2,579 research outputs found
Disentangling Vacancy Oxidation on Metallicity-Sorted Carbon Nanotubes
Pristine single-walled carbon nanotubes (SWCNTs) are rather inert to O
and N, which for low doses chemisorb only on defect sites or vacancies of
the SWCNTs at the ppm level. However, very low doping has a major effect on the
electronic properties and conductivity of the SWCNTs. Already at low O
doses (80 L), the X-ray photoelectron spectroscopy (XPS) O 1s signal becomes
saturated, indicating nearly all the SWCNT's vacancies have been oxidized. As a
result, probing vacancy oxidation on SWCNTs via XPS yields spectra with rather
low signal-to-noise ratios, even for metallicity-sorted SWCNTs. We show that,
even under these conditions, the first principles density functional theory
calculated Kohn-Sham O 1s binding energies may be used to assign the XPS O 1s
spectra for oxidized vacancies on SWCNTs into its individual components. This
allows one to determine the specific functional groups or bonding environments
measured. We find the XPS O 1s signal is mostly due to three O-containing
functional groups on SWCNT vacancies: epoxy (CO), carbonyl
(CCO), and ketene (CCO), as ordered by abundance. Upon
oxidation of nearly all the SWCNT's vacancies, the central peak's intensity for
the metallic SWCNT sample is 60\% greater than for the semiconducting SWCNT
sample. This suggests a greater abundance of O-containing defect structures on
the metallic SWCNT sample. For both metallic and semiconducting SWCNTs, we find
O does not contribute to the measured XPS O~1s spectra
Purified F-ATP synthase forms a Ca2+-dependent high-conductance channel matching the mitochondrial permeability transition pore
The molecular identity of the mitochondrial megachannel (MMC)/permeability transition pore (PTP), a key effector of cell death, remains controversial. By combining highly purified, fully active bovine F-ATP synthase with preformed liposomes we show that Ca2+ dissipates the H+ gradient generated by ATP hydrolysis. After incorporation of the same preparation into planar lipid bilayers Ca2+ elicits currents matching those of the MMC/PTP. Currents were fully reversible, were stabilized by benzodiazepine 423, a ligand of the OSCP subunit of F-ATP synthase that activates the MMC/PTP, and were inhibited by Mg2+ and adenine nucleotides, which also inhibit the PTP. Channel activity was insensitive to inhibitors of the adenine nucleotide translocase (ANT) and of the voltage-dependent anion channel (VDAC). Native gel-purified oligomers and dimers, but not monomers, gave rise to channel activity. These findings resolve the long-standing mystery of the MMC/PTP and demonstrate that Ca2+ can transform the energy-conserving F-ATP synthase into an energy-dissipating device
Citizen science can improve conservation science, natural resource management, and environmental protection
Citizen science has advanced science for hundreds of years, contributed to many peer-reviewed articles, and informed
land management decisions and policies across the United States. Over the last 10 years, citizen science
has grown immensely in the United States and many other countries. Here, we show how citizen science is a
powerful tool for tackling many of the challenges faced in the field of conservation biology. We describe the
two interwoven paths bywhich citizen science can improve conservation efforts, natural resource management,
and environmental protection. The first path includes building scientific knowledge, while the other path involves
informing policy and encouraging public action. We explore how citizen science is currently used and describe
the investments needed to create a citizen science program. We find that:
1. Citizen science already contributes substantially to many domains of science, including conservation, natural
resource, and environmental science. Citizen science informs natural resource management, environmental
protection, and policymaking and fosters public input and engagement.
2. Many types of projects can benefit fromcitizen science, but one must be careful tomatch the needs for science
and public involvement with the right type of citizen science project and the right method of public
participation.
3. Citizen science is a rigorous process of scientific discovery, indistinguishable from conventional science apart
from the participation of volunteers.When properly designed, carried out, and evaluated, citizen science can
provide sound science, efficiently generate high-quality data, and help solve problems
International Veterinary Epilepsy Task Force recommendations for a veterinary epilepsy-specific MRI protocol
Epilepsy is one of the most common chronic neurological diseases in veterinary practice. Magnetic resonance imaging (MRI) is regarded as an important diagnostic test to reach the diagnosis of idiopathic epilepsy. However, given that the diagnosis requires the exclusion of other differentials for seizures, the parameters for MRI examination should allow the detection of subtle lesions which may not be obvious with existing techniques. In addition, there are several differentials for idiopathic epilepsy in humans, for example some focal cortical dysplasias, which may only apparent with special sequences, imaging planes and/or particular techniques used in performing the MRI scan. As a result, there is a need to standardize MRI examination in veterinary patients with techniques that reliably diagnose subtle lesions, identify post-seizure changes, and which will allow for future identification of underlying causes of seizures not yet apparent in the veterinary literature.
