138 research outputs found
Molecular and Proteolytic Profiles of Trypanosoma cruzi Sylvatic Isolates from Rio de Janeiro-Brazil
High-resolution genetic map and QTL analysis of growth-related traits of Hevea brasiliensis cultivated under suboptimal temperature and humidity conditions
Rubber tree (Hevea brasiliensis) cultivation is the main source of natural rubber worldwide and has been extended to areas with suboptimal climates and lengthy drought periods; this transition affects growth and latex production. High-density genetic maps with reliable markers support precise mapping of quantitative trait loci (QTL), which can help reveal the complex genome of the species, provide tools to enhance molecular breeding, and shorten the breeding cycle. In this study, QTL mapping of the stem diameter, tree height, and number of whorls was performed for a full-sibling population derived from a GT1 and RRIM701 cross. A total of 225 simple sequence repeats (SSRs) and 186 single-nucleotide polymorphism (SNP) markers were used to construct a base map with 18 linkage groups and to anchor 671 SNPs from genotyping by sequencing (GBS) to produce a very dense linkage map with small intervals between loci. The final map was composed of 1,079 markers, spanned 3,779.7 cM with an average marker density of 3.5 cM, and showed collinearity between markers from previous studies. Significant variation in phenotypic characteristics was found over a 59-month evaluation period with a total of 38 QTLs being identified through a composite interval mapping method. Linkage group 4 showed the greatest number of QTLs (7), with phenotypic explained values varying from 7.67 to 14.07%. Additionally, we estimated segregation patterns, dominance, and additive effects for each QTL. A total of 53 significant effects for stem diameter were observed, and these effects were mostly related to additivity in the GT1 clone. Associating accurate genome assemblies and genetic maps represents a promising strategy for identifying the genetic basis of phenotypic traits in rubber trees. Then, further research can benefit from the QTLs identified herein, providing a better understanding of the key determinant genes associated with growth of Hevea brasiliensis under limiting water conditions
Linkage disequilibrium and population structure in wild and cultivated populations of rubber tree (Hevea brasiliensis).
Abstract: Among rubber tree species, which belong to the Hevea genus of the Euphorbiaceae family, Hevea brasiliensis (Willd. ex Adr.de Juss.) Muell. Arg. is the main commercial source of natural rubber production worldwide. Knowledge of the population structure and linkage disequilibrium (LD) of this species is essential for the efficient organization and exploitation of genetic resources. Here, we obtained single-nucleotide polymorphisms (SNPs) using a genotyping-by-sequencing (GBS) approach and then employed the SNPs for the following objectives: (i) to identify the positions of SNPs on a genetic map of a segregating mapping population, (ii) to evaluate the population structure of a germplasm collection, and (iii) to detect patterns of LD decay among chromosomes for future genetic association studies in rubber tree. A total of 626 genotypes, including both germplasm accessions (368) and individuals from a genetic mapping population (254), were genotyped. A total of 77,660 and 21,283 SNPs were detected by GBS in the germplasm and mapping populations, respectively. The mapping population, which was previously mapped, was constructed with 1,062 markers, among which only 576 SNPs came from GBS, reducing the average interval between two adjacent markers to 4.4 cM. SNPs from GBS genotyping were used for the analysis of genetic structure and LD estimation in the germplasm accessions. Two groups, which largely corresponded to the cultivated and wild populations, were detected using STRUCTURE and via principal coordinate analysis. LD analysis, also using the mapped SNPs, revealed that non-random associations varied along chromosomes, with regions of high LD interspersed with regions of low LD. Considering the length of the genetic map (4,693 cM) and the mean LD (0.49 for cultivated and 0.02 for wild populations), a large number of evenly spaced SNPs would be needed to perform genome-wide association studies in rubber tree, and the wilder the genotypes used, the more difficult the mapping saturation
Effect of LPS on the Viability and Proliferation of Human Oral and Esophageal Cancer Cell Lines
Investigation of the splitting of quark and gluon jets
The splitting processes in identified quark and gluon jets are investigated using longitudinal and transverse observables. The jets are selected from symmetric three-jet events measured in Z decays with the Delphi detector in 1991-1994. Gluon jets are identified using heavy quark anti-tagging. Scaling violations in identified gluon jets are observed for the first time. The scale energy dependence of the gluon fragmentation function is found to be about two times larger than for the corresponding quark jets, consistent with the QCD expectation TeX . The primary splitting of gluons and quarks into subjets agrees with fragmentation models and, for specific regions of the jet resolution TeX , with NLLA calculations. The maximum of the ratio of the primary subjet splittings in quark and gluon jets is TeX . Due to non-perturbative effects, the data are below the expectation at small TeX . The transition from the perturbative to the non-perturbative domain appears at smaller TeX for quark jets than for gluon jets. Combined with the observed behaviour of the higher rank splittings, this explains the relatively small multiplicity ratio between gluon and quark jets
Measurements of the leptonic branching fractions of the
Data collected with the DELPHI detector from 1993 to 1995 combined with previous DELPHI results for data from 1991 and 1992 yield the branching fractions B({\tau \rightarrow \mbox{\rm e} \nu \bar{\nu}}) = (17.877 \pm 0.109_{stat} \pm 0.110_{sys} )\% and
A large topographic feature on the surface of the trans-Neptunian object (307261) 2002 MS measured from stellar occultations
This work aims at constraining the size, shape, and geometric albedo of the
dwarf planet candidate 2002 MS4 through the analysis of nine stellar
occultation events. Using multichord detection, we also studied the object's
topography by analyzing the obtained limb and the residuals between observed
chords and the best-fitted ellipse. We predicted and organized the
observational campaigns of nine stellar occultations by 2002 MS4 between 2019
and 2022, resulting in two single-chord events, four double-chord detections,
and three events with three to up to sixty-one positive chords. Using 13
selected chords from the 8 August 2020 event, we determined the global
elliptical limb of 2002 MS4. The best-fitted ellipse, combined with the
object's rotational information from the literature, constrains the object's
size, shape, and albedo. Additionally, we developed a new method to
characterize topography features on the object's limb. The global limb has a
semi-major axis of 412 10 km, a semi-minor axis of 385 17 km, and
the position angle of the minor axis is 121 16. From
this instantaneous limb, we obtained 2002 MS4's geometric albedo and the
projected area-equivalent diameter. Significant deviations from the fitted
ellipse in the northernmost limb are detected from multiple sites highlighting
three distinct topographic features: one 11 km depth depression followed by a
25 km height elevation next to a crater-like depression with an
extension of 322 39 km and 45.1 1.5 km deep. Our results present an
object that is 138 km smaller in diameter than derived from thermal
data, possibly indicating the presence of a so-far unknown satellite. However,
within the error bars, the geometric albedo in the V-band agrees with the
results published in the literature, even with the radiometric-derived albedo
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