Spatial and temporal dynamics of the abundance of crustose calcareous algae on the southernmost coral reefs of the western Atlantic (Abrolhos Bank, Brazil)

Crustose calcareous algae (CCA) constitute one of the main reef builders on the Abrolhos Bank, Brazil. Once CCA taxonomy is locally understood, differences in growth-forms may be useful for the delimitation of taxa using characteristics such as the presence or absence of surface protuberances. Here, growth-forms were used to identify and quantify the most common CCA taxa on the shallow reefs (3-10 m) of the Abrolhos Bank to determine possible changes in the CCA community over a period of 10 years, and the ecological significance of CCA to local reefs was interpreted. The CCA assemblages were surveyed from 2006-2015 by using fixed photoquadrats at four sites in the inner (10-20 km from the mainland) and mid-shelf reefs (40-75 km from the mainland). The five most common CCA taxa were Pneophyllum conicum, the Lithophyllum kaiserii / Lithophyllum sp. complex, Melyvonnea erubescens, the Hydrolithon boergesenii / Porolithon onkodes complex and Peyssonelia sp. The overall mean CCA cover on the reefs was 20%. A comparison with a previous monitoring study in the same region indicated that the CCA cover nearly doubled from 2003-2008 to 2006-2015. This study reveals that the coral-killing species P. conicum dominated CCA flora on the shallow Abrolhos reefs in the last decade, and the local specific abundance of CCA slightly fluctuated over time and was species-and site-specific. The information obtained in this study contributes to the understanding of the ecology of the key calcifying components of the Abrolhos reefs and provides a useful baseline for exploring the responses of CCA to future environmental changes.PELDMudancas Climaticas scientific programmes of the Brazilian National Science Agency (CNPq)Brazilian IODP Program (CAPES/MEC)P&D Program ANP/BrasoilFAPERJDiretoria Pesquisa Cient, Inst Pesquisas, Jardim Bot Rio De Janeiro, Rua Pacheco Leao 915, BR-22460030 Rio De Janeiro, RJ, BrazilUniv Fed Rio de Janeiro, Inst Biol, BR-21941599 Rio De Janeiro, RJ, BrazilUniv Fed Espirito Santo, Dept Oceanog, Ave Fernando Ferrari 514, BR-29090600 Vitoria, ES, BrazilUniv Fed Sao Paulo, Inst Mar, Campus Baixada Santista, BR-11030400 Santos, SP, BrazilUniv Fed Paraiba, Ctr Ciencias Aplicadas & Educ, Campus 4 Litoral Norte, BR-58297000 Rio Tinto, PB, BrazilUniv Fed Sao Paulo, Inst Mar, Campus Baixada Santista, BR-11030400 Santos, SP, BrazilANP/Brasoil: 48610.011015/2014-55Web of Scienc

Applying a Multi-Method Framework to Analyze the Multispectral Acoustic Response of the Seafloor

Improvements to acoustic seafloor mapping systems have motivated novel marine geological and benthic biological research. Multibeam echosounders (MBES) have become a mainstream tool for acoustic remote sensing of the seabed. Recently, “multispectral” MBES backscatter, which is acquired at multiple operating frequencies, has been developed to characterize the seabed in greater detail, yet methods for the use of these data are still being explored. Here, we evaluate the potential for seabed discrimination using multispectral backscatter data within a multi-method framework. We present a novel MBES dataset acquired using four operating frequencies (170, 280, 400, and 700 kHz) near the Doce River mouth, situated on the eastern Brazilian continental shelf. Image-based and angular range analysis methods were applied to characterize the multifrequency response of the seabed. The large amount of information resulting from these methods complicates a manual seabed segmentation solution. The data were therefore summarized using a combination of dimensionality reduction and density-based clustering, enabling hierarchical spatial classification of the seabed with sparse ground-truth. This approach provided an effective solution to synthesizing these data spatially to identify two distinct acoustic seabed classes, with four subclasses within one of the broader classes, which corresponded closely with seafloor sediment samples collected at the site. The multispectral backscatter data also provided information in likely, unknown, sub-surface substrate differences at this site. The study demonstrates that the adoption of a multi-method framework combining image-based and angular range analysis methods with multispectral MBES data can offer significant advantages for seafloor characterization and mapping