There is a need for a standardized veterinary epilepsy-specific MRI protocol which will facilitate more detailed examination of areas susceptible to generating and perpetuating seizures, is cost efficient, simple to perform and can be adapted for both low and high field scanners. Standardisation of imaging will improve clinical communication and uniformity of case definition between research studies. A 6–7 sequence epilepsy-specific MRI protocol for veterinary patients is proposed and further advanced MR and functional imaging is reviewed
Toward integrated analysis of human impacts on forest biodiversity: lessons from Latin America.
Although sustainable forest management (SFM) has been widely adopted as a policy and management goal, high rates of forest loss and degradation are still occurring in many areas. Human activities such as logging, livestock husbandry, crop cultivation, infrastructural development, and use of fire are causing widespread loss of biodiversity, restricting progress toward SFM. In such situations, there is an urgent need for tools that can provide an integrated assessment of human impacts on forest biodiversity and that can support decision making related to forest use. This paper summarizes the experience gained by an international collaborative research effort spanning more than a decade, focusing on the tropical montane forests of Mexico and the temperate rain forests of southern South America, both of which are global conservation priorities. The lessons learned from this research are identified, specifically in relation to developing an integrated modeling framework for achieving SFM. Experience has highlighted a number of challenges that need to be overcome in such areas, including the lack of information regarding ecological processes and species characteristics and a lack of forest inventory data, which hinders model parameterization. Quantitative models are poorly developed for some ecological phenomena, such as edge effects and genetic diversity, limiting model integration. Establishment of participatory approaches to forest management is difficult, as a supportive institutional and policy environment is often lacking. However, experience to date suggests that the modeling toolkit approach suggested by Sturvetant et al. (2008) could be of value in such areas. Suggestions are made regarding desirable elements of such a toolkit to support participatory-research approaches in domains characterized by high uncertainty, including Bayesian Belief Networks, spatial multi-criteria analysis, and scenario planning.Most of the research described here was undertaken
in three projects supported by the European
Commission (INCO programme), namely SUCRE
(ERBIC18CT970146), BIOCORES (ICA4-
CT-2001-10095), and ReForLan (INCO-DEV-3 N°
032132), and three Darwin Initiative (DEFRA, UK
Government) grants to the senior author. Additional
funding was provided by a variety of sources within
the partner countries. All sources of financial
support are gratefully acknowledged
Toward integrated analysis of human impacts on forest biodiversity: lessons from Latin America.
Although sustainable forest management (SFM) has been widely adopted as a policy and management goal, high rates of forest loss and degradation are still occurring in many areas. Human activities such as logging, livestock husbandry, crop cultivation, infrastructural development, and use of fire are causing widespread loss of biodiversity, restricting progress toward SFM. In such situations, there is an urgent need for tools that can provide an integrated assessment of human impacts on forest biodiversity and that can support decision making related to forest use. This paper summarizes the experience gained by an international collaborative research effort spanning more than a decade, focusing on the tropical montane forests of Mexico and the temperate rain forests of southern South America, both of which are global conservation priorities. The lessons learned from this research are identified, specifically in relation to developing an integrated modeling framework for achieving SFM. Experience has highlighted a number of challenges that need to be overcome in such areas, including the lack of information regarding ecological processes and species characteristics and a lack of forest inventory data, which hinders model parameterization. Quantitative models are poorly developed for some ecological phenomena, such as edge effects and genetic diversity, limiting model integration. Establishment of participatory approaches to forest management is difficult, as a supportive institutional and policy environment is often lacking. However, experience to date suggests that the modeling toolkit approach suggested by Sturvetant et al. (2008) could be of value in such areas. Suggestions are made regarding desirable elements of such a toolkit to support participatory-research approaches in domains characterized by high uncertainty, including Bayesian Belief Networks, spatial multi-criteria analysis, and scenario planning.Most of the research described here was undertaken
in three projects supported by the European
Commission (INCO programme), namely SUCRE
(ERBIC18CT970146), BIOCORES (ICA4-
CT-2001-10095), and ReForLan (INCO-DEV-3 N°
032132), and three Darwin Initiative (DEFRA, UK
Government) grants to the senior author. Additional
funding was provided by a variety of sources within
