Reassessment of the invasion history of two species of Cakile (Brassicaceae) in Australia

In this paper we revisit the invasion history of two species of Cakile in Australia. Cakile edentula subsp. edentula arrived in the mid 19th Century and spread into coastal strandline habitat from the southeast towards the west and to the north; Cakile maritima arrived in the late 19th Century and has replaced Cakile edentula over much of the range. While Cakile edentula is morphologically quite uniform, the great variation within Cakile maritima has confused field ecologists. Using herbarium records we update previous accounts of the spread of the species and report on field surveys that determined their current geographic overlap in Tasmania and in northern New South Wales/southern Queensland. We examine regional morphological variation within Cakile maritima using the national herbaria collections and variation within new population samples. We support previous interpretations that Cakile maritima has been introduced on more than one occasion from morphologically distinct races, resulting in regional variation within Australia and high variability within populations in the south-east. Western Australian populations appear distinct and probably did not initiate those in the east; we consider that eastern populations are likely to be a mix of Cakile maritima subsp. maritima from the Mediterranean and Cakile maritima subsp. integrifolia from Atlantic Europe. Although introgression from Cakile edentula into Cakile maritima cannot be discounted from our results, it is not required to explain the levels of variation in the latter species observed in Australia. Cakile maritima continues to spread southwards in Tasmania and northwards in NSW; in Queenland, a recent occurrence has proliferated in Moreton Bay, spreading slowly to the north but not appreciably southwards

Incorporating collateral information using an adaptive management framework for the regulation of transgenic crops:

"A lack of data often makes biological management decisions difficult and has been an area of contention in the debate over the approval of transgenic crops. Our knowledge of agricultural and natural systems is limited and our ability to gain additional information, quickly and effectively, is often handicapped by statistical complexity. To adequately cope with this requires new approaches and models that integrate decision-making and management. This paper describes one possible approach to the integration of decision-making and management, which may have application for the regulatory approval of transgenic crops. In many situations countries wishing to approve transgenic crops will have limited data on the environmental performance of the crop. The approach outlined in this paper looks at how related information, possibly collected from other countries, might be used to help inform decisions about the approval of transgenic crops. This is done within an integrated decision-making and management framework." Authors' AbstractTransgenic plants, Collateral data, Bayesian theory, Inference,

Generalized Height-diameter Models for Acacia Mangium Willd. Plantations in South Sumatra

The aim of this study was to develop a generalized height-diameter model for predicting tree height of Acacia mangium plantations in South Sumatra that could account for the variability of site and stand conditions. Six commonly used non-linear growth functions (i.e. Gompertz, Chapman-Richards, Lundqvist-Korf, Weibull, modified logistic, and exponential) were selected as candidate base models and were fitted to individual tree's height-diameter data of A.mangium plantations. A total of 13,302 trees collected from permanent sample plots with various spacing , stand age, and site quality were available for this study. The data were split into two sets: one set being the majority (75%) was used to estimate model parameters and the remaining data set (25%) was used to validate the models. The results showed that the six base models produced almost identical fits with a relatively high root mean squared error (± 3.4 m) and a relatively low proportion of the total variation in obser ved tree height (52.5 - 53.4%). The Lundqvist-Korf (LK) model performed slightly better than the other models based on the goodness of fit as well as bias and standard errors of the predictions. This LK model can be fitted easily and provided more satisfactory fit when additional variables were included into the model, hence was selected as the base model. Introducing stand variables into the selected base model resulted in a significant improvement of the accuracy for predicting heights. The root mean squared error decreased by the value between 0.5564 and 1.4252 m and the proportion of variation explained by the model increased by the value between 13.88 and 33.21%. The best improvement based on fit and model validation was achieved by the generalized height-diameter model with inclusion of stand age and site index

Disease cycle of Austropuccinia psidii on Eucalyptus globulus and Eucalyptus obliqua leaves of different rust response phenotypes

Myrtle rust poses a significant biosecurity threat to Australia with potential for long-term damaging impacts on nativeflora and plant industries. This study describes the disease cycle of Austropuccinia psidii, the myrtle rust pathogen, in Eucalyptus globulus and Eucalyptus obliqua, two commercially and ecologically important species from different sub-genera of Eucalyptus. Ontogeny and morphology of infection structures of A. psidii on plants of both Eucalyptus species with different rust response phenotypes, i.e. completely resistant, hypersensitive and highly susceptible, were investigated. Plants were inoculated with single-uredinium-derived urediniospores and examined by scanning electron microscopy. No differences between rust response phenotypes were observed in germination of urediniospores, formation of appressoria or length of germ tubes. The growth of germ tubes had no affinity towards stomata of either species. Histological observations indicated direct penetration by infection pegs through the leaf cuticle and no penetration beyond the epidermis on rust-resistant E. obliqua.Eucalyptus obliqua plants that were identified as susceptible to A. psidii at 3- and 6-months-old showed no disease when reinoculated with A. psidii at 12-months-old; this indicated possible early acquisition of adult plant resistance to A. psidii in this species. In the susceptible phenotype of E. globules rust inoculation led to rapid colonization of leaf parenchyma cells with the disease cycle completed within 10 days. These findings provide valuable insights into host–pathogen interactions in the Eucalyptus–A. psidii pathosystem,which might be useful for the development of effective rust control strategies across Eucalyptus subgenera

