Gala' e "Fuji' na pós-colheita.

o objetivo deste trabalho foi avaliar o efeito de métodos altemativos no controle de C. perennans na superfície de maçãs em pós-colheita.Resumo

Uso de tratamento térmico em maçãs 'Fuji' para controle da podridão "olho-de-boi" (Cryptosporiosis perennans) na pós-colheita.

Avaliou-se o efeito da aspersão de água aquecida no controle da podridão "olhode-boi" em maçãs da cultivar Fuji Kiku em pós-colheita.Resumo

A molecular insight into algal-oomycete warfare : cDNA analysis of Ectocarpus siliculosus infected with the basal oomycete Eurychasma dicksonii

Peer reviewedPublisher PD

Comparação de maçã de cultivares mutantes de gala e de fuji quanto à maturação e qualidade na colheita e após a armazenagem.

Os cultivares de maçãs 'Gala' e 'Fuji' foram desenvolvidos por métodos convencionais de hibridação na década de 30 e, desde então, inúmeras variedades resultantes de mutações ocorridas naturalmente em macieiras desses cultivares têm sido identificadas (White, 1991)

The RNAi machinery controls distinct responses to environmental signals in the basal fungus Mucor circinelloides

BACKGROUND: RNA interference (RNAi) is a conserved mechanism of genome defence that can also have a role in the regulation of endogenous functions through endogenous small RNAs (esRNAs). In fungi, knowledge of the functions regulated by esRNAs has been hampered by lack of clear phenotypes in most mutants affected in the RNAi machinery. Mutants of Mucor circinelloides affected in RNAi genes show defects in physiological and developmental processes, thus making Mucor an outstanding fungal model for studying endogenous functions regulated by RNAi. Some classes of Mucor esRNAs map to exons (ex-siRNAs) and regulate expression of the genes from which they derive. To have a broad picture of genes regulated by the silencing machinery during vegetative growth, we have sequenced and compared the mRNA profiles of mutants in the main RNAi genes by using RNA-seq. In addition, we have achieved a more complete phenotypic characterization of silencing mutants.  RESULTS: Deletion of any main RNAi gene provoked a deep impact in mRNA accumulation at exponential and stationary growth. Genes showing increased mRNA levels, as expected for direct ex-siRNAs targets, but also genes with decreased expression were detected, suggesting that, most probably, the initial ex-siRNA targets regulate the expression of other genes, which can be up- or down-regulated. Expression of 50% of the genes was dependent on more than one RNAi gene in agreement with the existence of several classes of ex-siRNAs produced by different combinations of RNAi proteins. These combinations of proteins have also been involved in the regulation of different cellular processes. Besides genes regulated by the canonical RNAi pathway, this analysis identified processes, such as growth at low pH and sexual interaction that are regulated by a dicer-independent non-canonical RNAi pathway.  CONCLUSION: This work shows that the RNAi pathways play a relevant role in the regulation of a significant number of endogenous genes in M. circinelloides during exponential and stationary growth phases and opens up an important avenue for in-depth study of genes involved in the regulation of physiological and developmental processes in this fungal model

Chlamydospore formation by Paracoccidioides brasiliensis mycelial form

To investigate the role of some adverse environmental conditions in chlamy-dospore formation by the mycelial form of P. brasiliensis, we cultured four P. brasiliensis isolates (18, Bt4, 1183, Pb9) at 25°C within solid agar medium either rich or poor in nutrients. Isolates 18 and 1183 were also cultured under anaerobiosis in a nitrogen atmosphere. Isolate 18 produced great number of terminal and intercalary chlamydospore after 7-10 days of culture in a medium poor in nutrients (2% agar with 0.1% dextrose and polypepton). The three other isolates also produced chlamydospores under the same conditions, but in lower numbers. Chlamydospore production by isolate 18 was abolished when the fungus was cultured in two agar media rich in nutrients (brain heart infusion and potato dextrose agar). Anaerobic incubation of isolate 18 under an atmosphere of N2 showed small mycelial outgrowth with numerous chlamydospores. At the electron microscopical level, the chlamydospores showed one or various nuclei and numerous mitochondria, indicating great potential for further development. Accordingly, chlamydospores produced multiple budding after only 24 h incubation at 35°C. The results demonstrate that under adverse environmental conditions P. brasiliensis mycelial form produces chlamydospores within a short period of time

Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level

<p>Abstract</p> <p>Background</p> <p><it>Rhizopus oryzae </it>is a zygomycete filamentous fungus, well-known as a saprobe ubiquitous in soil and as a pathogenic/spoilage fungus, causing Rhizopus rot and mucomycoses.</p> <p>Results</p> <p>Carbohydrate Active enzyme (CAZy) annotation of the <it>R. oryzae </it>identified, in contrast to other filamentous fungi, a low number of glycoside hydrolases (GHs) and a high number of glycosyl transferases (GTs) and carbohydrate esterases (CEs). A detailed analysis of CAZy families, supported by growth data, demonstrates highly specialized plant and fungal cell wall degrading abilities distinct from ascomycetes and basidiomycetes. The specific genomic and growth features for degradation of easily digestible plant cell wall mono- and polysaccharides (starch, galactomannan, unbranched pectin, hexose sugars), chitin, chitosan, β-1,3-glucan and fungal cell wall fractions suggest specific adaptations of <it>R. oryzae </it>to its environment.</p> <p>Conclusions</p> <p>CAZy analyses of the genome of the zygomycete fungus <it>R. oryzae </it>and comparison to ascomycetes and basidiomycete species revealed how evolution has shaped its genetic content with respect to carbohydrate degradation, after divergence from the Ascomycota and Basidiomycota.</p