Doctor of Philosophy

dissertationDeep Neural Networks (DNNs) are the state-of-art solution in a growing number of tasks including computer vision, speech recognition, and genomics. However, DNNs are computationally expensive as they are carefully trained to extract and abstract features from raw data using multiple layers of neurons with millions of parameters. In this dissertation, we primarily focus on inference, e.g., using a DNN to classify an input image. This is an operation that will be repeatedly performed on billions of devices in the datacenter, in self-driving cars, in drones, etc. We observe that DNNs spend a vast majority of their runtime to runtime performing matrix-by-vector multiplications (MVM). MVMs have two major bottlenecks: fetching the matrix and performing sum-of-product operations. To address these bottlenecks, we use in-situ computing, where the matrix is stored in programmable resistor arrays, called crossbars, and sum-of-product operations are performed using analog computing. In this dissertation, we propose two hardware units, ISAAC and Newton.In ISAAC, we show that in-situ computing designs can outperform DNN digital accelerators, if they leverage pipelining, smart encodings, and can distribute a computation in time and space, within crossbars, and across crossbars. In the ISAAC design, roughly half the chip area/power can be attributed to the analog-to-digital conversion (ADC), i.e., it remains the key design challenge in mixed-signal accelerators for deep networks. In spite of the ADC bottleneck, ISAAC is able to out-perform the computational efficiency of the state-of-the-art design (DaDianNao) by 8x. In Newton, we take advantage of a number of techniques to address ADC inefficiency. These techniques exploit matrix transformations, heterogeneity, and smart mapping of computation to the analog substrate. We show that Newton can increase the efficiency of in-situ computing by an additional 2x. Finally, we show that in-situ computing, unfortunately, cannot be easily adapted to handle training of deep networks, i.e., it is only suitable for inference of already-trained networks. By improving the efficiency of DNN inference with ISAAC and Newton, we move closer to low-cost deep learning that in turn will have societal impact through self-driving cars, assistive systems for the disabled, and precision medicine

Hybrid Analog-Digital Co-Processing for Scientific Computation

In the past 10 years computer architecture research has moved to more heterogeneity and less adherence to conventional abstractions. Scientists and engineers hold an unshakable belief that computing holds keys to unlocking humanity's Grand Challenges. Acting on that belief they have looked deeper into computer architecture to find specialized support for their applications. Likewise, computer architects have looked deeper into circuits and devices in search of untapped performance and efficiency. The lines between computer architecture layers---applications, algorithms, architectures, microarchitectures, circuits and devices---have blurred. Against this backdrop, a menagerie of computer architectures are on the horizon, ones that forgo basic assumptions about computer hardware, and require new thinking of how such hardware supports problems and algorithms. This thesis is about revisiting hybrid analog-digital computing in support of diverse modern workloads. Hybrid computing had extensive applications in early computing history, and has been revisited for small-scale applications in embedded systems. But architectural support for using hybrid computing in modern workloads, at scale and with high accuracy solutions, has been lacking. I demonstrate solving a variety of scientific computing problems, including stochastic ODEs, partial differential equations, linear algebra, and nonlinear systems of equations, as case studies in hybrid computing. I solve these problems on a system of multiple prototype analog accelerator chips built by a team at Columbia University. On that team I made contributions toward programming the chips, building the digital interface, and validating the chips' functionality. The analog accelerator chip is intended for use in conjunction with a conventional digital host computer. The appeal and motivation for using an analog accelerator is efficiency and performance, but it comes with limitations in accuracy and problem sizes that we have to work around. The first problem is how to do problems in this unconventional computation model. Scientific computing phrases problems as differential equations and algebraic equations. Differential equations are a continuous view of the world, while algebraic equations are a discrete one. Prior work in analog computing mostly focused on differential equations; algebraic equations played a minor role in prior work in analog computing. The secret to using the analog accelerator to support modern workloads on conventional computers is that these two viewpoints are interchangeable. The algebraic equations that underlie most workloads can be solved as differential equations, and differential equations are naturally solvable in the analog accelerator chip. A hybrid analog-digital computer architecture can focus on solving linear and nonlinear algebra problems to support many workloads. The second problem is how to get accurate solutions using hybrid analog-digital computing. The reason that the analog computation model gives less accurate solutions is it gives up representing numbers as digital binary numbers, and instead uses the full range of analog voltage and current to represent real numbers. Prior work has established that encoding data in analog signals gives an energy efficiency advantage as long as the analog data precision is limited. While the analog accelerator alone may be useful for energy-constrained applications where inputs and outputs are imprecise, we are more interested in using analog in conjunction with digital for precise solutions. This thesis gives novel insight that the trick to do so is to solve nonlinear problems where low-precision guesses are useful for conventional digital algorithms. The third problem is how to solve large problems using hybrid analog-digital computing. The reason the analog computation model can't handle large problems is it gives up step-by-step discrete-time operation, instead allowing variables to evolve smoothly in continuous time. To make that happen the analog accelerator works by chaining hardware for mathematical operations end-to-end. During computation analog data flows through the hardware with no overheads in control logic and memory accesses. The downside is then the needed hardware size grows alongside problem sizes. While scientific computing researchers have for a long time split large problems into smaller subproblems to fit in digital computer constraints, this thesis is a first attempt to consider these divide-and-conquer algorithms as an essential tool in using the analog model of computation. As we enter the post-Moore’s law era of computing, unconventional architectures will offer specialized models of computation that uniquely support specific problem types. Two prominent examples are deep neural networks and quantum computers. Recent trends in computer science research show these unconventional architectures will soon have broad adoption. In this thesis I show another specialized, unconventional architecture is to use analog accelerators to solve problems in scientific computing. Computer architecture researchers will discover other important models of computation in the future. This thesis is an example of the discovery process, implementation, and evaluation of how an unconventional architecture supports specialized workloads