Shelf morphology as an indicator of sedimentary regimes: a synthesis from a mixed siliciclastic-carbonate shelf on the eastern Brazilian margin

Modern shelf morphology is the result of the interplay between short and long term sedimentary processes. The relation between rates of sediment supply/carbonate growth and accommodation space creation will not only control coastal transgression and regression, but will also define the shelf sedimentary regimes acting to shape the seabed. Herein, shelf morphology and sedimentology are investigated in order to discuss how these characteristics can be representative of distinct sedimentary regimes. The study area is the eastern Brazilian shelf where coastal transgression and regression coexist with the most important coral reef system of the South Atlantic. A compilation of existing published and unpublished data was carried out in order to produce morphological and faciological maps and compare the mapped features with high-resolution seismic and sonographic data. The results show three major regions or morphological compartments: Abrolhos Shelf, Doce River Shelf and the Paleovalleys Shelf. In terms of shelf sedimentary domain, rhodolith beds predominate over the outer shelf along the entire area, coralline reefs are present along the northern Abrolhos inner shelf and a significant terrigenous mud deposit is observed associated to the Doce River adjacent inner shelf beds. The rest of the shelf is composed by bioclastic or terrigenous mud sand and gravel. Terrigenous sedimentation is always restricted to the shoreface or inner shelf shallower areas and carbonate sands and gravels are predominant elsewhere. The Abrolhos shelf shows two distinct sectors; the northern area is a typical mixed sediment environment that has a supply regime along the coast/shoreface, mainly due to longshore transport and a carbonate regime along the inner and outer shelf. The southern shelf morphology and sedimentation are controlled by the antecedent topography and is typically a accommodation regime shelf with associated rhodolith beds. The Doce river shelf is a supply regime environment with the formation of a 5 to 8m thick regressive deposit with downlapping clinoforms. Southward from the Doce river shelf, a significant shift in sedimentary regime is observed as the morphology becomes very irregular with associated hardbottoms and unfilled paleovalleys. This sector of the shelf (Paleovalley shelf) is characterized by an accommodation regime. The interpretation shows that the entire study area can be defined as a mixed sedimentation shelf, showing supply and accommodation regimes. Shelf morphology worked as an indicator of these changes. Carbonate/terrigenous deposition during a highstand/regressive phase coeval along the eastern Brazilian shelf, either laterally and across shelf. This lateral/along coast variation in sediment supply and carbonate production leads to distinct lateral facies and geometry. These spatial changes in morphology and facies, with coexistence of carbonate and siliciclastic sedimentation, are very important for the correlation and interpretation of the geological record, especially stratigraphic surfaces and sequence units

Large emissions from floodplain trees close the Amazon methane budget

Wetlands are the largest global source of atmospheric methane (CH4), a potent greenhouse gas. However, methane emission inventories from the Amazon floodplain, the largest natural geographic source of CH4 in the tropics, consistently underestimate the atmospheric burden of CH4 determined via remote sensing and inversion modelling, pointing to a major gap in our understanding of the contribution of these ecosystems to CH4 emissions. Here we report CH4 fluxes from the stems of 2,357 individual Amazonian floodplain trees from 13 locations across the central Amazon basin. We find that escape of soil gas through wetland trees is the dominant source of regional CH4 emissions. Methane fluxes from Amazon tree stems were up to 200 times larger than emissions reported for temperate wet forests6 and tropical peat swamp forests, representing the largest non-ebullitive wetland fluxes observed. Emissions from trees had an average stable carbon isotope value (δ13C) of −66.2 ± 6.4 per mil, consistent with a soil biogenic origin. We estimate that floodplain trees emit 15.1 ± 1.8 to 21.2 ± 2.5 teragrams of CH4 a year, in addition to the 20.5 ± 5.3 teragrams a year emitted regionally from other sources. Furthermore, we provide a ‘top-down’ regional estimate of CH4 emissions of 42.7 ± 5.6 teragrams of CH4 a year for the Amazon basin, based on regular vertical lower-troposphere CH4 profiles covering the period 2010–2013. We find close agreement between our ‘top-down’ and combined ‘bottom-up’ estimates, indicating that large CH4 emissions from trees adapted to permanent or seasonal inundation can account for the emission source that is required to close the Amazon CH4 budget. Our findings demonstrate the importance of tree stem surfaces in mediating approximately half of all wetland CH4 emissions in the Amazon floodplain, a region that represents up to one-third of the global wetland CH4 source when trees are combined with other emission sources

