A Holistic Approach to Log Data Analysis in High-Performance Computing Systems: The Case of IBM Blue Gene/Q

The complexity and cost of managing high-performance computing infrastructures are on the rise. Automating management and repair through predictive models to minimize human interventions is an attempt to increase system availability and contain these costs. Building predictive models that are accurate enough to be useful in automatic management cannot be based on restricted log data from subsystems but requires a holistic approach to data analysis from disparate sources. Here we provide a detailed multi-scale characterization study based on four datasets reporting power consumption, temperature, workload, and hardware/software events for an IBM Blue Gene/Q installation. We show that the system runs a rich parallel workload, with low correlation among its components in terms of temperature and power, but higher correlation in terms of events. As expected, power and temperature correlate strongly, while events display negative correlations with load and power. Power and workload show moderate correlations, and only at the scale of components. The aim of the study is a systematic, integrated characterization of the computing infrastructure and discovery of correlation sources and levels to serve as basis for future predictive modeling efforts.Comment: 12 pages, 7 Figure

The Potential for Machine Learning Analysis over Encrypted Data in Cloud-based Clinical Decision Support - Background and Review

This paper appeared at the 8th Australasian Workshop on Health Informatics and Knowledge Management (HIKM 2015), Sydney, Australia, January 2015. Conferences in Research and Practice in Information Technology (CRPIT), Vol. 164, Anthony Maeder and Jim Warren, Ed. Reproduction for academic, not-for profit purposes permitted provided this text is includedIn an effort to reduce the risk of sensitive data exposure in untrusted networks such as the public cloud, increasing attention has recently been given to encryption schemes that allow specific computations to occur on encrypted data, without the need for decryption. This relies on the fact that some encryption algorithms display the property of homomorphism, which allows them to manipulate data in a meaningful way while still in encrypted form. Such a framework would find particular relevance in Clinical Decision Support (CDS) applications deployed in the public cloud. CDS applications have an important computational and analytical role over confidential healthcare information with the aim of supporting decision-making in clinical practice. This review paper examines the history and current status of homomoprhic encryption and its potential for preserving the privacy of patient data underpinning cloud-based CDS applications

Direct Fragmentation of Quarkonia Including Fermi Motion Using Light-cone Wave Function

We investigate the effect of Fermi motion on the direct fragmentation of the $J/\psi$ and $\Upsilon$ states employing a light-cone wave function. Consistent with such a wave function we set up the kinematics of a heavy quark fragmenting into a quarkonia such that the Fermi motion of the constituents split into longitudinal as well as transverse direction and thus calculate the fragmentation functions for these states. In the framework of our investigation, we estimate that the fragmentation probabilities of $J/\psi$ and $\Upsilon$ may increase at least up to 14 percent when including this degree of freedom.Comment: 7 pages 5 figures Appeared in EPJC; Fig 1 and Appendix revise

Free Flying Magnetometers as a Demonstration of Micro-spacecraft Technologies

Four Free Flying Magnetometers (FFMs) flew on the Enstrophy sounding rocket launched on February 10, 1999 from Poker Flats Research Range. Each of these FFMs is a highly integrated sensorcraft , containing their own data, attitude determination, telecom, and power systems in addition to a small 3-axis magnetometer. All of this was fit into a package a little bigger than a hockey puck and weighed less than 250 grams. The FFM technology development task was funded by NASA/JPL

Onset of dispersion in Nb microstrip transmission lines at submillimeter wave frequencies

We have measured the dispersion in phase velocity of a Nb-SiO(x)-Nb microstrip transmission line resonator over a frequency range from 50 GHz to 800 GHz. A submicron Nb/Al-AlO(x)/Nb Josephson junction was used as a voltage-controlled oscillator to excite the high order modes in the resonator. The same junction is used as a direct detector resulting in a series of step-like structures in the DC current-voltage characteristic at the position of each mode frequency. The transmission line is dispersionless up to about 500 GHz where the phase velocity begins to decrease. This is well below the gap frequency f(sub g) approx. equals 700 GHz. Results agree qualitatively with the expected theoretical behavior near f(sub g). This onset of dispersion and loss in Nb transmission lines will have a significant impact on the design of submillimeter wave RF circuits

Flow Control in a Cavity with Tiny-Obstacles on the Walls for Mixing Enhancement Part I: Flow Physics

