Design, construction, sequence analysis and bioinformatics study of RTB-ipaD gene cassette: A new way in generation of Shigellosis vaccine

زمینه و هدف: شیگلا شایع ترین عامل اسهال می‌باشد. آنتی‌ژن پلاسمیدی IpaD برای تهاجم باکتری به درون سلول میزبان ضروری می‌باشد. یکی از چالش‌ها در باره واکسن مخاطی علیه شیگلا بر پایه پروتئین IpaD قدرت پایین آن می‌باشد. به نظر می‌رسد که با متصل کردن IpaD به یک ناقل و ادجوانت مناسب همچون زیر واحد B سم ریسین، می‌توان پروتئین IpaD را بسیار ایمنوژنیک نمود. این مطالعه به منظور تولید وکتور بیانی نوترکیب دارای کاست ژنی RTB-ipaD، آنالیز تعیین توالی و بررسی بیوانفورماتیکی آن انجام گرفته است. روش بررسی: در این مطالعه ژن های RTB و (163-483) ipaD در وکتور pGEM-T همسانه‌سازی شدند. ژن ipaD به روش برش آنزیمی با ژن RTB به همراه لینکر کد کننده GPGP در وکتور pGEM متصل شد. سپس قطعه کایمریک RTB-ipaD در وکتور بیانی pET28a(+) زیر همسانه‌سازی گردید. در پایان آنالیز تعیین توالی و بررسی بیوانفورماتیکی کاست ژنی انجام گرفت. یافته‌ها: صحت ساخت کاست ژنی RTB-ipaD در وکتور بیانی pET28a(+) با واکنش PCR و هضم آنزیمی مورد تایید قرار گرفت. نتایج حاصل از تعیین توالی کاست ژنی مطابق با توالی ذخیره شده در بانک ژنی بود. مطالعات بیوانفورماتیکی بر مبنای شاخص سازگاری کدون نشان داد این کاست قابلیت بیان در گیاه ترانس ژن و برخی سویه های باکتری اشرشیاکلی را دارد. نتیجه‌گیری: اتصال RTB به عنوان ناقل و ادجوانت به آنتی‌ژن IpaD رویکردی نوین و مطلوب در جهت تولید واکسن مخاطی شیگلوزیس می‌باش

DNA–Carbon Nanotube Complexation Affinity and Photoluminescence Modulation Are Independent

Short single-stranded DNA (ssDNA) has emerged as the natural polymer of choice for noncovalently functionalizing photoluminescent single-walled carbon nanotubes. In addition, specific empirically identified DNA sequences can be used to separate single species (chiralities) of nanotubes, with an exceptionally high purity. Currently, only limited general principles exist for designing DNA–nanotube hybrids amenable to separation processes, due in part to an incomplete understanding of the fundamental interactions between a DNA sequence and a specific nanotube structure, whereas even less is known in the design of nanotube-based sensors with determined optical properties. We therefore developed a combined experimental and analysis platform on the basis of time-resolved near-infrared fluorescence spectroscopy to extract the complete set of photoluminescence parameters that characterizes DNA–nanotube hybrids. Here, we systematically investigated the affinity of the d(GT)n oligonucleotide family for structurally defined carbon nanotubes by measuring photoluminescence response of the nanotube upon oligonucleotide displacement. We found, surprisingly, that the rate of displacement of the oligonucleotides is independent of the coverage on the nanotube, as inferred through the intrinsic optical properties of the hybrid. The kinetics of intensity modulation is essentially a single-exponential, and the time constants, which quantify the stability of DNA binding, span an order of magnitude. Surprisingly, these time constants do not depend on the intrinsic optical parameters within the hybrids, suggesting that the DNA–nanotube stability is not due to increased nanotube surface coverage by DNA. Further, a principal component analysis of the excitation and emission shifts along with intensity enhancement at equilibrium accurately identified the (8,6) nanotube as the partner chirality to (GT)6 ssDNA. When combined, the chirality-resolved equilibrium and kinetics data can guide the development of the DNA–nanotube pairs, with tunable stability and optical modulation. Additionally, this high-throughput optical platform could function as a primary screen for mapping the DNA-chirality recognition phase space

Effect of CO2 exposure on the mechanical strength of geopolymer-stabilized sandy soils

