Coastal Online Analysis and Synthesis Tool 2.0 (COAST)

The Coastal Online Assessment and Synthesis Tool (COAST) 3D geobrowser has been developed to integrate disparate coastal datasets from NASA and other sources into a desktop tool that provides new data visualization and analysis capabilities for coastal researchers, managers, and residents. It is built upon the widely used NASA-developed open source World Wind geobrowser from NASA Ames (Patrick Hogan et al.) .Net and C# version is used for development. It is leveraged off of World Wind community shared code samples and COAST 2.0 enhancement direction is based on Coastal science community feedback and needs assessment (GOMA). The main objective is to empower the user to bring more user-meaningful data into multi-layered, multi-temporal spatial context

Graphene oxide-based degradation of metaldehyde : effective oxidation through a modified Fenton's Process

A modified graphene oxide-based Fenton’s reaction has been investigated for the degradation of a challenging emerging contaminant which is not effectively removed in conventional water treatment. Metaldehyde, used as the challenge molecule in this study, is a common molluscicide that (like many highly soluble contaminants) has frequently breached European regulatory limits in surface waters. The new method involves graphene with higher hydrophilic characteristics (single-layer graphene oxide, SLGO) as a system that participates in a redox reaction with hydrogen peroxide and which can potentially stabilize the radical dotOH generated, which subsequently breaks down organic contaminants. The modified Fenton’s reaction has shown to be effective in degrading metaldehyde in natural waters (>92% removal), even at high contaminant concentrations (50 mg metaldehyde/L) and in the presence of high background organic matter and dissolved salts. The reaction is relatively pH insensitive. SLGO maintained its catalytic performance over 3 treatment cycles when immobilized. Its performance gradually decreased over time, reaching around 50% of starting performance on the 10th treatment cycle. X-ray photoelectron spectroscopy (XPS) analysis of modifications caused in SLGO by the oxidizing treatment indicated that the oxidation of Csingle bondC sp2 to carbonyl groups may be the cause of the decrease in performance. The proposed modified Fenton’s process has the potential to substitute traditional Fenton’s treatment although regeneration of the nanocarbon is required for its prolonged use

Nonparametric Estimation of a Multifactor Heath-Jarrow-Morton Model: An Integrated Approach

We develop a nonparametric estimator for the volatility structure of the zero coupon yield curve in the Heath, Jarrow-Morton framework. The estimator incorporates cross-sectional restrictions along the maturity dimension, and also allows for measurement errors, which arise from the estimation of the yield curve from noisy data. The estimates are implemented with daily CRSP bond data

Stability of the human faecal microbiome in a cohort of adult men

Characterizing the stability of the gut microbiome is important to exploit it as a therapeutic target and diagnostic biomarker. We metagenomically and metatranscriptomically sequenced the faecal microbiomes of 308 participants in the Health Professionals Follow-Up Study. Participants provided four stool samples—one pair collected 24–72 h apart and a second pair ~6 months later. Within-person taxonomic and functional variation was consistently lower than between-person variation over time. In contrast, metatranscriptomic profiles were comparably variable within and between subjects due to higher within-subject longitudinal variation. Metagenomic instability accounted for ~74% of corresponding metatranscriptomic instability. The rest was probably attributable to sources such as regulation. Among the pathways that were differentially regulated, most were consistently over- or under-transcribed at each time point. Together, these results suggest that a single measurement of the faecal microbiome can provide long-term information regarding organismal composition and functional potential, but repeated or short-term measures may be necessary for dynamic features identified by metatranscriptomics