This paper seeks to make a study on flow control in two-dimensional square cavities having obstacles on their walls. The goal of using these passive controllers is to enhance mixing in an enclosed space. Lattice Boltzmann method is used to simulate the problem. Results are presented for various Reynolds numbers, 400≤Re≤4000 and different arrangements of tiny-obstacles with different heights. To give a perspective on the physics of this problem, time evolution of the flow is studied at Re = 1000. Then, the flow structure is studied for different Reynolds numbers. Findings show that the interaction of the main vortex with the tiny-obstacles inserted on the wall cavity changes the flow pattern at higher Reynolds numbers totally which is of high importance for mixing, such that the main primary vortex turns into a scooplike vortex along the upper wall. Also, merging the two bottom corner vortices forms a main secondary vortex which fills the cavity. Results show that obstacles heights and the gap between the upper wall and the upper obstacle are key parameters from flow control and mixing viewpoint. Also, the number of tiny-obstacles can be considered as another tool in this regard. The spaces between the obstacles don’t have much influence on the flow behavior. Obstacles with δ≤2% don’t change the flow field and can’t be considered as a flow control tool

Epidemiological Aspects of Visceral Leishmaniasis in Baft District, Kerman Province, Southeast of Iran

Background: Visceral leishmaniasis (kala-azar) is an endemic disease in some areas of Iran. A cross- sectional study was conducted for sero-epidemiological survey of visceral leishmaniasis (VL) in Baft district from Kerman Province, southeast of Iran.Methods: Blood samples were collected from children up to 12 years old and 10% of adult population from Baft villages with a multi-stage randomized cluster sampling. In addition, blood samples were collected from 30 domestic dogs from the same areas. All the collected blood sam­ples were tested by direct agglutination test (DAT) for the detection of anti-Leishmania antibod­ies in both human and dog using the cut-off value of ≥1:3200 and ≥ 1:320, respectively. Parasitologi­cal, molecular, and pathological were performed on infected dogs. Chi-square and Fisher exact tests were used to compare sero-prevalence values.Results: From 1476 collected human serum samples, 23 (1.55%) showed anti-Leishmania antibod­ies at titers of 1:800 and 1:1600 whereas 14 (0.95%) showed anti-Leishmania infantum antibodies at titers of ≤ 1:3200. No statistically significant difference was found between male (1.18 %) and female (0.69%) sero-prevalence (P=0.330). Children of 5-8 years showed the high­est sero-prevalence rate (3.22%). Seven out of 30 domestic dogs (23%) showed anti-Leishmania antibodies at titers ≤1:320. Leishmania infantum was identified in five infected dogs by nested - PCR assay.Conclusion: It seems that visceral leishmaniasis is being endemic in southern villages of Baft district, southeast of Iran

Preoperative 99mTc-sestamibi scintigraphy in patients with primary hyperparathyroidism and concomitant nodular goiter: Comparison of SPECT-CT, SPECT, and planar imaging

Background: Investigations using a hybrid single photon emission computed tomography/computed tomography (SPECT-CT) scanning technique have been carried out in limited studies and have shown mixed results. However, the assessment of this technique for the detection of parathyroid adenoma in patients with a nodular goiter was performed in only one study with a small sample size. The aim of this prospective study was to assess the role of Tc-sestamibi parathyroid SPECT-CT scans for localization of parathyroid adenomas with a concomitant nodular goiter using Tc-methoxyisobutyl isonitrile (MIBI) scintigraphy and to compare it with SPECT and planar imaging. Methods: This study was conducted on 48 patients with primary hyperparathyroidism and nodular goiter, who were candidates for parathyroid surgery and had been referred for parathyroid scintigraphy. The patients underwent an early set of planar Tc-MIBI scanning procedures first, followed by SPECT and CT scannings, and finally a delayed set of planar Tc-MIBI scannings. Sensitivity, specificity, negative and positive predictive values, and accuracy were determined on a per-parathyroid-gland basis for each scanning method, as defined by histology and follow-up. Results: The surgery was successful in 48 out of 50 patients with primary hyperparathyroidism concomitant with thyroid nodularity, and data were completed for 80 sites in 48 patients. The accuracy of SPECT-CT in correctly identifying a parathyroid adenoma was 85.00, versus 75.00% for SPECT (P=0.01, significant). The sensitivity and specificity for SPECT-CT were 77.55 and 96.77%, respectively, versus 67.34 and 87.09%, respectively, for SPECT (P=0.12 and 0.12, not significant). There were nine sites that showed better localization on SPECT-CT scans relative to SPECT images, of which five sites were located in the ectopic regions. Conclusion: The results of our study indicate that SPECT-CT is more accurate than sestamibi planar imaging and SPECT for the preoperative identification of parathyroid lesions in patients with primary hyperparathyroidism concomitant with thyroid nodularity. Also, we would recommend the use of SPECT-CT for a workup of all patients with ectopic glands who are scheduled for minimally invasive parathyroid surgery. © 2012 Wolters Kluwer Health | Lippincott Williams & Wilkins