Mining a Small Medical Data Set by Integrating the Decision Tree and t-test

[[abstract]]Although several researchers have used statistical methods to prove that aspiration followed by the injection of 95% ethanol left in situ (retention) is an effective treatment for ovarian endometriomas, very few discuss the different conditions that could generate different recovery rates for the patients. Therefore, this study adopts the statistical method and decision tree techniques together to analyze the postoperative status of ovarian endometriosis patients under different conditions. Since our collected data set is small, containing only 212 records, we use all of these data as the training data. Therefore, instead of using a resultant tree to generate rules directly, we use the value of each node as a cut point to generate all possible rules from the tree first. Then, using t-test, we verify the rules to discover some useful description rules after all possible rules from the tree have been generated. Experimental results show that our approach can find some new interesting knowledge about recurrent ovarian endometriomas under different conditions.[[journaltype]]國外[[incitationindex]]EI[[booktype]]紙本[[countrycodes]]FI

On the Edge of Secure Connectivity via Software-Defined Networking

Securing communication in computer networks has been an essential feature ever since the Internet, as we know it today, was started. One of the best known and most common methods for secure communication is to use a Virtual Private Network (VPN) solution, mainly operating with an IP security (IPsec) protocol suite originally published in 1995 (RFC1825). It is clear that the Internet, and networks in general, have changed dramatically since then. In particular, the onset of the Cloud and the Internet-of-Things (IoT) have placed new demands on secure networking. Even though the IPsec suite has been updated over the years, it is starting to reach the limits of its capabilities in its present form. Recent advances in networking have thrown up Software-Defined Networking (SDN), which decouples the control and data planes, and thus centralizes the network control. SDN provides arbitrary network topologies and elastic packet forwarding that have enabled useful innovations at the network level. This thesis studies SDN-powered VPN networking and explains the benefits of this combination. Even though the main context is the Cloud, the approaches described here are also valid for non-Cloud operation and are thus suitable for a variety of other use cases for both SMEs and large corporations. In addition to IPsec, open source TLS-based VPN (e.g. OpenVPN) solutions are often used to establish secure tunnels. Research shows that a full-mesh VPN network between multiple sites can be provided using OpenVPN and it can be utilized by SDN to create a seamless, resilient layer-2 overlay for multiple purposes, including the Cloud. However, such a VPN tunnel suffers from resiliency problems and cannot meet the increasing availability requirements. The network setup proposed here is similar to Software-Defined WAN (SD-WAN) solutions and is extremely useful for applications with strict requirements for resiliency and security, even if best-effort ISP is used. IPsec is still preferred over OpenVPN for some use cases, especially by smaller enterprises. Therefore, this research also examines the possibilities for high availability, load balancing, and faster operational speeds for IPsec. We present a novel approach involving the separation of the Internet Key Exchange (IKE) and the Encapsulation Security Payload (ESP) in SDN fashion to operate from separate devices. This allows central management for the IKE while several separate ESP devices can concentrate on the heavy processing. Initially, our research relied on software solutions for ESP processing. Despite the ingenuity of the architectural concept, and although it provided high availability and good load balancing, there was no anti-replay protection. Since anti-replay protection is vital for secure communication, another approach was required. It thus became clear that the ideal solution for such large IPsec tunneling would be to have a pool of fast ESP devices, but to confine the IKE operation to a single centralized device. This would obviate the need for load balancing but still allow high availability via the device pool. The focus of this research thus turned to the study of pure hardware solutions on an FPGA, and their feasibility and production readiness for application in the Cloud context. Our research shows that FPGA works fluently in an SDN network as a standalone IPsec accelerator for ESP packets. The proposed architecture has 10 Gbps throughput, yet the latency is less than 10 µs, meaning that this architecture is especially efficient for data center use and offers increased performance and latency requirements. The high demands of the network packet processing can be met using several different approaches, so this approach is not just limited to the topics presented in this thesis. Global network traffic is growing all the time, so the development of more efficient methods and devices is inevitable. The increasing number of IoT devices will result in a lot of network traffic utilising the Cloud infrastructures in the near future. Based on the latest research, once SDN and hardware acceleration have become fully integrated into the Cloud, the future for secure networking looks promising. SDN technology will open up a wide range of new possibilities for data forwarding, while hardware acceleration will satisfy the increased performance requirements. Although it still remains to be seen whether SDN can answer all the requirements for performance, high availability and resiliency, this thesis shows that it is a very competent technology, even though we have explored only a minor fraction of its capabilities