This is the final version. Available on open access from Elsevier via the DOI in this recordIn recent years, there has been growing interest in developing methods for mitigating greenhouse effect, as greenhouse gas emissions continue to contribute to global temperature rise. On the other hand, investigating geopolymers as environmentally friendly binders to mitigate the greenhouse effect using soil stabilization has been widely conducted. However, the effect of CO2 exposure on the mechanical properties of geopolymer-stabilized soils is rarely reported. In this context, the effect of CO2 exposure on the mechanical and microstructural features of sandy soil stabilized with volcanic ash-based geopolymer was investigated. Several factors were concerned, for example the binder content, relative density, CO2 pressure, curing condition, curing time, and carbonate content. The results showed that the compressive strength of the stabilized sandy soil specimens with 20% volcanic ash increased from 3 MPa to 11 MPa. It was also observed that 100 kPa CO2 pressure was the optimal pressure for strength development among the other pressures. The mechanical strength showed a direct relationship with binder content and carbonate content. Additionally, in the ambient curing (AC) condition, the mechanical strength and carbonate content increased with the curing time. However, the required water for carbonation evaporated after 7 d of oven curing (OC) condition and as a result, the 14-d cured samples showed lower mechanical strength and carbonate content in comparison with 7-d cured samples. Moreover, the rate of strength development was higher in OC cured samples than AC cured samples until 7 d due to higher geopolymerization and carbonation rate.MatSoil CompanyEuropean Union Horizon 202

Predictors of quality of life in breast cancer patients under chemotherapy

Background: Today, the quality of life studies has an important role in health care especially in chronic diseases. Breast cancer has third order among women\u2032s malignancies. Now, survival rate for this cancer is long. However breast cancer has several complications that affected the patient\u2032s life. Aims : The aim of this study was to assess the quality of life in Breast cancer patients under chemotherapy. Setting and Design: A cross-sectional study conducted on 119 breast cancer patients that were admitted and treated in chemotherapy ward of Namazi hospital in Shiraz city, south of Iran, between Jan and Feb 2006. Materials and Methods: The QLQ-C30 questionnaire was used to assess quality of life in these patients. Statistical Analysis: We used univariate methods. A multiple regression analysis was performed to identify predictors of quality of life. Results: Mean age of patients was 48.27\ub111.42 with quality of life total score 64.92\ub124.28. All symptoms scales had reverse association with quality of life except appetite loss (P>0.05) and diarrhea (P=0.752). The results of the regression analyses showed that only grade of tumor, occupational status, menopausal status, financial difficulties and dyspnea were statistically significant in predicting patients\u2032 quality of life. Conclusion: In conclusion, this study demonstrates the strength of the relationship between clinical and sociodemographical factors and breast cancer patients\u2032 quality of life. Psychological and financial support for women experiencing breast cancer diagnosis may improve quality of life

Predictors of quality of life in breast cancer patients under chemotherapy

Background: Today, the quality of life studies has an important role in health care especially in chronic diseases. Breast cancer has third order among women′s malignancies. Now, survival rate for this cancer is long. However breast cancer has several complications that affected the patient′s life. Aims : The aim of this study was to assess the quality of life in Breast cancer patients under chemotherapy. Setting and Design: A cross-sectional study conducted on 119 breast cancer patients that were admitted and treated in chemotherapy ward of Namazi hospital in Shiraz city, south of Iran, between Jan and Feb 2006. Materials and Methods: The QLQ-C30 questionnaire was used to assess quality of life in these patients. Statistical Analysis: We used univariate methods. A multiple regression analysis was performed to identify predictors of quality of life. Results: Mean age of patients was 48.27±11.42 with quality of life total score 64.92±24.28. All symptoms scales had reverse association with quality of life except appetite loss (P>0.05) and diarrhea (P=0.752). The results of the regression analyses showed that only grade of tumor, occupational status, menopausal status, financial difficulties and dyspnea were statistically significant in predicting patients′ quality of life. Conclusion: In conclusion, this study demonstrates the strength of the relationship between clinical and sociodemographical factors and breast cancer patients′ quality of life. Psychological and financial support for women experiencing breast cancer diagnosis may improve quality of life

Effect of the exercise programme on the quality of life of prostate cancer survivors: A randomized controlled trial

publishedVersionUnit License Agreemen

Effect of CO2 exposure on the mechanical strength of geopolymer-stabilized sandy soils

