Reading list of selected PASM-related publications

Prepared for a chapter to be published in the forthcoming Encyclopedia of Parallel Computing by Springer Publishing Company. The Encyclopedia will contain a broad coverage of the field and will include entries on machine organization, programming, algorithms, and applications. The broad coverage, together with extensive pointers to the literature for in-depth study, is expected to make the Encyclopedia a useful reference tool in parallel computing

Doctor of Philosophy

dissertationIn-memory big data applications are growing in popularity, including in-memory versions of the MapReduce framework. The move away from disk-based datasets shifts the performance bottleneck from slow disk accesses to memory bandwidth. MapReduce is a data-parallel application, and is therefore amenable to being executed on as many parallel processors as possible, with each processor requiring high amounts of memory bandwidth. We propose using Near Data Computing (NDC) as a means to develop systems that are optimized for in-memory MapReduce workloads, offering high compute parallelism and even higher memory bandwidth. This dissertation explores three different implementations and styles of NDC to improve MapReduce execution. First, we use 3D-stacked memory+logic devices to process the Map phase on compute elements in close proximity to database splits. Second, we attempt to replicate the performance characteristics of the 3D-stacked NDC using only commodity memory and inexpensive processors to improve performance of both Map and Reduce phases. Finally, we incorporate fixed-function hardware accelerators to improve sorting performance within the Map phase. This dissertation shows that it is possible to improve in-memory MapReduce performance by potentially two orders of magnitude by designing system and memory architectures that are specifically tailored to that end

Circuit simulation using distributed waveform relaxation techniques

Simulation plays an important role in the design of integrated circuits. Due to high costs and large delays involved in their fabrication, simulation is commonly used to verify functionality and to predict performance before fabrication. This thesis describes analysis, implementation and performance evaluation of a distributed memory parallel waveform relaxation technique for the electrical circuit simulation of MOS VLSI circuits. The waveform relaxation technique exhibits inherent parallelism due to the partitioning of a circuit into a number of sub-circuits. These subcircuits can be concurrently simulated on parallel processors. Different forms of parallelism in the direct method and the waveform relaxation technique are studied. An analysis of single queue and distributed queue approaches to implement parallel waveform relaxation on distributed memory machines is performed and their performance implications are studied. The distributed queue approach selected for exploiting the coarse grain parallelism across sub-circuits is described. Parallel waveform relaxation programs based on Gauss-Seidel and Gauss-Jacobi techniques are implemented using a network of eight Transputers. Static and dynamic load balancing strategies are studied. A dynamic load balancing algorithm is developed and implemented. Results of parallel implementation are analyzed to identify sources of bottlenecks. This thesis has demonstrated the applicability of a low cost distributed memory multi-computer system for simulation of MOS VLSI circuits. Speed-up measurements prove that a five times improvement in the speed of calculations can be achieved using a full window parallel Gauss-Jacobi waveform relaxation algorithm. Analysis of overheads shows that load imbalance is the major source of overhead and that the fraction of the computation which must be performed sequentially is very low. Communication overhead depends on the nature of the parallel architecture and the design of communication mechanisms. The run-time environment (parallel processing framework) developed in this research exploits features of the Transputer architecture to reduce the effect of the communication overhead by effectively overlapping computation with communications, and running communications processes at a higher priority. This research will contribute to the development of low cost, high performance workstations for computer-aided design and analysis of VLSI circuits

Efficient Mapping of Neural Network Models on a Class of Parallel Architectures.