Population diversity of "Doryanthes excelsa" (Doryanthaceae) in eastern Australia

The population diversity of Doranthes excelsa Corrêa (Doryanthaceae) was measured from nine distinct geographic populations across eastern Australia, using random amplified polymorphic DNA (RAPD) markers. An UPGMA dendrogram of individuals was derived from squared Euclidian distances based on the Dice (1945) algorithm. Three clusters corresponding to populations at Somersby, Newfoundland and Kremnos Creek populations were found to be distinct from the remainder of the sampled individuals. A ΦST value of 0.443 indicated that a significant diversity between geographic populations existed; this appeared to be a product of geographical distance and isolation between some of the populations. (PCR = Polymerase Chain Reaction; RAPD = Random Amplified Polymorphic DNA) The results suggest that there is lesser gene flow between the‘northern’ populations (Kremnos Creek and Newfoundland) when compared to the ‘southern’ populations and that they have a significant level of genetic isolation. The two ‘northern’ populations should therefore be regarded as being of considerable value for conservation authorities and the commercial breeding sector and should be given priority for conservation. The plants there appear to exhibit a smaller phenotype but confirming this requires further quantification

Modelling the Cost Effectiveness of Interventions for Osteoporosis: Issues to Consider

Expenditure on treating osteoporotic fractures and on preventative intervention is considerable and is likely to rise in forthcoming years due to the association between fracture risk and age. With funders such as the National Institute for Health and Care Excellence and the Pharmaceutical Benefits Advisory Committee explicitly considering cost-effectiveness analyses within the process of producing guidance, it is imperative that economic models are as robust as possible. This article details issues that need to be considered specifically related to health technology assessments of interventions for osteoporosis, and highlights limitations within the current evidence base. A likely direction of impact on cost effectiveness of addressing the key issues has been included alongside a tentative categorization of the level of these impacts. It is likely that cost-effectiveness ratios presented in previous models that did not address the identified issues were favourable to interventions

Proceedings of Patient Reported Outcome Measure’s (PROMs) Conference Oxford 2017: Advances in Patient Reported Outcomes Research

A33-Effects of Out-of-Pocket (OOP) Payments and Financial Distress on Quality of Life (QoL) of People with Parkinson’s (PwP) and their Carer

Biallelic variants in PCDHGC4 cause a novel neurodevelopmental syndrome with progressive microcephaly, seizures, and joint anomalies.

PURPOSE: We aimed to define a novel autosomal recessive neurodevelopmental disorder, characterize its clinical features, and identify the underlying genetic cause for this condition. METHODS: We performed a detailed clinical characterization of 19 individuals from nine unrelated, consanguineous families with a neurodevelopmental disorder. We used genome/exome sequencing approaches, linkage and cosegregation analyses to identify disease-causing variants, and we performed three-dimensional molecular in silico analysis to predict causality of variants where applicable. RESULTS: In all affected individuals who presented with a neurodevelopmental syndrome with progressive microcephaly, seizures, and intellectual disability we identified biallelic disease-causing variants in Protocadherin-gamma-C4 (PCDHGC4). Five variants were predicted to induce premature protein truncation leading to a loss of PCDHGC4 function. The three detected missense variants were located in extracellular cadherin (EC) domains EC5 and EC6 of PCDHGC4, and in silico analysis of the affected residues showed that two of these substitutions were predicted to influence the Ca2+-binding affinity, which is essential for multimerization of the protein, whereas the third missense variant directly influenced the cis-dimerization interface of PCDHGC4. CONCLUSION: We show that biallelic variants in PCDHGC4 are causing a novel autosomal recessive neurodevelopmental disorder and link PCDHGC4 as a member of the clustered PCDH family to a Mendelian disorder in humans

Implications of TP53 allelic state for genome stability, clinical presentation and outcomes in myelodysplastic syndromes

Tumor protein p53 (TP53) is the most frequently mutated gene in cancer1,2. In patients with myelodysplastic syndromes (MDS), TP53 mutations are associated with high-risk disease3,4, rapid transformation to acute myeloid leukemia (AML)5, resistance to conventional therapies6–8 and dismal outcomes9. Consistent with the tumor-suppressive role of TP53, patients harbor both mono- and biallelic mutations10. However, the biological and clinical implications of TP53 allelic state have not been fully investigated in MDS or any other cancer type. We analyzed 3,324 patients with MDS for TP53 mutations and allelic imbalances and delineated two subsets of patients with distinct phenotypes and outcomes. One-third of TP53-mutated patients had monoallelic mutations whereas two-thirds had multiple hits (multi-hit) consistent with biallelic targeting. Established associations with complex karyotype, few co-occurring mutations, high-risk presentation and poor outcomes were specific to multi-hit patients only. TP53 multi-hit state predicted risk of death and leukemic transformation independently of the Revised International Prognostic Scoring System (IPSS-R)11. Surprisingly, monoallelic patients did not differ from TP53 wild-type patients in outcomes and response to therapy. This study shows that consideration of TP53 allelic state is critical for diagnostic and prognostic precision in MDS as well as in future correlative studies of treatment response