Exponential families on resource-constrained systems

This work is about the estimation of exponential family models on resource-constrained systems. Our main goal is learning probabilistic models on devices with highly restricted storage, arithmetic, and computational capabilities—so called, ultra-low-power devices. Enhancing the learning capabilities of such devices opens up opportunities for intelligent ubiquitous systems in all areas of life, from medicine, over robotics, to home automation—to mention just a few. We investigate the inherent resource consumption of exponential families, review existing techniques, and devise new methods to reduce the resource consumption. The resource consumption, however, must not be reduced at all cost. Exponential families possess several desirable properties that must be preserved: Any probabilistic model encodes a conditional independence structure—our methods keep this structure intact. Exponential family models are theoretically well-founded. Instead of merely finding new algorithms based on intuition, our models are formalized within the framework of exponential families and derived from first principles. We do not introduce new assumptions which are incompatible with the formal derivation of the base model, and our methods do not rely on properties of particular high-level applications. To reduce the memory consumption, we combine and adapt reparametrization and regularization in an innovative way that facilitates the sparse parametrization of high-dimensional non-stationary time-series. The procedure allows us to load models in memory constrained systems, which would otherwise not fit. We provide new theoretical insights and prove that the uniform distance between the data generating process and our reparametrized solution is bounded. To reduce the arithmetic complexity of the learning problem, we derive the integer exponential family, based on the very definition of sufficient statistics and maximum entropy estimation. New integer-valued inference and learning algorithms are proposed, based on variational inference, proximal optimization, and regularization. The benefit of this technique is larger, the weaker the underlying system is, e.g., the probabilistic inference on a state-of-the-art ultra-lowpower microcontroller can be accelerated by a factor of 250. While our integer inference is fast, the underlying message passing relies on the variational principle, which is inexact and has unbounded error on general graphs. Since exact inference and other existing methods with bounded error exhibit exponential computational complexity, we employ near minimax optimal polynomial approximations to yield new stochastic algorithms for approximating the partition function and the marginal probabilities. Changing the polynomial degree allows us to control the complexity and the error of our new stochastic method. We provide an error bound that is parametrized by the number of samples, the polynomial degree, and the norm of the model’s parameter vector. Moreover, important intermediate quantities can be precomputed and shared with the weak computational device to reduce the resource requirement of our method even further. All new techniques are empirically evaluated on synthetic and real-world data, and the results confirm the properties which are predicted by our theoretical derivation. Our novel techniques allow a broader range of models to be learned on resource-constrained systems and imply several new research possibilities

Proceedings of the Fifth NASA/NSF/DOD Workshop on Aerospace Computational Control

The Fifth Annual Workshop on Aerospace Computational Control was one in a series of workshops sponsored by NASA, NSF, and the DOD. The purpose of these workshops is to address computational issues in the analysis, design, and testing of flexible multibody control systems for aerospace applications. The intention in holding these workshops is to bring together users, researchers, and developers of computational tools in aerospace systems (spacecraft, space robotics, aerospace transportation vehicles, etc.) for the purpose of exchanging ideas on the state of the art in computational tools and techniques

Fundamentals

Volume 1 establishes the foundations of this new field. It goes through all the steps from data collection, their summary and clustering, to different aspects of resource-aware learning, i.e., hardware, memory, energy, and communication awareness. Machine learning methods are inspected with respect to resource requirements and how to enhance scalability on diverse computing architectures ranging from embedded systems to large computing clusters

Fundamentals

Volume 1 establishes the foundations of this new field. It goes through all the steps from data collection, their summary and clustering, to different aspects of resource-aware learning, i.e., hardware, memory, energy, and communication awareness. Machine learning methods are inspected with respect to resource requirements and how to enhance scalability on diverse computing architectures ranging from embedded systems to large computing clusters