Telemedicina: desenvolvimento de um sistema para atendimento à distância de pacientes com doença renal crônica pré-dialítica

Introduction: The focus in the treatment of CKD is to prevent its progression through optimal medical control. The large number of patients with CKD has pressed nephrologists to assess more patients into ever-smaller periods of consultation. The use of light technologies as a promising form of health care. The internet offers the opportunity to manipulate the doctor in his professional contact with the user. Objective:To develop a web system to attend the patients with CKD not on dialysis and clinically stable stages at distance. Methods: Developed a system using the Java language, MySQL database and PrimeFaces framework; available on a Glassfish application server. Results: The initial access is performed by the nephrologist, which registers the patients with their personal information and access data. After being registered, the patient (or family doctor) can enter the data of your query and these will be following, passed on to the nephrologist for evaluation. The form with the data of interest is pre-determined, but there is possibility to add free-form information. The system enables, in addition, there is exchange of messages between doctors and patients. In addition, users receive messages via e-mail alerting them of their duties. Confidentiality is guaranteed by individual passwords for doctors and patients. Conclusion:This tool will enable to increase the coverage area of nephrologists, reduce costs and bring the patient to the primary care physician, using the Family Health Program as an interface between the patient and the nephrology secondary care.Introdução: O foco no tratamento da doença renal crônica (DRC) é evitar a sua progressão com o uso do controle clínico otimizado. O uso de tecnologias leves apresenta-se como forma promissora de cuidado em saúde. A internet oferece a oportunidade de instrumentalizar o médico em seu contato profissional com o usuário. Objetivo: Desenvolver um sistema web para o atendimento a distância de pacientes com DRC nos estágios não dialíticos e clinicamente estáveis. Métodos: Desenvolvido um sistema utilizando a linguagem Java, banco de dados MySQL e framework PrimeFaces; disponibilizado em um servidor de aplicações Glassfish. Resultados: O acesso inicial é realizado pelo nefrologista, que cadastra os pacientes com suas informações pessoais e dados de acesso. Após ser cadastrado, o paciente (ou médico de família) pode inserir os dados de sua consulta e estes serão, na sequência, repassados ao nefrologista para avaliação. O formulário com os dados de interesse é pré-determinado, mas ainda há possibilidade de acrescentar informações de forma livre. O sistema possibilita, adicionalmente, que haja troca de mensagens entre os médicos e os pacientes. Além disso, os usuários recebem mensagens via e-mail alertando-os de suas tarefas. O sigilo é garantido por senhas individuais para médicos e pacientes. Conclusão: Essa ferramenta possibilitará aumentar a área de abrangência dos nefrologistas, diminuir os custos e aproximar o paciente ao seu médico da atenção básica, utilizando o Programa de Saúde de Família como interface entre o paciente e a atenção secundária nefrológica

