Clinical and Mucosal Immune Correlates of HIV-1 Semen Levels in Antiretroviral-Naive Men.

Background. This study was done to characterize parameters associated with semen human immunodeficiency virus (HIV)-1 ribonucleic acid (RNA) viral load (VL) variability in HIV-infected, therapy-naive men. Methods. Paired blood and semen samples were collected from 30 HIV-infected, therapy-naive men who have sex with men, and 13 participants were observed longitudinally for up to 1 year. Human immunodeficiency virus RNA, bacterial load by 16S RNA, herpesvirus (Epstein-Barr virus and cytomegalovirus [CMV]) shedding, and semen cytokines/chemokines were quantified, and semen T-cell subsets were assessed by multiparameter flow cytometry. Results. Semen HIV RNA was detected at 93% of visits, with \u3e50% of men shedding high levels of virus (defined as \u3e5000 copies/mL). In the baseline cross-sectional analysis, an increased semen HIV VL correlated with local CMV reactivation, the semen bacterial load, and semen inflammatory cytokines, particularly interleukin (IL)-8. T cells in semen were more activated than blood, and there was an increased frequency of Th17 cells and γδ-T-cells. Subsequent prospective analysis demonstrated striking interindividual variability in HIV and CMV shedding patterns, and only semen IL-8 levels and the blood VL were independently associated with semen HIV levels. Conclusions. Several clinical and immune parameters were associated with increased HIV semen levels in antiretroviral therapy-naive men, with induction of local proinflammatory cytokines potentially acting as a common pathway

Efficient Chemoenzymatic Synthesis of an N-glycan Isomer Library

Quantification, characterization and biofunctional studies of N-glycans on proteins remain challenging tasks due to the complexity, diversity and low abundance of these glycans. The availability of structurally defined N-glycan (especially isomer) libraries is essential to help solve these tasks. We report herein an efficient chemoenzymatic strategy, namely Core Synthesis/Enzymatic Extension (CSEE), for rapid production of diverse N-glycans. Starting with 5 chemically prepared building blocks, 8 N-glycan core structures containing one or two terminal N-acetyl-D-glucosamine (GlcNAc) residue(s) were chemically synthesized via consistent use of oligosaccharyl thioethers as glycosylation donors in a convergent fragment coupling strategy. Each of these core structures was then extended to 5 to 15 N-glycan sequences by enzymatic reactions catalyzed by 4 robust glycosyltransferases. Success in synthesizing N-glycans with Neu5Gc and core-fucosylation further expanded the ability of the enzymatic extension. Meanwhile, high performance liquid chromatography with an amide column enabled rapid and efficient purification (\u3e98% purity) of N-glycans in milligram scales. A total of 73 N-glycans (63 isomers) were successfully prepared and characterized by MS2 and NMR. In summary, the CSEE strategy provides a practical approach for “mass production” of structurally defined N-glycans, which are important standards and probes for glycoscience

Ион-парная ВЭЖХ производных пиримидина и пурина

ПИРИМИДИНЫГЕТЕРОЦИКЛИЧЕСКИЕ СОЕДИНЕНИЯ ОДНОКОЛЬЦЕВЫЕПУРИНЫГЕТЕРОЦИКЛИЧЕСКИЕ СОЕДИНЕНИЯ ДВУХКОЛЬЦЕВЫЕХРОМАТОГРАФИЯ ЖИДКОСТНАЯ ВЫСОКОГО ДАВЛЕНИЯХРОМАТОГРАФИЯ ИОНООБМЕННАЯДНКРНКПРОТИВООПУХОЛЕВЫЕ СРЕДСТВАПРОТИВОВИРУСНЫЕ СРЕДСТВ

Resistance to wheat rusts identified in wheat/Amblyopyrum muticum chromosome introgressions

