Disordered cold regulated 15 proteins protect chloroplast membranes during freezing through binding and folding, but do not stabilize chloroplast enzymes in-vivo

Freezing can severely damage plants, limiting geographical distribution of natural populations and leading to major agronomical losses. Plants native to cold climates acquire increased freezing tolerance during exposure to low nonfreezing temperatures in a process termed cold acclimation. This involves many adaptative responses, including global changes in metabolite content and gene expression, and the accumulation of cold-regulated (COR) proteins, whose functions are largely unknown. Here we report that the chloroplast proteins COR15A and COR15B are necessary for full cold acclimation in Arabidopsis (Arabidopsis thaliana). They protect cell membranes, as indicated by electrolyte leakage and chlorophyll fluorescence measurements. Recombinant COR15 proteins stabilize lactate dehydrogenase during freezing in vitro. However, a transgenic approach shows that they have no influence on the stability of selected plastidic enzymes in vivo, although cold acclimation results in increased enzyme stability. This indicates that enzymes are stabilized by other mechanisms. Recombinant COR15 proteins are disordered in water, but fold into amphipathic a-helices at high osmolyte concentrations in the presence of membranes, a condition mimicking molecular crowding induced by dehydration during freezing. X-ray scattering experiments indicate protein-membrane interactions specifically under such crowding conditions. The COR15-membrane interactions lead to liposome stabilization during freezing. Collectively, our data demonstrate the requirement for COR15 accumulation for full cold acclimation of Arabidopsis. The function of these intrinsically disordered proteins is the stabilization of chloroplast membranes during freezing through a folding and binding mechanism, but not the stabilization of chloroplastic enzymes. This indicates a high functional specificity of these disordered plant proteins

Repulsively bound atom pairs: Overview, Simulations and Links

We review the basic physics of repulsively bound atom pairs in an optical lattice, which were recently observed in the laboratory, including the theory and the experimental implementation. We also briefly discuss related many-body numerical simulations, in which time-dependent Density Matrix Renormalisation Group (DMRG) methods are used to model the many-body physics of a collection of interacting pairs, and give a comparison of the single-particle quasimomentum distribution measured in the experiment and results from these simulations. We then give a short discussion of how these repulsively bound pairs relate to bound states in some other physical systems.Comment: 7 pages, 3 figures, Proceedings of ICAP-2006 (Innsbruck

A minimisation approach for computing the ground state of Gross\u2013Pitaevskii systems

In this paper, we present a minimisation method for computing the ground stateof systems of coupled Gross\u2013Pitaevskii equations. Our approach relies on a spectral decomposition of the solution into Hermite basis functions. Inserting the spectral representation into the energy functional yields a constrained nonlinear minimisation problem for the coefficients. For its numerical solution, we employ a Newton-like method with an approximate line-search strategy. We analyse this method and prove global convergence. Appropriate starting values for the minimisation process are determined by a standard continuation strategy. Numerical examples with two and three-component two-dimensional condensates are included. These experiments demonstrate the reliability of our method and nicely illustrate the effect of phase segregation

Collisional and molecular spectroscopy in an ultracold Bose-Bose mixture

The route toward a Bose-Einstein condensate of dipolar molecules requires the ability to efficiently associate dimers of different chemical species and transfer them to the stable rovibrational ground state. Here, we report on recent spectroscopic measurements of two weakly bound molecular levels and newly observed narrow d-wave Feshbach resonances. The data are used to improve the collisional model for the Bose-Bose mixture 41K87Rb, among the most promising candidates to create a molecular dipolar BEC.Comment: 13 pages, 3 figure

Rapid adaptation of the intrarenal resistance index after living donor kidney transplantation

Background. Limited data exist concerning changes of renal perfusion directly after kidney transplantation. Colour-coded duplex sonography is the accepted method to assess kidney perfusion after transplantation. A widely used, although unspecific, Doppler parameter is the intrarenal resistance index (RI). The aim of this study was to clarify the influence of different patient- and procedure-related factors on RI before and immediately after living kidney transplantation. Methods. In a prospective study, 80 living kidney transplantation donor-recipient pairs were included. RI was measured in the donor 1 to 3 days before nephrectomy and in the recipient during the first hour after transplantation to examine the influence of age, heart rate, duration of cold and warm ischaemia time and immunosuppressive medications. Results. Mean RI did not differ between donors and recipients. RI correlated with age, both in donors (r = 0.58, P < 0.001) and recipients (r = 0.39, P < 0.001). In recipients, 10 or more years younger than their donors (n = 24), an average decrease of 0.05 in RI compared to the donors' value was observed (P = 0.01). Heart rate, cold and warm ischaemia time and immunosuppressive medications had no influence on the recipient RI. In patients with delayed graft function, a significant increase in RI within 14 days was observed. However, the initial RI was not predictive of graft function. Conclusions. The transplanted kidney seems to be able to adjust its RI within a short time despite several potential harmful factors that can occur during the transplantatio