This dissertation develops a formal and systematic methodology for efficient mapping of several contemporary artificial neural network (ANN) models on k-ary n-cube parallel architectures (KNC\u27s). We apply the general mapping to several important ANN models including feedforward ANN\u27s trained with backpropagation algorithm, radial basis function networks, cascade correlation learning, and adaptive resonance theory networks. Our approach utilizes a parallel task graph representing concurrent operations of the ANN model during training. The mapping of the ANN is performed in two steps. First, the parallel task graph of the ANN is mapped to a virtual KNC of compatible dimensionality. This involves decomposing each operation into its atomic tasks. Second, the dimensionality of the virtual KNC architecture is recursively reduced through a sequence of transformations until a desired metric is optimized. We refer to this process as folding the virtual architecture. The optimization criteria we consider in this dissertation are defined in terms of the iteration time of the algorithm on the folded architecture. If necessary, the mapping scheme may utilize a subset of the processors of a given KNC architecture if it results in the most efficient simulation. A unique feature of our mapping is that it systematically selects an appropriate degree of parallelism leading to a highly efficient realization of the ANN model on KNC architectures. A novel feature of our work is its ability to efficiently map unit-allocating ANN\u27s. These networks possess a dynamic structure which grows during training. We present a highly efficient scheme for simulating such networks on existing KNC parallel architectures. We assume an upper bound on size of the neural network We perform the folding such that the iteration time of the largest network is minimized. We show that our mapping leads to near-optimal simulation of smaller instances of the neural network. In addition, based on our mapping no data migration or task rescheduling is needed as the size of network grows

Scheduled routing for the NuMesh

Thesis (M.S.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 1994.Includes bibliographical references (leaves 66-68).by Milan Singh Minsky.M.S

Off-chip Communications Architectures For High Throughput Network Processors

In this work, we present off-chip communications architectures for line cards to increase the throughput of the currently used memory system. In recent years there is a significant increase in memory bandwidth demand on line cards as a result of higher line rates, an increase in deep packet inspection operations and an unstoppable expansion in lookup tables. As line-rate data and NPU processing power increase, memory access time becomes the main system bottleneck during data store/retrieve operations. The growing demand for memory bandwidth contrasts the notion of indirect interconnect methodologies. Moreover, solutions to the memory bandwidth bottleneck are limited by physical constraints such as area and NPU I/O pins. Therefore, indirect interconnects are replaced with direct, packet-based networks such as mesh, torus or k-ary n-cubes. We investigate multiple k-ary n-cube based interconnects and propose two variations of 2-ary 3-cube interconnect called the 3D-bus and 3D-mesh. All of the k-ary n-cube interconnects include multiple, highly efficient techniques to route, switch, and control packet flows in order to minimize congestion spots and packet loss. We explore the tradeoffs between implementation constraints and performance. We also developed an event-driven, interconnect simulation framework to evaluate the performance of packet-based off-chip k-ary n-cube interconnect architectures for line cards. The simulator uses the state-of-the-art software design techniques to provide the user with a flexible yet robust tool, that can emulate multiple interconnect architectures under non-uniform traffic patterns. Moreover, the simulator offers the user with full control over network parameters, performance enhancing features and simulation time frames that make the platform as identical as possible to the real line card physical and functional properties. By using our network simulator, we reveal the best processor-memory configuration, out of multiple configurations, that achieves optimal performance. Moreover, we explore how network enhancement techniques such as virtual channels and sub-channeling improve network latency and throughput. Our performance results show that k-ary n-cube topologies, and especially our modified version of 2-ary 3-cube interconnect - the 3D-mesh, significantly outperform existing line card interconnects and are able to sustain higher traffic loads. The flow control mechanism proved to extensively reduce hot-spots, load-balance areas of high traffic rate and achieve low transmission failure rate. Moreover, it can scale to adopt more memories and/or processors and as a result to increase the line card\u27s processing power

HPCCP/CAS Workshop Proceedings 1998

This publication is a collection of extended abstracts of presentations given at the HPCCP/CAS (High Performance Computing and Communications Program/Computational Aerosciences Project) Workshop held on August 24-26, 1998, at NASA Ames Research Center, Moffett Field, California. The objective of the Workshop was to bring together the aerospace high performance computing community, consisting of airframe and propulsion companies, independent software vendors, university researchers, and government scientists and engineers. The Workshop was sponsored by the HPCCP Office at NASA Ames Research Center. The Workshop consisted of over 40 presentations, including an overview of NASA's High Performance Computing and Communications Program and the Computational Aerosciences Project; ten sessions of papers representative of the high performance computing research conducted within the Program by the aerospace industry, academia, NASA, and other government laboratories; two panel sessions; and a special presentation by Mr. James Bailey