© 2020 The Authors. Crop Science © 2020 Crop Science Society of America Wheat (Triticum aestivum L.) rusts are a worldwide production problem. Plant breeders have used genetic resistance to combat these fungi. However, single-gene resistance is rapidly overcome as a result of frequent occurrence of new virulent fungal strains. Thus, a supply of new resistance sources is continually needed, and new resistance sources are limited within hexaploid wheat genetic stocks. Wild relatives are able to be a resource for new resistance genes but are hindered because of chromosome incapability with domesticated wheats. Twenty-eight double-haploid hexaploid wheat/Amblyopyrum muticum (Boiss.) Eig introgression lines, with introgressions covering the majority of the T genome, were evaluated for resistance to Puccinia triticina Erikss., P. graminis Pers.:Pers. f.sp. tritici Erikss. & E. Henning, and P. striiformis Westend. f.sp. tritici Erikss. At the seedling level, four lines were resistant to races of P. triticina, six lines were resistant to P. graminis, and 15 lines were resistant to P. striiformis. At the adult stage, 16 lines were resistant to P. triticina. Line 355 had resistance to all three rusts and line 161 had resistance to all tested races of P. triticina. Some of these lines will require further work to reduce the size of the introgressed segment; however, lines 92 and 355 have very small fragments and can be used directly as new resistance donors

Quaternary Structure Defines a Large Class of Amyloid-β Oligomers Neutralized by Sequestration

SummaryThe accumulation of amyloid-β (Aβ) as amyloid fibrils and toxic oligomers is an important step in the development of Alzheimer’s disease (AD). However, there are numerous potentially toxic oligomers and little is known about their neurological effects when generated in the living brain. Here we show that Aβ oligomers can be assigned to one of at least two classes (type 1 and type 2) based on their temporal, spatial, and structural relationships to amyloid fibrils. The type 2 oligomers are related to amyloid fibrils and represent the majority of oligomers generated in vivo, but they remain confined to the vicinity of amyloid plaques and do not impair cognition at levels relevant to AD. Type 1 oligomers are unrelated to amyloid fibrils and may have greater potential to cause global neural dysfunction in AD because they are dispersed. These results refine our understanding of the pathogenicity of Aβ oligomers in vivo

The eROSITA view of the Abell 3391/95 field: The Northern Clump. The largest infalling structure in the longest known gas filament observed with eROSITA, XMM-Newton, and Chandra

SRG/eROSITA PV observations revealed the A3391/95 cluster system and the Northern Clump (MCXC J0621.7-5242 galaxy cluster) are aligning along a cosmic filament in soft X-rays, similarly to what has been seen in simulations before. We aim to understand the dynamical state of the Northern Clump as it enters the atmosphere ($3\times R_{200}$) of A3391. We analyzed joint eROSITA, XMM-Newton, and Chandra observations to probe the morphological, thermal, and chemical properties of the Northern Clump from its center out to a radius of 988 kpc ($R_{200}$). We utilized the ASKAP/EMU radio data, DECam optical image, and Planck y-map to study the influence of the WAT radio source on the Northern Clump central ICM. From the Magneticum simulation, we identified an analog of the A3391/95 system along with an infalling group resembling the Northern Clump. The Northern Clump is a WCC cluster centered on a WAT radio galaxy. The gas temperature over $0.2-0.5R_{500}$ is $k_BT_{500}=1.99\pm0.04$ keV. We employed the $M-T$ scaling relation and obtained a mass estimate of $M_{500}=(7.68\pm0.43)\times10^{13}M_{\odot}$ and $R_{500}=(636\pm12)$ kpc. Its atmosphere has a boxy shape and deviates from spherical symmetry. We identify a southern surface brightness edge, likely caused by subsonic motion relative to the filament gas. At $\sim\! R_{500}$, the southern atmosphere appears to be 42% hotter than its northern atmosphere. We detect a downstream tail pointing toward the north with a projected length of $\sim318$ kpc, plausibly the result of ram pressure stripping. The analog group in the Magneticum simulation is experiencing changes in its gas properties and a shift between the position of the halo center and that of the bound gas, while approaching the main cluster pair.Comment: 24 pages, 17 figures (main text), 6 figures (appendix). Submitted to A&A for the Special Issue: The Early Data Release of eROSITA and Mikhail Pavlinsky ART-XC on the SRG Mission. For more information, see https://astro.uni-bonn.de/~averonica/NorthernClump/eROSITA_A3391_Northern_Clump_AIfA.htm

The eROSITA extragalactic CalPV serendipitous catalog

Context. The eROSITA X-ray telescope on board the Spectrum-Roentgen-Gamma (SRG) observatory performed calibration and performance verification (CalPV) observations between September 2019 and December 2019, ahead of the planned 4-yr all-sky surveys. Most of them were deep, pointing-mode observations. Aims. We present here the X-ray catalog detected from the set of extra-galactic CalPV observations released to the public by the German eROSITA consortium, and the multiband counterparts of these X-ray sources. Methods. We developed a source detection method optimized for point-like X-ray sources by including extended X-ray emission in the background measurement. The multiband counterparts were identified using a Bayesian method from the CatWISE catalog. Results. Combining 11 CalPV fields, we present a catalog containing 9515 X-ray sources, whose X-ray fluxes were measured through spectral fitting. CatWISE counterparts are presented for 77% of the sources. Significant variabilities are found in 99 of the sources, which are also presented with this paper. Most of these fields show similar number counts of point sources as typical extragalactic fields, and a few harbor particular stellar populations