Alternative Splicing of P/Q-Type Ca2+ Channels Shapes Presynaptic Plasticity

Alternative splicing of pre-mRNAs is prominent in the mammalian brain, where it is thought to expand proteome diversity. For example, alternative splicing of voltage-gated Ca2+ channel (VGCC) α1 subunits can generate thousands of isoforms with differential properties and expression patterns. However, the impact of this molecular diversity on brain function, particularly on synaptic transmission, which crucially depends on VGCCs, is unclear. Here, we investigate how two major splice isoforms of P/Q-type VGCCs (Cav2.1[EFa/b]) regulate presynaptic plasticity in hippocampal neurons. We find that the efficacy of P/Q-type VGCC isoforms in supporting synaptic transmission is markedly different, with Cav2.1[EFa] promoting synaptic depression and Cav2.1[EFb] synaptic facilitation. Following a reduction in network activity, hippocampal neurons upregulate selectively Cav2.1[EFa], the isoform exhibiting the higher synaptic efficacy, thus effectively supporting presynaptic homeostatic plasticity. Therefore, the balance between VGCC splice variants at the synapse is a key factor in controlling neurotransmitter release and presynaptic plasticity

Combining photonic crystal and optical Monte Carlo simulations: implementation, validation and application in a positron emission tomography detector

This paper presents a novel approach towards incorporating photonic crystals (PhCs) into optical Monte Carlo (MC) simulations. This approach affords modeling the full diffractive nature of PhCs including their reflection and transmission behavior as well as the manipulation of the photon trajectories through light scattering. The main purpose of this tool is to study the impact of PhCs on the light yield and timing performance of scintillator-based detectors for positron emission tomography (PET). To this end, the PhCs are translated into look-up tables and implemented into the optical MC algorithm. Our simulations are validated in optical experiments using PhC samples fabricated with electron beam lithography. The experimental results indicate that the simulations match the measurements within the accuracy of the experiments. The application of the combined simulation technique to a PET detector module predicts an increase of the total light yield by up to 23% for PhC coatings versus the reference without PhCs. Timing calculations reveal an improvement of the coincident resolving time by up to 6%. The results underline the potential of PhCs to improve light yield and timing of PET detector modules

Chromite and platinum group elements mineralization in the Santa Elena Ultramafic Nappe (Costa Rica): geodynamic implications

Chromitites associated with strongly altered peridotite from six distinct localities in the Santa Elena ultramafic nappe (Costa Rica) have been investigated for the first time. Santa Elena chromitites commonly display a compositional variation from extremely chromiferous (Cr/(Cr+Al)=0.81) to intermediate and aluminous (Cr/(Cr+Al)=0.54). This composition varies along a continuous trend, corresponding to calculated parental liquids which may have been derived from the differentiation of a single batch of boninitic magma with Cr-rich and (Al, Ti)-poor initial composition. Fractional precipitation of chromite probably occurred during differentiation of the boninitic melt and progressive metasomatic reaction with mantle peridotite. The distribution of platinum group elements (PGE) displays the high (Os+Ir+Ru)/(Rh+Pt+Pd) ratio typical of ophiolitic chromitites and, consistently, the platinum group minerals (PGM) encountered are mainly Ru-Os-Ir sulfides and arsenides. Textural relations of most of the platinum group elements suggest crystallization at magmatic temperatures, possibly under relatively high sulfur fugacity as indicated by the apparent lack of primary Os-Ir-Ru alloys. The chemical and mineralogical characteristics of chromitites from the Santa Elena ultramafic nappe have a strong affinity to podiform chromitites in the mantle section of supra-subduction-zone ophiolites. Calculated parental melts of the chromitites are consistent with the differentiation of arc-related magmas, and do not support the oceanic spreading center geodynamic setting previously proposed by some authors