411 research outputs found
Elucidating the aetiology of human Campylobacter coli infections
Peer reviewedPublisher PD
Phenotypic microarrays suggest Escherichia coli ST131 is not a metabolically distinct lineage of extra-intestinal pathogenic E. coli
Extraintestinal pathogenic E. coli (ExPEC) are the major aetiological agent of urinary tract infections (UTIs) in humans. The emergence of the CTX-M producing clone E. coli ST131 represents a major challenge to public health worldwide. A recent study on the metabolic potential of E. coli isolates demonstrated an association between the E. coli ST131 clone and enhanced utilisation of a panel of metabolic substrates. The studies presented here investigated the metabolic potential of ST131 and other major ExPEC ST isolates using 120 API test reagents and found that ST131 isolates demonstrated a lower metabolic activity for 5 of 120 biochemical tests in comparison to non-ST131 ExPEC isolates. Furthermore, comparative phenotypic microarray analysis showed a lack of specific metabolic profile for ST131 isolates countering the suggestion that these bacteria are metabolically fitter and therefore more successful human pathogens
Acute symptoms related to air pollution in urban areas: a study protocol
BACKGROUND: The harmful effects of urban air pollution on general population in terms of annoying symptoms are not adequately evaluated. This is in contrast to the hospital admissions and short term mortality. The present study protocol is designed to assess the association between the level of exposure to certain ambient air pollutants and a wide range of relevant symptoms. Awareness of the impact of pollution on the population at large will make our estimates of the pertinent covert burden imposed on the society more accurate. METHODS/DESIGN: A cross sectional study with spatial analysis for the addresses of the participants was conducted. Data were collected via telephone interviews administered to a representative sample of civilians over age four in the city. Households were selected using random digit dialling procedures and randomization within each household was also performed to select the person to be interviewed. Levels of exposure are quantified by extrapolating the addresses of the study population over the air pollution matrix of the city at the time of the interview and also for different lag times. This information system uses the data from multiple air pollution monitoring stations in conjunction with meteorological data. General linear models are applied for statistical analysis. DISCUSSION: The important limitations of cross-sectional studies on acute effects of air pollution are personal confounders and measurement error for exposure. A wide range of confounders in this study are controlled for in the statistical analysis. Exposure error may be minimised by employing a validated geographical information system that provides accurate estimates and getting detailed information on locations of individual participants during the day. The widespread operation of open air conditioning systems in the target urban area which brings about excellent mixing of the outdoor and indoor air increases the validity of outdoor pollutants levels that are taken as exposure levels
Scalar and vector Slepian functions, spherical signal estimation and spectral analysis
It is a well-known fact that mathematical functions that are timelimited (or
spacelimited) cannot be simultaneously bandlimited (in frequency). Yet the
finite precision of measurement and computation unavoidably bandlimits our
observation and modeling scientific data, and we often only have access to, or
are only interested in, a study area that is temporally or spatially bounded.
In the geosciences we may be interested in spectrally modeling a time series
defined only on a certain interval, or we may want to characterize a specific
geographical area observed using an effectively bandlimited measurement device.
It is clear that analyzing and representing scientific data of this kind will
be facilitated if a basis of functions can be found that are "spatiospectrally"
concentrated, i.e. "localized" in both domains at the same time. Here, we give
a theoretical overview of one particular approach to this "concentration"
problem, as originally proposed for time series by Slepian and coworkers, in
the 1960s. We show how this framework leads to practical algorithms and
statistically performant methods for the analysis of signals and their power
spectra in one and two dimensions, and, particularly for applications in the
geosciences, for scalar and vectorial signals defined on the surface of a unit
sphere.Comment: Submitted to the 2nd Edition of the Handbook of Geomathematics,
edited by Willi Freeden, Zuhair M. Nashed and Thomas Sonar, and to be
published by Springer Verlag. This is a slightly modified but expanded
version of the paper arxiv:0909.5368 that appeared in the 1st Edition of the
Handbook, when it was called: Slepian functions and their use in signal
estimation and spectral analysi
Simple methodology for the quantitative analysis of fatty acids in human red blood cells
In the last years, there has been an increasing
interest in evaluating possible relations between fatty acid
(FA) patterns and the risk for chronic diseases. Due to the
long life span (120 days) of red blood cells (RBCs), their
FA profile reflects a longer term dietary intake and was
recently suggested to be used as an appropriate biomarker
to investigate correlations between FA metabolism and diseases.
Therefore, the aim of this work was to develop and
validate a simple and fast methodology for the quantification
of a broad range of FAs in RBCs using gas chromatography
with flame ionization detector, as a more common
and affordable equipment suitable for biomedical and
nutritional studies including a large number of samples. For
this purpose, different sample preparation protocols were
tested and compared, including a classic two-step method
(Folch method) with modifications and different one-step methods, in which lipid extraction and derivatization were
performed simultaneously. For the one-step methods, different
methylation periods and the inclusion of a saponification
reaction were evaluated. Differences in absolute FA
concentrations were observed among the tested methods,
in particular for some metabolically relevant FAs such as
trans elaidic acid and eicosapentaenoic acid. The one-step
method with saponification and 60 min of methylation time
was selected since it allowed the identification of a higher
number of FAs, and was further submitted to in-house validation.