A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures

MicroRNAs (miRNAs) are important components of cellular signaling pathways, acting either as pathway regulators or pathway targets. Currently, only a limited number of miRNAs have been functionally linked to specific signaling pathways. Here, we explored if gene expression signatures could be used to represent miRNA activities and integrated with genomic signatures of oncogenic pathway activity to identify connections between miRNAs and oncogenic pathways on a high-throughput, genome-wide scale. Mapping >300 gene expression signatures to >700 primary tumor profiles, we constructed a genome-wide miRNA–pathway network predicting the associations of 276 human miRNAs to 26 oncogenic pathways. The miRNA–pathway network confirmed a host of previously reported miRNA/pathway associations and uncovered several novel associations that were subsequently experimentally validated. Globally, the miRNA–pathway network demonstrates a small-world, but not scale-free, organization characterized by multiple distinct, tightly knit modules each exhibiting a high density of connections. However, unlike genetic or metabolic networks typified by only a few highly connected nodes (“hubs”), most nodes in the miRNA–pathway network are highly connected. Sequence-based computational analysis confirmed that highly-interconnected miRNAs are likely to be regulated by common pathways to target similar sets of downstream genes, suggesting a pervasive and high level of functional redundancy among coexpressed miRNAs. We conclude that gene expression signatures can be used as surrogates of miRNA activity. Our strategy facilitates the task of discovering novel miRNA–pathway connections, since gene expression data for multiple normal and disease conditions are abundantly available

Replication of Lung Cancer Susceptibility Loci at Chromosomes 15q25, 5p15, and 6p21: A Pooled Analysis From the International Lung Cancer Consortium

Background Genome-wide association studies have identified three chromosomal regions at 15q25, 5p15, and 6p21 as being associated with the risk of lung cancer. To confirm these associations in independent studies and investigate heterogeneity of these associations within specific subgroups, we conducted a coordinated genotyping study within the International Lung Cancer Consortium based on independent studies that were not included in previous genome-wide association studies. Methods Genotype data for single-nucleotide polymorphisms at chromosomes 15q25 (rs16969968, rs8034191), 5p15 (rs2736100, rs402710), and 6p21 (rs2256543, rs4324798) from 21 case-control studies for 11 645 lung cancer case patients and 14 954 control subjects, of whom 85% were white and 15% were Asian, were pooled. Associations between the variants and the risk of lung cancer were estimated by logistic regression models. All statistical tests were two-sided. Results Associations between 15q25 and the risk of lung cancer were replicated in white ever-smokers (rs16969968: odds ratio [OR] = 1.26, 95% confidence interval [CI] = 1.21 to 1.32, Ptrend = 2 × 10−26), and this association was stronger for those diagnosed at younger ages. There was no association in never-smokers or in Asians between either of the 15q25 variants and the risk of lung cancer. For the chromosome 5p15 region, we confirmed statistically significant associations in whites for both rs2736100 (OR = 1.15, 95% CI = 1.10 to 1.20, Ptrend = 1 × 10−10) and rs402710 (OR = 1.14, 95% CI = 1.09 to 1.19, Ptrend = 5 × 10−8) and identified similar associations in Asians (rs2736100: OR = 1.23, 95% CI = 1.12 to 1.35, Ptrend = 2 × 10−5; rs402710: OR = 1.15, 95% CI = 1.04 to 1.27, Ptrend = .007). The associations between the 5p15 variants and lung cancer differed by histology; odds ratios for rs2736100 were highest in adenocarcinoma and for rs402710 were highest in adenocarcinoma and squamous cell carcinomas. This pattern was observed in both ethnic groups. Neither of the two variants on chromosome 6p21 was associated with the risk of lung cancer. Conclusions In this international genetic association study of lung cancer, previous associations found in white populations were replicated and new associations were identified in Asian populations. Future genetic studies of lung cancer should include detailed stratification by histolog