An extensive reef system at the Amazon River mouth

Large rivers create major gaps in reef distribution along tropical shelves. The Amazon River represents 20% of the global riverine discharge to the ocean, generating up to a 1.3 x 10(6)-km(2) plume, and extensive muddy bottoms in the equatorial margin of South America. As a result, a wide area of the tropical North Atlantic is heavily affected in terms of salinity, pH, light penetration, and sedimentation. Such unfavorable conditions were thought to imprint a major gap in Western Atlantic reefs. We present an extensive carbonate system off the Amazon mouth, underneath the river plume. Significant carbonate sedimentation occurred during lowstand sea level, and still occurs in the outer shelf, resulting in complex hard-bottom topography. A permanent near-bottom wedge of ocean water, together with the seasonal nature of the plume's eastward retroflection, conditions the existence of this extensive (similar to 9500 km(2)) hard-bottom mosaic. The Amazon reefs transition from accretive to erosional structures and encompass extensive rhodolith beds. Carbonate structures function as a connectivity corridor for wide depth-ranging reef-associated species, being heavily colonized by large sponges and other structure-forming filter feeders that dwell under low light and high levels of particulates. The oxycline between the plume and subplume is associated with chemoautotrophic and anaerobic microbial metabolisms. The system described here provides several insights about the responses of tropical reefs to suboptimal and marginal reef-building conditions, which are accelerating worldwide due to global changes.Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq)Coordenadoria de Aperfeicoamento de Pessoal de Nivel Superior (CAPES)Fundacao Carlos Chagas Filho de Amparo a Pesquisa do Estado do Rio de Janeiro (FAPERS)Fundacao de Amparo a Pesquisa do Estado de Sao Paulo (FAPESP)BrasoilMCTIBrazilian NavyU.S. NSFGordon and Betty Moore Foundation (GBMF)Univ Fed Rio de Janeiro UFRJ, Inst Biol, BR-21941599 Rio De Janeiro, RJ, BrazilUniv Fed Rio de Janeiro, COPPE, Inst Alberto Luiz Coimbra Posgrad & Pesquisa Engn, Lab Sistemas Avancados Gestao Prod, BR-21941972 Rio de Janeiro, RJ, BrazilInst Pesquisas Jardim Bot Rio de Janeiro, BR-22460030 Rio De Janeiro, RJ, BrazilUniv Sao Paulo, Inst Oceanog, BR-05508120 Sao Paulo, SP, BrazilUniv Fed Espirito Santo, Dept Oceanog, BR-29199970 Vitoria, ES, BrazilUniv Estadual Norte Fluminense, Lab Ciencias Ambientais, Ctr Biociencias & Biotecnol, BR-28013602 Campos Dos Goytacazes, RJ, BrazilUniv Fed Fluminense, Inst Geociencias, BR-24210346 Niteroi, RJ, BrazilUniv Fed Fluminense, Inst Biol, BR-24210130 Niteroi, RJ, BrazilUniv Fed Rio de Janeiro, Museo Nacl, BR-20940040 Rio De Janeiro, RJ, BrazilFed Univ Para, Inst Estudos Costeiros, BR-68600000 Braganca, PA, BrazilUniv Fed Sao Paulo, Dept Ciencias Mar, BR-11070100 Santos, SP, BrazilUniv Fed Pernambuco, Dept Oceanog, BR-50670901 Recife, PE, BrazilUniv Georgia, Dept Marine Sci, Athens, GA 30602 USAUniv Fed Paraiba, BR-58297000 Rio Tinto, PB, BrazilUniv Estadual Santa Cruz, Dept Ciencias Biol, BR-45650000 Ilheus, BA, BrazilUniv Fed Sao Paulo, Dept Ciencias Mar, BR-11070100 Santos, SP, BrazilU.S. NSF: OCE-0934095GBMF: 2293GBMF: 2928Web of Scienc

Long-term effects of competition and environmental drivers on the growth of the endangered coral Mussismilia braziliensis (Verril, 1867)