In recent years, there has been growing interest in developing methods for mitigating greenhouse effect, as greenhouse gas emissions continue to contribute to global temperature rise. On the other hand, investigating geopolymers as environmentally friendly binders to mitigate the greenhouse effect using soil stabilization has been widely conducted. However, the effect of CO2 exposure on the mechanical properties of geopolymer-stabilized soils is rarely reported. In this context, the effect of CO2 exposure on the mechanical and microstructural features of sandy soil stabilized with volcanic ash-based geopolymer was investigated. Several factors were concerned, for example the binder content, relative density, CO2 pressure, curing condition, curing time, and carbonate content. The results showed that the compressive strength of the stabilized sandy soil specimens with 20% volcanic ash increased from 3 MPa to 11 MPa. It was also observed that 100 kPa CO2 pressure was the optimal pressure for strength development among the other pressures. The mechanical strength showed a direct relationship with binder content and carbonate content. Additionally, in the ambient curing (AC) condition, the mechanical strength and carbonate content increased with the curing time. However, the required water for carbonation evaporated after 7 d of oven curing (OC) condition and as a result, the 14-d cured samples showed lower mechanical strength and carbonate content in comparison with 7-d cured samples. Moreover, the rate of strength development was higher in OC cured samples than AC cured samples until 7 d due to higher geopolymerization and carbonation rate

Investigating accelerated carbonation for alkali activated slag stabilized sandy soil

Portland cement as a commonly used material in soil stabilization projects, releases considerable amounts of CO2 into the atmosphere, highlighting the need to use green binders such as ground granulated blast furnace slag as a substitute for cement. On the other side, extensive research is being conducted on accelerated carbonation treatment to decrease the industry’s carbon footprint. Carbonation transforms CO2 into carbonate minerals. This study investigates the influence of accelerated carbonation on the unconfined compressive strength (UCS) of soil stabilized with alkali-activated slag under ambient and oven curing conditions. Effects of curing time, binder content, relative density, and carbonation pressure (100, 200, and 300 kPa) were also studied. Furthermore, a calcimeter test was conducted to determine the amount of carbonate generated, which reflects CO2 sequestration in soil. The results showed that the carbonated samples achieved higher strength than the non-carbonated samples. However, a slight decrease in UCS was observed with the increase in CO2 pressure. The generated carbonate content directly correlated with the UCS of the samples, which explained the higher strength of carbonated samples. Also, the ambient curing condition was more favorable for the samples stabilized with GGBS, which can be attributed to the supply of required moisture. Results from XRD, SEM, and FTIR indicated that the strength development was due mainly to the formation of carbonation products (CaCO3), which facilitated the densification of solidified materials

Family History as a Risk for Upper Gastrointestinal Tract Cancer: A Case Control Study

Abstract Background: Although, family history of cancer is an important risk factor for upper gastrointestinal cancers development, but limited information is available on the upper gastrointestinal cancers associated with family history in Iran. The purpose of this study was to define upper gastrointestinal cancers risk associated with family history of cancer

Climate change adaptation in conflict-affected countries:A systematic assessment of evidence

People affected by conflict are particularly vulnerable to climate shocks and climate change, yet little is known about climate change adaptation in fragile contexts. While climate events are one of the many contributing drivers of conflict, feedback from conflict increases vulnerability, thereby creating conditions for a vicious cycle of conflict. In this study, we carry out a systematic review of peer-reviewed literature, taking from the Global Adaptation Mapping Initiative (GAMI) dataset to documenting climate change adaptation occurring in 15 conflict-affected countries and compare the findings with records of climate adaptation finance flows and climate-related disasters in each country. Academic literature is sparse for most conflict-affected countries, and available studies tend to have a narrow focus, particularly on agriculture-related adaptation in rural contexts and adaptation by low-income actors. In contrast, multilateral and bilateral funding for climate change adaptation addresses a greater diversity of adaptation needs, including water systems, humanitarian programming, and urban areas. Even among the conflict-affected countries selected, we find disparity, with several countries being the focus of substantial research and funding, and others seeing little to none. Results indicate that people in conflict-affected contexts are adapting to climate change, but there is a pressing need for diverse scholarship across various sectors that documents a broader range of adaptation types and their results