the partner countries. All sources of financial
support are gratefully acknowledged
Abnormal cognition, sleep, EEG and brain metabolism in a novel knock-in Alzheimer mouse, PLB1
Peer reviewedPublisher PD
Testing gravitational-wave searches with numerical relativity waveforms: Results from the first Numerical INJection Analysis (NINJA) project
The Numerical INJection Analysis (NINJA) project is a collaborative effort
between members of the numerical relativity and gravitational-wave data
analysis communities. The purpose of NINJA is to study the sensitivity of
existing gravitational-wave search algorithms using numerically generated
waveforms and to foster closer collaboration between the numerical relativity
and data analysis communities. We describe the results of the first NINJA
analysis which focused on gravitational waveforms from binary black hole
coalescence. Ten numerical relativity groups contributed numerical data which
were used to generate a set of gravitational-wave signals. These signals were
injected into a simulated data set, designed to mimic the response of the
Initial LIGO and Virgo gravitational-wave detectors. Nine groups analysed this
data using search and parameter-estimation pipelines. Matched filter
algorithms, un-modelled-burst searches and Bayesian parameter-estimation and
model-selection algorithms were applied to the data. We report the efficiency
of these search methods in detecting the numerical waveforms and measuring
their parameters. We describe preliminary comparisons between the different
search methods and suggest improvements for future NINJA analyses.Comment: 56 pages, 25 figures; various clarifications; accepted to CQ
Multi-Grid Monte Carlo via Embedding. II. Two-Dimensional Principal Chiral Model
We carry out a high-precision simulation of the two-dimensional
principal chiral model at correlation lengths up to ,
using a multi-grid Monte Carlo (MGMC) algorithm and approximately one year of
Cray C-90 CPU time. We extrapolate the finite-volume Monte Carlo data to
infinite volume using finite-size-scaling theory, and we discuss carefully the
systematic and statistical errors in this extrapolation. We then compare the
extrapolated data to the renormalization-group predictions. The deviation from
asymptotic scaling, which is at , decreases to
at . We also analyze the dynamic critical
behavior of the MGMC algorithm using lattices up to , finding
the dynamic critical exponent
(subjective 68% confidence interval). Thus, for this asymptotically free model,
critical slowing-down is greatly reduced compared to local algorithms, but not
completely eliminated.Comment: self-unpacking archive including .tex, .sty and .ps files; 126 pages
including all figure
Identification of Giardia lamblia DHHC Proteins and the Role of Protein S-palmitoylation in the Encystation Process
Protein S-palmitoylation, a hydrophobic post-translational modification, is performed by protein acyltransferases that have a common DHHC Cys-rich domain (DHHC proteins), and provides a regulatory switch for protein membrane association. In this work, we analyzed the presence of DHHC proteins in the protozoa parasite Giardia lamblia and the function of the reversible S-palmitoylation of proteins during parasite differentiation into cyst. Two specific events were observed: encysting cells displayed a larger amount of palmitoylated proteins, and parasites treated with palmitoylation inhibitors produced a reduced number of mature cysts. With bioinformatics tools, we found nine DHHC proteins, potential protein acyltransferases, in the Giardia proteome. These proteins displayed a conserved structure when compared to different organisms and are distributed in different monophyletic clades. Although all Giardia DHHC proteins were found to be present in trophozoites and encysting cells, these proteins showed a different intracellular localization in trophozoites and seemed to be differently involved in the encystation process when they were overexpressed. dhhc transgenic parasites showed a different pattern of cyst wall protein expression and yielded different amounts of mature cysts when they were induced to encyst. Our findings disclosed some important issues regarding the role of DHHC proteins and palmitoylation during Giardia encystation.Fil: Merino, Maria Cecilia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigación Médica Mercedes y Martín Ferreyra. Universidad Nacional de Córdoba. Instituto de Investigación Médica Mercedes y Martín Ferreyra; ArgentinaFil: Zamponi, Nahuel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigación Médica Mercedes y Martín Ferreyra. Universidad Nacional de Córdoba. Instituto de Investigación Médica Mercedes y Martín Ferreyra; ArgentinaFil: Vranych, Cecilia Verónica. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigación Médica Mercedes y Martín Ferreyra. Universidad Nacional de Córdoba. Instituto de Investigación Médica Mercedes y Martín Ferreyra; ArgentinaFil: Touz, Maria Carolina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigación Médica Mercedes y Martín Ferreyra. Universidad Nacional de Córdoba. Instituto de Investigación Médica Mercedes y Martín Ferreyra; ArgentinaFil: Ropolo, Andrea Silvana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigación Médica Mercedes y Martín Ferreyra. Universidad Nacional de Córdoba. Instituto de Investigación Médica Mercedes y Martín Ferreyra; Argentin
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