Rotating turbulence under "precession-like" perturbation

The effects of changing the orientation of the rotation axis on homogeneous turbulence is considered. We perform direct numerical simulations on a periodic box of $1024^3$ grid points, where the orientation of the rotation axis is changed (a) at a fixed time instant (b) regularly at time intervals commensurate with the rotation time scale. The former is characterized by a dominant inverse energy cascade whereas in the latter, the inverse cascade is stymied due to the recurrent changes in the rotation axis resulting in a strong forward energy transfer and large scale structures that resemble those of isotropic turbulence.Comment: 7 pages, 8 figures, The European Physical Journal E (EPJ E

A numerical study of the alpha model for two-dimensional magnetohydrodynamic turbulent flows

We explore some consequences of the ``alpha model,'' also called the ``Lagrangian-averaged'' model, for two-dimensional incompressible magnetohydrodynamic (MHD) turbulence. This model is an extension of the smoothing procedure in fluid dynamics which filters velocity fields locally while leaving their associated vorticities unsmoothed, and has proved useful for high Reynolds number turbulence computations. We consider several known effects (selective decay, dynamic alignment, inverse cascades, and the probability distribution functions of fluctuating turbulent quantities) in magnetofluid turbulence and compare the results of numerical solutions of the primitive MHD equations with their alpha-model counterparts' performance for the same flows, in regimes where available resolution is adequate to explore both. The hope is to justify the use of the alpha model in regimes that lie outside currently available resolution, as will be the case in particular in three-dimensional geometry or for magnetic Prandtl numbers differing significantly from unity. We focus our investigation, using direct numerical simulations with a standard and fully parallelized pseudo-spectral method and periodic boundary conditions in two space dimensions, on the role that such a modeling of the small scales using the Lagrangian-averaged framework plays in the large-scale dynamics of MHD turbulence. Several flows are examined, and for all of them one can conclude that the statistical properties of the large-scale spectra are recovered, whereas small-scale detailed phase information (such as e.g. the location of structures) is lost.Comment: 22 pages, 20 figure

Shell to shell energy transfer in MHD, Part I: steady state turbulence

We investigate the transfer of energy from large scales to small scales in fully developed forced three-dimensional MHD-turbulence by analyzing the results of direct numerical simulations in the absence of an externally imposed uniform magnetic field. Our results show that the transfer of kinetic energy from the large scales to kinetic energy at smaller scales, and the transfer of magnetic energy from the large scales to magnetic energy at smaller scales, are local, as is also found in the case of neutral fluids, and in a way that is compatible with Kolmogorov (1941) theory of turbulence. However, the transfer of energy from the velocity field to the magnetic field is a highly non-local process in Fourier space. Energy from the velocity field at large scales can be transfered directly into small scale magnetic fields without the participation of intermediate scales. Some implications of our results to MHD turbulence modeling are also discussed.Comment: Submitted to PR

On spectral scaling laws for incompressible anisotropic MHD turbulence

A heuristic model is given for anisotropic magnetohydrodynamics (MHD) turbulence in the presence of a uniform external magnetic field B_0 {\bf {\hat e}_{\pa}}. The model is valid for both moderate and strong $B_0$ and is able to describe both the strong and weak wave turbulence regimes as well as the transition between them. The main ingredient of the model is the assumption of constant ratio at all scales between \add{the} linear wave period and \add{the} nonlinear turnover timescale. Contrary to the model of critical balance introduced by Goldreich and Sridhar [P. Goldreich and S. Sridhar, ApJ {\bf 438}, 763 (1995)], it is not assumed in addition that this ratio be equal to unity at all scales which allows us to use the Iroshnikov-Kraichnan phenomenology. It is then possible to recover the widely observed anisotropic scaling law \kpa \propto \kpe^{2/3} between parallel and perpendicular wavenumbers (with reference to B_0 {\bf {\hat e}_{\pa}}) and to obtain the universal prediction, $3\alpha + 2\beta = 7$, for the total energy spectrum E(\kpe,\kpa) \sim \kpe^{-\alpha} \kpa^{-\beta}. In particular, with such a prediction the weak Alfv\'en wave turbulence constant-flux solution is recovered and, for the first time, a possible explanation to its precursor found numerically by Galtier et al [S. Galtier et al., J. Plasma Phys. {\bf 63}, 447 (2000)] is given

Anisotropy and non-universality in scaling laws of the large scale energy spectrum in rotating turbulence

Rapidly rotating turbulent flow is characterized by the emergence of columnar structures that are representative of quasi-two dimensional behavior of the flow. It is known that when energy is injected into the fluid at an intermediate scale $L_f$, it cascades towards smaller as well as larger scales. In this paper we analyze the flow in the \textit{inverse cascade} range at a small but fixed Rossby number, {$\mathcal{R}o_f \approx 0.05$}. Several {numerical simulations with} helical and non-helical forcing functions are considered in periodic boxes with unit aspect ratio. In order to resolve the inverse cascade range with {reasonably} large Reynolds number, the analysis is based on large eddy simulations which include the effect of helicity on eddy viscosity and eddy noise. Thus, we model the small scales and resolve explicitly the large scales. We show that the large-scale energy spectrum has at least two solutions: one that is consistent with Kolmogorov-Kraichnan-Batchelor-Leith phenomenology for the inverse cascade of energy in two-dimensional (2D) turbulence with a {$\sim k_{\perp}^{-5/3}$} scaling, and the other that corresponds to a steeper {$\sim k_{\perp}^{-3}$} spectrum in which the three-dimensional (3D) modes release a substantial fraction of their energy per unit time to 2D modes. {The spectrum that} emerges {depends on} the anisotropy of the forcing function{,} the former solution prevailing for forcings in which more energy is injected into 2D modes while the latter prevails for isotropic forcing. {In the case of anisotropic forcing, whence the energy} goes from the 2D to the 3D modes at low wavenumbers, large-scale shear is created resulting in another time scale $\tau_{sh}$, associated with shear, {thereby producing} a $\sim k^{-1}$ spectrum for the {total energy} with the 2D modes still following a {$\sim k_{\perp}^{-5/3}$} scaling