Most coral reefs have recently experienced acute changes in benthic community structure, generally involving dominance shifts from slow-growing hard corals to fast-growing benthic invertebrates and fleshy photosynthesizers. Besides overfishing, increased nutrification and sedimentation are important drivers of this process, which is well documented at landscape scales in the Caribbean and in the Indo-Pacific. However, small-scale processes that occur at the level of individual organisms remain poorly explored. In addition, the generality of coral reef decline models still needs to be verified on the vast realm of turbid-zone reefs. Here, we documented the outcome of interactions between an endangered Brazilian-endemic coral (Mussismilia braziliensis) and its most abundant contacting organisms (turf, cyanobacteria, corals, crustose coralline algae and foliose macroalgae). Our study was based on a long (2006–2016) series of high resolution data (fixed photoquadrats) acquired along a cross-shelf gradient that includes coastal unprotected reefs and offshore protected sites. The study region (Abrolhos Bank) comprises the largest and richest coralline complex in the South Atlantic, and a foremost example of a turbid-zone reef system with low diversity and expressive coral cover. Coral growth was significantly different between reefs. Coral-algae contacts predominated inshore, while cyanobacteria and turf contacts dominated offshore. An overall trend in positive coral growth was detected from 2009 onward in the inshore reef, whereas retraction in live coral tissue was observed offshore during this period. Turbidity (+) and cyanobacteria (−) were the best predictors of coral growth. Complimentary incubation experiments, in which treatments of Symbiodinium spp. from M. braziliensis colonies were subjected to cyanobacterial exudates, showed a negative effect of the exudate on the symbionts, demonstrating that cyanobacteria play an important role in coral tissue necrosis. Negative effects of cyanobacteria on living coral tissue may remain undetected from percent cover estimates gathered at larger spatial scales, as these ephemeral organisms tend to be rapidly replaced by longer-living macroalgae, or complex turf-like consortia. The cross-shelf trend of decreasing turbidity and macroalgae abundance suggests either a direct positive effect of turbidity on coral growth, or an indirect effect related to the higher inshore cover of foliose macroalgae, constraining cyanobacterial abundance. It is unclear whether the higher inshore macroalgal abundance (10–20% of reef cover) is a stable phase related to a long-standing high turbidity background, or a contemporary response to anthropogenic stress. Our results challenge the idea that high macroalgal cover is always associated with compromised coral health, as the baselines for turbid zone reefs may derive sharply from those of coral-dominated reefs that dwell under oligotrophic conditions

Molecular mechanisms of toxicity of silver nanoparticles in zebrafish embryos.

addresses: Biosciences, College of Life and Environmental Sciences, Geoffrey Pope Building, University of Exeter, Stocker Road, Exeter, EX4 4QD, UK. [email protected]: Journal Article; Research Support, Non-U.S. Gov'tThis is an open access article that is freely available in ORE or from the publisher's web site. http://pubs.acs.org/doi/abs/10.1021/es401758d. Please cite the published version© 2013 American Chemical SocietySupporting Information: Further details on the methodology and results for the characterization of the silver particles used for the exposures, mortality curves, sequencing analysis, and a number of supporting figures and tables. This material is available free of charge via the Internet at http://pubs.acs.org.Silver nanoparticles cause toxicity in exposed organisms and are an environmental health concern. The mechanisms of silver nanoparticle toxicity, however, remain unclear. We examined the effects of exposure to silver in nano-, bulk-, and ionic forms on zebrafish embryos (Danio rerio) using a Next Generation Sequencing approach in an Illumina platform (High-Throughput SuperSAGE). Significant alterations in gene expression were found for all treatments and many of the gene pathways affected, most notably those associated with oxidative phosphorylation and protein synthesis, overlapped strongly between the three treatments indicating similar mechanisms of toxicity for the three forms of silver studied. Changes in oxidative phosphorylation indicated a down-regulation of this pathway at 24 h of exposure, but with a recovery at 48 h. This finding was consistent with a dose-dependent decrease in oxygen consumption at 24 h, but not at 48 h, following exposure to silver ions. Overall, our data provide support for the hypothesis that the toxicity caused by silver nanoparticles is principally associated with bioavailable silver ions in exposed zebrafish embryos. These findings are important in the evaluation of the risk that silver particles may pose to exposed vertebrate organisms.Natural Environment Research Council (NERC)NERC Biomolecular Analysis FacilityUK Environment AgencySystems Biology Seed fund, University of Exete