3rd EGEE User Forum

We have organized this book in a sequence of chapters, each chapter associated with an application or technical theme introduced by an overview of the contents, and a summary of the main conclusions coming from the Forum for the chapter topic. The first chapter gathers all the plenary session keynote addresses, and following this there is a sequence of chapters covering the application flavoured sessions. These are followed by chapters with the flavour of Computer Science and Grid Technology. The final chapter covers the important number of practical demonstrations and posters exhibited at the Forum. Much of the work presented has a direct link to specific areas of Science, and so we have created a Science Index, presented below. In addition, at the end of this book, we provide a complete list of the institutes and countries involved in the User Forum

D3.1. Architecture and design of the platform

This document aims to establish the requirements and the technological basis and design of the PANACEA platform. These are the main goals of the document: - Survey the different technological approaches that can be used in PANACEA. - Specify some guidelines for the metadata. - Establish the requirements for the platform. - Make a Common Interface proposal for the tools. - Propose a format for the data to be exchanged by the tools (Travelling Object). - Choose the technologies that will be used to develop the platform. - Propose a workplan

A formal architecture-centric and model driven approach for the engineering of science gateways

From n-Tier client/server applications, to more complex academic Grids, or even the most recent and promising industrial Clouds, the last decade has witnessed significant developments in distributed computing. In spite of this conceptual heterogeneity, Service-Oriented Architecture (SOA) seems to have emerged as the common and underlying abstraction paradigm, even though different standards and technologies are applied across application domains. Suitable access to data and algorithms resident in SOAs via so-called ‘Science Gateways’ has thus become a pressing need in order to realize the benefits of distributed computing infrastructures.In an attempt to inform service-oriented systems design and developments in Grid-based biomedical research infrastructures, the applicant has consolidated work from three complementary experiences in European projects, which have developed and deployed large-scale production quality infrastructures and more recently Science Gateways to support research in breast cancer, pediatric diseases and neurodegenerative pathologies respectively. In analyzing the requirements from these biomedical applications the applicant was able to elaborate on commonly faced issues in Grid development and deployment, while proposing an adapted and extensible engineering framework. Grids implement a number of protocols, applications, standards and attempt to virtualize and harmonize accesses to them. Most Grid implementations therefore are instantiated as superposed software layers, often resulting in a low quality of services and quality of applications, thus making design and development increasingly complex, and rendering classical software engineering approaches unsuitable for Grid developments.The applicant proposes the application of a formal Model-Driven Engineering (MDE) approach to service-oriented developments, making it possible to define Grid-based architectures and Science Gateways that satisfy quality of service requirements, execution platform and distribution criteria at design time. An novel investigation is thus presented on the applicability of the resulting grid MDE (gMDE) to specific examples and conclusions are drawn on the benefits of this approach and its possible application to other areas, in particular that of Distributed Computing Infrastructures (DCI) interoperability, Science Gateways and Cloud architectures developments

Negotiated resource brokering for quality of service provision of grid applications

Grid Computing is a distributed computing paradigm where many computers often formed from different organisations work together so that their computing power may be aggregated. Grids are often heterogeneous and resources vary significantly in CPU power, available RAM, disk space, OS, architecture and installed software etc. Added to this lack of uniformity is that best effort services are usually offered, as opposed to services that offer guarantees upon completion time via the use of Service Level Agreements (SLAs). The lack of guarantees means the uptake of Grids is stifled. The challenge tackled here is to add such guarantees, thus ensuring users are more willing to use the Grid given an obvious reluctance to pay or contribute, if the quality of the services returned lacks any guarantees. Grids resources are also finite in nature, hence priorities need establishing in order to best meet any guarantees placed upon the limited resources available. An economic approach is hence adopted to ensure end users reveal their true priorities for jobs, whilst also adding incentive for provisioning services, via a service charge. An economically oriented model is therefore proposed that provides SLAs with bicriteria constraints upon time and cost. This model is tested via discrete event simulation and a simulator is presented that is capable of testing the model. An architecture is then established that was developed to utilise the economic model for negotiating SLAs. Finally experimentation is reported upon from the use of the software developed when it was deployed upon a testbed, including admission control and steering of jobs within the Grid. Results are presented that show the interactions and relationship between the time and cost constraints within the model, including transitions between the dominance of one constraint over the other and other things such as the effects of rescheduling upon the market

Introducing distributed dynamic data-intensive (D3) science: Understanding applications and infrastructure