Numerical solutions of the three-dimensional magnetohydrodynamic alpha-model

We present direct numerical simulations and alpha-model simulations of four familiar three-dimensional magnetohydrodynamic (MHD) turbulence effects: selective decay, dynamic alignment, inverse cascade of magnetic helicity, and the helical dynamo effect. The MHD alpha-model is shown to capture the long-wavelength spectra in all these problems, allowing for a significant reduction of computer time and memory at the same kinetic and magnetic Reynolds numbers. In the helical dynamo, not only does the alpha-model correctly reproduce the growth rate of magnetic energy during the kinematic regime, but it also captures the nonlinear saturation level and the late generation of a large scale magnetic field by the helical turbulence.Comment: 12 pages, 19 figure

Shell to shell energy transfer in MHD, Part II: Kinematic dynamo

We study the transfer of energy between different scales for forced three-dimensional MHD turbulent flows in the kinematic dynamo regime. Two different forces are examined: a non-helical Taylor Green flow with magnetic Prandtl number P_M=0.4, and a helical ABC flow with P_M=1. This analysis allows us to examine which scales of the velocity flow are responsible for dynamo action, and identify which scales of the magnetic field receive energy directly from the velocity field and which scales receive magnetic energy through the cascade of the magnetic field from large to small scales. Our results show that the turbulent velocity fluctuations are responsible for the magnetic field amplification in the small scales (small scale dynamo) while the large scale field is amplified mostly due to the large scale flow. A direct cascade of the magnetic field energy from large to small scales is also present and is a complementary mechanism for the increase of the magnetic field in the small scales. Input of energy from the velocity field in the small magnetic scales dominates over the energy that is cascaded down from the large scales until the large-scale peak of the magnetic energy spectrum is reached. At even smaller scales, most of the magnetic energy input is from the cascading process.Comment: Submitted to PR

Polysaccharide utilization loci and nutritional specialization in a dominant group of butyrate-producing human colonic Firmicutes

Acknowledgements The Rowett Institute of Nutrition and Health (University of Aberdeen) receives financial support from the Scottish Government Rural and Environmental Sciences and Analytical Services (RESAS). POS is a PhD student supported by the Scottish Government (RESAS) and the Science Foundation Ireland, through a centre award to the APC Microbiome Institute, Cork, Ireland. Data Summary The high-quality draft genomes generated in this work were deposited at the European Nucleotide Archive under the following accession numbers: 1. Eubacterium rectale T1-815; CVRQ01000001–CVRQ0100 0090: http://www.ebi.ac.uk/ena/data/view/PRJEB9320 2. Roseburia faecis M72/1; CVRR01000001–CVRR010001 01: http://www.ebi.ac.uk/ena/data/view/PRJEB9321 3. Roseburia inulinivorans L1-83; CVRS01000001–CVRS0 100 0151: http://www.ebi.ac.uk/ena/data/view/PRJEB9322Peer reviewedPublisher PD

The positive effect of mirror visual feedback on arm control in children with Spastic Hemiparetic Cerebral Palsy is dependent on which arm is viewed

Mirror visual feedback has previously been found to reduce disproportionate interlimb variability and neuromuscular activity in the arm muscles in children with Spastic Hemiparetic Cerebral Palsy (SHCP). The aim of the current study was to determine whether these positive effects are generated by the mirror per se (i.e. the illusory perception of two symmetrically moving limbs, irrespective of which arm generates the mirror visual feedback) or by the visual illusion that the impaired arm has been substituted and appears to move with less jerk and in synchrony with the less-impaired arm (i.e. by mirror visual feedback of the less-impaired arm only). Therefore, we compared the effect of mirror visual feedback from the impaired and the less-impaired upper limb on the bimanual coupling and neuromuscular activity during a bimanual coordination task. Children with SHCP were asked to perform a bimanual symmetrical circular movement in three different visual feedback conditions (i.e. viewing the two arms, viewing only one arm, and viewing one arm and its mirror image), combined with two head orientation conditions (i.e. looking from the impaired and looking from the less-impaired body side). It was found that mirror visual feedback resulted in a reduction in the eccentric activity of the Biceps Brachii Brevis in the impaired limb compared to the condition with actual visual feedback from the two arms. More specifically, this effect was exclusive to mirror visual feedback from the less-impaired arm and absent when mirror visual feedback from the impaired arm was provided. Across conditions, the less-impaired arm was the leading limb, and the nature of this coupling was independent from visual condition or head orientation. Also, mirror visual feedback did not affect the intensity of the mean neuromuscular activity or the muscle activity of the Triceps Brachii Longus. It was concluded that the positive effects of mirror visual feedback in children with SHCP are not just the result of the perception of two symmetrically moving limbs. Instead, in order to induce a decrease in eccentric neuromuscular activity in the impaired limb, mirror visual feedback from the ‘unaffected’ less-impaired limb is required