Modeling vegetative vigour in grapevine: unraveling underlying mechanisms

Mechanistic modeling constitutes a powerful tool to unravel complex biological phenomena. This study describes the construction of a mechanistic, dynamic model for grapevine plant growth and canopy biomass (vigor). To parametrize and validate the model, the progeny from a cross of Ramsey (Vitis champinii) × Riparia Gloire (V. riparia) was evaluated. Plants with different vigor were grown in a greenhouse during the summer of 2014 and 2015. One set of plants was grafted with Cabernet Sauvignon. Shoot growth rate (b), leaf area (LA), dry biomass, whole plant and root specific hydraulic conductance (kH and Lpr), stomatal conductance (gs), and water potential (Ψ) were measured. Partitioning indices and specific leaf area (SLA) were calculated. The model includes an empirical fit of a purported seasonal pattern of bioactive GAs based on published seasonal evolutionary levels and reference values. The model provided a good fit of the experimental data, with R = 0.85. Simulation of single trait variations defined the individual effect of each variable on vigor determination. The model predicts, with acceptable accuracy, the vigor of a young plant through the measurement of Lpr and SLA. The model also permits further understanding of the functional traits that govern vigor, and, ultimately, could be considered useful for growers, breeders and those studying climate change.EEA MendozaFil: Hugalde, Ines Pilar. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Mendoza; Argentina. University of California at Davis. Department of Viticulture and Enology; Estados UnidosFil: Agüero, Cecilia B. University of California at Davis. Department of Viticulture and Enology; Estados UnidosFil: Barrios-Masias, Felipe H. University of California at Davis. Department of Viticulture and Enology; Estados Unidos. University of Nevada. Department of Agriculture, Veterinary and Rangeland Sciences; Estados UnidosFil: Romero, Nina. University of California at Davis. Department of Viticulture and Enology; Estados UnidosFil: Nguyen, Andy Viet. University of California at Davis. Department of Viticulture and Enology; Estados UnidosFil: Riaz, Summaira. University of California at Davis. Department of Viticulture and Enology; Estados UnidosFil: Piccoli, Patricia Noemí. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Biología Agrícola de Mendoza. Universidad Nacional de Cuyo. Facultad de Ciencias Agrarias. Instituto de Biología Agrícola de Mendoza; ArgentinaFil: McElrone, Andrew J. University of California at Davis. Department of Viticulture and Enology; Estados Unidos. US Department of Agriculture. ARS; Estados UnidosFil: Walker, M. Andrew. University of California at Davis. Department of Viticulture and Enology; Estados UnidosFil: Vila, Hernan Felix. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Mendoza; Argentin

Redox Couples of Inducible Nitric Oxide Synthase

We report direct electrochemistry of the iNOS heme domain in a DDAB film on the surface of a basal plane graphite electrode. Cyclic voltammetry reveals Fe^(III/II) and Fe^(II/I) couples at −191 and −1049 mV (vs Ag/AgCl). Imidazole and carbon monoxide in solution shift the Fe^(III/II) potential by +20 and +62 mV, while the addition of dioxygen results in large catalytic waves at the onset of Fe^(III) reduction. Voltammetry at higher scan rates (with pH variations) reveals that the Fe^(III/II) cathodic peak can be resolved into two components, which are attributable to Fe^(III/II) couples of five- and six-coordinate hemes. Digital simulation of our experimental data implicates water dissociation from the heme as a gating mechanism for ET in iNOS

Of Roots and Fruits: A Comparison of Psychedelic and Nonpsychedelic Mystical Experiences

Experiences of profound existential or spiritual significance can be triggered reliably through psychopharmacological means using psychedelic substances. However, little is known about the benefits of religious, spiritual, or mystical experiences (RSMEs) prompted by psychedelic substances, as compared with those that occur through other means. In this study, 739 self-selected participants reported the psychological impact of their RSMEs and indicated whether they were induced by a psychedelic substance. Experiences induced by psychedelic substances were rated as more intensely mystical ( d = .75, p &lt; .001), resulted in a reduced fear of death ( d = .21, p &lt; .01), increased sense of purpose ( d = .18, p &lt; .05), and increased spirituality ( d = .28, p &lt; .001) as compared with nonpsychedelically triggered RSMEs. These results remained significant in an expanded model controlling for gender, education, socioeconomic status, and religious affiliation. These findings lend support to the growing consensus that RSMEs induced with psychedelic substances are genuinely mystical and generally positive in outcome. </jats:p