3’ isomiR species and DNA contamination influence reliable quantification of microRNAs by stem-loop quantitative PCR

MicroRNAs (miRNAs) are ∼20-24 nucleotide-long regulatory RNAs that have been proven to play important roles in many cellular processes. Since their discovery, a number of different techniques have been developed to detect and accurately quantify them. For individual mature miRNA measurements, quantitative stem-loop real-time PCR represents a widely used method. Although there are some data on optimization of this technique, there are still many factors that have not been investigated yet. In this study, we have thoroughly optimized this technique and pointed out several important factors that influence reliable quantification. First, we found that total RNA input can affect the measurements. Second, our data showed that carryover DNA contamination could also mislead the detection in a sequence-specific manner. Additionally, we provided evidence that different 3' isomiR species of a particular miRNA can be reverse transcribed and cross-detected even by specifically targeted assays. Besides these, we have investigated the measurement of reaction efficiencies from total RNA samples and the accuracy of simultaneous reverse transcription reactions for increasing reliability and cost effectiveness without the loss of sensitivity and specificity. In summary, we provide a detailed, refined protocol for reliable detection of microRNA species by quantitative stem-loop PCR

Factorization and Scaling in Hadronic Diffraction

In standard Regge theory with a pomeron intercept a(0)=1+\epsilon, the contribution of the tripe-pomeron amplitude to the t=0 differential cross section for single diffraction dissociation has the form d\sigma/dM^2(t=0) \sim s^{2\epsilon}/(M^2)^{1+\epsilon}. For \epsilon>0, this form, which is based on factorization, does not scale with energy. From an analysis of p-p and p-pbar data from fixed target to collider energies, we find that such scaling actually holds, signaling a breakdown of factorization. Phenomenologically, this result can be obtained from a scaling law in diffraction, which is embedded in the hypothesis of pomeron flux renormalization introduced to unitarize the triple pomeron amplitude.Comment: 39 pages, Latex, 16 figure

Diffractive Dissociation and Eikonalization in High Energy pp and p pˉ {\bar p} Collisions

We show that eikonal corrections imposed on diffraction dissociation processes calculated in the triple Regge limit, produce a radical change in the energy dependence of the predicted cross section. The induced correction is shown to be in general agreement with the new experimental data measured at the Tevatron.Comment: 11 pages LATEX, ( two figures not included obtainable from authors) (TAUP 2066-93 and FERMILAB PUB 93/ T

Diffractive Dissociation In The Interacting Gluon Model

We have extended the Interacting Gluon Model (IGM) to calculate diffractive mass spectra generated in hadronic collisions. We show that it is possible to treat both diffractive and non-diffractive events on the same footing, in terms of gluon-gluon collisions. A systematic analysis of available data is performed. The energy dependence of diffractive mass spectra is addressed. They show a moderate narrowing at increasing energies. Predictions for LHC energies are presented.Comment: 12 pages, latex, 14 figures (PostScript Files included); accepted for publication in Phys. Rev. D (Feb.97

The practical Pomeron for high energy proton collimation

We present a model which describes proton scattering data from ISR to Tevatron energies, and which can be applied to collimation in high energy accelerators, such as the LHC and FCC. Collimators remove beam halo particles, so that they do not impinge on vulnerable regions of the machine, such as the superconducting magnets and the experimental areas. In simulating the effect of the collimator jaws it is crucial to model the scattering of protons at small momentum transfer t, as these protons can subsequently survive several turns of the ring before being lost. At high energies these soft processes are well described by Pomeron exchange models. We study the behaviour of elastic and single-diffractive dissociation cross sections over a wide range of energy, and show that the model can be used as a global description of the wide variety of high energy elastic and diffractive data presently available. In particular it models low mass diffraction dissociation, where a rich resonance structure is present, and thus predicts the differential and integrated cross sections in the kinematical range appropriate to the LHC. We incorporate the physics of this model into the beam tracking code MERLIN and use it to simulate the resulting loss maps of the beam halo lost in the collimators in the LHC

Colour-Octet Effects in Radiative Υ\Upsilon Decays

We investigate the effects of colour-octet contributions to the radiative $\Upsilon$ decay within the Bodwin, Braaten and Lepage NRQCD factorization framework. Photons coming both from the coupling to hard processes (`direct') and by collinear emission from light quarks (`fragmentation') are consistently included at next-to-leading order (NLO) in $\alpha_s$. An estimate for the non-perturbative matrix elements which enter in the final result is then obtained. By comparing the NRQCD prediction at NLO for total decay rates with the experimental data, it is found that the non-perturbative parameters must be smaller than expected from the na\"\i ve scaling rules of NRQCD. Nevertheless, colour-octet contributions to the shape of the photon spectrum turn out to be significant.Comment: 25 pages, Latex, 8 figure

Measurement of hadronic cross section and preliminary results on the pion form factor using the radiative return at DAPHNE

In the fixed energy environment of the $e^{+}e^{-}$ collider DA$\Phi$NE, KLOE can measure the cross section of the process $e^{+}e^{-} \to$ hadrons as a function of the hadronic system energy using the radiative return. At energies below 1 GeV, $e^{+}e^{-} \to \rho \to \pi^{+}\pi^{-}$ is the dominating hadronic process. We report here on the status of the analysis for the e^{+}e^{-} \to \ppg channel, which allows to obtain a preliminary measurement of the pion form factor using an integrated luminosity of $\sim73 pb^{-1}$.Comment: Invited talk at the Seventh International Workshop on Tau Lepton Physics (TAU02-WE07), Santa Cruz, Ca, USA, Sept 2002, 9 pages, LaTeX, 9 eps figure

Measurement of the branching fraction for the decay KS --> pi e nu

We present a measurement of the branching ratio BR(KS --> pi e nu) performed using the KLOE detector. KS mesons are produced in the reaction e+ e- --> phi --> KS KL at the DAFNE collider. In a sample of about 5 million KS-tagged events we find 624 +- 30 semileptonic KS decays. Normalizing to the KS --> pi+ pi- count in the same data sample, we obtain BR(KS --> pi e nu) = (6.91 +- 0.37) 10^-4, in agreement with the Standard Model expectation.Comment: 9 pages, 5 Encapsulated Postscript figures. Submitted to Phys. Lett.

Measurement of the leptonic decay widths of the phi-meson with the KLOE detector

The phi-meson leptonic widths, Gee and Gmm, are obtained, respectively, from the e+e- forward-backward asymmetry and the muon cross section around the phi-mass energy. We find Gee=1.32⊕0.05⊕0.03 kev and sqrt(GeeGmm)= 1.320⊕0.018⊕0.017 kev. These results, compatible with Gee=Gmm, provide a precise test of lepton universality. Combining the two results gives G_lept=1.320⊕0.023 kev.Comment: 10 pages and 8 figures to be submitted to Phys.Lett.

Upper Limit on the eta to gamma gamma gamma Branching Ratio with the KLOE Detector

We have searched for the C-violating decay eta to gamma gamma gamma in a sample of ~ 18 million eta mesons produced in phi to eta gamma decays, collected with the KLOE detector at the Frascati phi-factory DAFNE. No signal is observed and we obtain the upper limit BR(eta to gamma gamma gamma) less equal than 1.6x10^(-5) at 90 % C.L.Comment: 8 pages, 5 figures Systematic study refined, some figures reordere