The proposed methodology provides a simple, fast
and accurate tool to quantitatively analyse FAs in human
RBCs, useful for clinical and nutritional studies.This work received financial support from the
European Union (FEDER funds through COMPETE) and National
Funds (FCT, Fundação para a Ciência e Tecnologia) through project
PTDC/SAU-ENB/116929/2010 and EXPL/EMS-SIS/2215/2013.
ROR acknowledges PhD scholarship SFRH/BD/97658/2013 attributed
by FCT (Fundação para a Ciência e Tecnologia).info:eu-repo/semantics/publishedVersio
Biodegradation of Pig Manure by the Housefly, Musca domestica: A Viable Ecological Strategy for Pig Manure Management
The technology for biodegradation of pig manure by using houseflies in a pilot plant capable of processing 500–700 kg of pig manure per week is described. A single adult cage loaded with 25,000 pupae produced 177.7±32.0 ml of eggs in a 15-day egg-collection period. With an inoculation ratio of 0.4–1.0 ml eggs/kg of manure, the amount of eggs produced by a single cage can suffice for the biodegradation of 178–444 kg of manure. Larval development varied among four different types of pig manure (centrifuged slurry, fresh manure, manure with sawdust, manure without sawdust). Larval survival ranged from 46.9±2.1%, in manure without sawdust, to 76.8±11.9% in centrifuged slurry. Larval development took 6–11 days, depending on the manure type. Processing of 1 kg of wet manure produced 43.9–74.3 g of housefly pupae and the weight of the residue after biodegradation decreased to 0.18–0.65 kg, with marked differences among manure types. Recommendations for the operation of industrial-scale biodegradation facilities are presented and discussed
Ocean acidification reduces demersal zooplankton that reside in tropical coral reefs
The in situ effects of ocean acidification on zooplankton communities remain largely unexplored. Using natural volcanic CO2
seep sites around tropical coral communities, we show a threefold reduction in the biomass of demersal zooplankton in
high-CO2 sites compared with sites with ambient CO2. Differences were consistent across two reefs and three expeditions.
Abundances were reduced in most taxonomic groups. There were no regime shifts in zooplankton community composition and
no differences in fatty acid composition between CO2 levels, suggesting that ocean acidification affects the food quantity but
not the quality for nocturnal plankton feeders. Emergence trap data show that the observed reduction in demersal plankton
may be partly attributable to altered habitat. Ocean acidification changes coral community composition from branching to
massive bouldering coral species, and our data suggest that bouldering corals represent inferior daytime shelter for demersal
zooplankton. Since zooplankton represent a major source of nutrients for corals, fish and other planktivores, this ecological
feedback may represent an additional mechanism of how coral reefs will be affected by ocean acidification
Pharmacological evidence for the stimulation of NADPH oxidase by P2X7 receptors in mouse submandibular glands
ATP in the 100 μM-1 mM concentration range provoked a calcium-independent increase of the oxidation of dichlorodihydrofluorescein (DCFH) to dichlorofluorescein (DCF) by mouse submandibular cells. 3′-O-(4-benzoyl)benzoyl adenosine 5′-triphosphate (BzATP), a P2X7 agonist, but not a muscarinic or an adrenergic agonist, reproduced the effect of ATP. The inhibition of phospholipase C by U73122 or the potentiation of P2X4 receptor activation with ivermectin did not modify the response to ATP. ATP did not increase the oxidation of DCFH in cells isolated from submandibular glands of P2X7 knockout mice or in cells pretreated with a P2X7 antagonist. The inhibition of protein kinase C or of mitogen-activated protein kinase (MAP kinase) or of reduced nicotinamide adenine dinucleotide phosphate (NADPH) oxidase blocked the oxidation of DCFH without affecting the increase of the intracellular concentration of calcium or the uptake of ethidium bromide in response to extracellular ATP. From these results it is concluded that the activation of the P2X7 receptors from submandibular glands triggers an intracellular signalling cascade involving protein kinase C and MAP kinase leading to the stimulation of NADPH oxidase and the subsequent generation of reactive oxygen species
Suppression of Adenosine-Activated Chloride Transport by Ethanol in Airway Epithelia
Alcohol abuse is associated with increased lung infections. Molecular understanding of the underlying mechanisms is not complete. Airway epithelial ion transport regulates the homeostasis of airway surface liquid, essential for airway mucosal immunity and lung host defense. Here, air-liquid interface cultures of Calu-3 epithelial cells were basolaterally exposed to physiologically relevant concentrations of ethanol (0, 25, 50 and 100 mM) for 24 hours and adenosine-stimulated ion transport was measured by Ussing chamber. The ethanol exposure reduced the epithelial short-circuit currents (ISC) in a dose-dependent manner. The ion currents activated by adenosine were chloride conductance mediated by cystic fibrosis transmembrane conductance regulator (CFTR), a cAMP-activated chloride channel. Alloxazine, a specific inhibitor for A2B adenosine receptor (A2BAR), largely abolished the adenosine-stimulated chloride transport, suggesting that A2BAR is a major receptor responsible for regulating the chloride transport of the cells. Ethanol significantly reduced intracellular cAMP production upon adenosine stimulation. Moreover, ethanol-suppression of the chloride secretion was able to be restored by cAMP analogs or by inhibitors to block cAMP degradation. These results imply that ethanol exposure dysregulates CFTR-mediated chloride transport in airways by suppression of adenosine-A2BAR-cAMP signaling pathway, which might contribute to alcohol-associated lung infections
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