A common feature across many science and engineering applications is the amount and diversity of data and computation that must be integrated to yield insights. Data sets are growing larger and becoming distributed; and their location, availability and properties are often time-dependent. Collectively, these characteristics give rise to dynamic distributed data-intensive applications. While "static" data applications have received significant attention, the characteristics, requirements, and software systems for the analysis of large volumes of dynamic, distributed data, and data-intensive applications have received relatively less attention. This paper surveys several representative dynamic distributed data-intensive application scenarios, provides a common conceptual framework to understand them, and examines the infrastructure used in support of applications.Comment: 38 pages, 2 figure

Sensor web geoprocessing on the grid

Recent standardisation initiatives in the fields of grid computing and geospatial sensor middleware provide an exciting opportunity for the composition of large scale geospatial monitoring and prediction systems from existing components. Sensor middleware standards are paving the way for the emerging sensor web which is envisioned to make millions of geospatial sensors and their data publicly accessible by providing discovery, task and query functionality over the internet. In a similar fashion, concurrent development is taking place in the field of grid computing whereby the virtualisation of computational and data storage resources using middleware abstraction provides a framework to share computing resources. Sensor web and grid computing share a common vision of world-wide connectivity and in their current form they are both realised using web services as the underlying technological framework. The integration of sensor web and grid computing middleware using open standards is expected to facilitate interoperability and scalability in near real-time geoprocessing systems. The aim of this thesis is to develop an appropriate conceptual and practical framework in which open standards in grid computing, sensor web and geospatial web services can be combined as a technological basis for the monitoring and prediction of geospatial phenomena in the earth systems domain, to facilitate real-time decision support. The primary topic of interest is how real-time sensor data can be processed on a grid computing architecture. This is addressed by creating a simple typology of real-time geoprocessing operations with respect to grid computing architectures. A geoprocessing system exemplar of each geoprocessing operation in the typology is implemented using contemporary tools and techniques which provides a basis from which to validate the standards frameworks and highlight issues of scalability and interoperability. It was found that it is possible to combine standardised web services from each of these aforementioned domains despite issues of interoperability resulting from differences in web service style and security between specifications. A novel integration method for the continuous processing of a sensor observation stream is suggested in which a perpetual processing job is submitted as a single continuous compute job. Although this method was found to be successful two key challenges remain; a mechanism for consistently scheduling real-time jobs within an acceptable time-frame must be devised and the tradeoff between efficient grid resource utilisation and processing latency must be balanced. The lack of actual implementations of distributed geoprocessing systems built using sensor web and grid computing has hindered the development of standards, tools and frameworks in this area. This work provides a contribution to the small number of existing implementations in this field by identifying potential workflow bottlenecks in such systems and gaps in the existing specifications. Furthermore it sets out a typology of real-time geoprocessing operations that are anticipated to facilitate the development of real-time geoprocessing software.EThOS - Electronic Theses Online ServiceEngineering and Physical Sciences Research Council (EPSRC) : School of Civil Engineering & Geosciences, Newcastle UniversityGBUnited Kingdo

Monitoring and Optimization of ATLAS Tier 2 Center GoeGrid

The demand on computational and storage resources is growing along with the amount of infor- mation that needs to be processed and preserved. In order to ease the provisioning of the digital services to the growing number of consumers, more and more distributed computing systems and platforms are actively developed and employed. The building block of the distributed computing infrastructure are single computing centers, similar to the Worldwide LHC Computing Grid, Tier 2 centre GoeGrid. The main motivation of this thesis was the optimization of GoeGrid perfor- mance by efficient monitoring. The goal has been achieved by means of the GoeGrid monitoring information analysis. The data analysis approach was based on the adaptive-network-based fuzzy inference system (ANFIS) and machine learning algorithm such as Linear Support Vector Machine (SVM). The main object of the research was the digital service, since availability, reliability and ser- viceability of the computing platform can be measured according to the constant and stable provisioning of the services. Due to the widely used concept of the service oriented architecture (SOA) for large computing facilities, in advance knowing of the service state as well as the quick and accurate detection of its disability allows to perform the proactive management of the com- puting facility. The proactive management is considered as a core component of the computing facility management automation concept, such as Autonomic Computing. Thus in time as well as in advance and accurate identification of the provided service status can be considered as a contribution to the computing facility management automation, which is directly related to the provisioning of the stable and reliable computing resources. Based on the case studies, performed using the GoeGrid monitoring data, consideration of the approaches as generalized methods for the accurate and fast identification and prediction of the service status is reasonable. Simplicity and low consumption of the computing resources allow to consider the methods in the scope of the Autonomic Computing component