Semantic Relations in a Medical Digital Library

In this paper, we describe the VesaliusTM Project, a multi-modal collection of anatomical resources under development at Columbia University. 1 Our focus is on the need for navigational tools to effectively access the wealth of electronic information on anatomy, including life-like 3D images of anatomical entities that can be interactively viewed and browsed. We describe a key component which must be in place in order to develop a flexible and reusable digital library system, namely an anatomical knowledge base containing a `nucleus' of anatomical information specifically designed to make it possible to develop a wide spectrum of curriculum applications that use and extend the information in the knowledge base. The unique contribution of our research lies in the dual focus on user needs and on effective use of knowledge representation theory in order to develop a system that makes it possible to take advantage of interactive 3D models and the wealth of other anatomical data now available

Ontology Learning for Medical Digital Libraries

Abstract. Ontologies play an important role in the Semantic Web as well as in digital library and knowledge portal applications. This project seeks to develop an automatic method to enrich existing ontologies, especially in the identifica-tion of semantic relations between concepts in the ontology. The initial study investigates an approach of identifying pairs of related concepts in a medical domain using association rule induction and inferring the type of semantic rela-tion using the UMLS (Unified Medical Language System) semantic net. This is evaluated by comparing the result with manually assigned semantic relations based on an analysis of medical abstracts containing each pair of concepts. Our initial finding shows that the automatic process is promising, achieving a 68% coverage compared to manually tagging. However, natural language processing of medical abstracts is likely to improve the identification of semantic relations.

Improving Knowledge Retrieval in Digital Libraries Applying Intelligent Techniques

Nowadays an enormous quantity of heterogeneous and distributed information is stored in the digital University. Exploring online collections to find knowledge relevant to a user’s interests is a challenging work. The artificial intelligence and Semantic Web provide a common framework that allows knowledge to be shared and reused in an efficient way. In this work we propose a comprehensive approach for discovering E-learning objects in large digital collections based on analysis of recorded semantic metadata in those objects and the application of expert system technologies. We have used Case Based-Reasoning methodology to develop a prototype for supporting efficient retrieval knowledge from online repositories. We suggest a conceptual architecture for a semantic search engine. OntoUS is a collaborative effort that proposes a new form of interaction between users and digital libraries, where the latter are adapted to users and their surroundings

Cross-concordances: terminology mapping and its effectiveness for information retrieval

The German Federal Ministry for Education and Research funded a major terminology mapping initiative, which found its conclusion in 2007. The task of this terminology mapping initiative was to organize, create and manage 'cross-concordances' between controlled vocabularies (thesauri, classification systems, subject heading lists) centred around the social sciences but quickly extending to other subject areas. 64 crosswalks with more than 500,000 relations were established. In the final phase of the project, a major evaluation effort to test and measure the effectiveness of the vocabulary mappings in an information system environment was conducted. The paper reports on the cross-concordance work and evaluation results.Comment: 19 pages, 4 figures, 11 tables, IFLA conference 200

Natural language processing

Beginning with the basic issues of NLP, this chapter aims to chart the major research activities in this area since the last ARIST Chapter in 1996 (Haas, 1996), including: (i) natural language text processing systems - text summarization, information extraction, information retrieval, etc., including domain-specific applications; (ii) natural language interfaces; (iii) NLP in the context of www and digital libraries ; and (iv) evaluation of NLP systems

The Open Research Web: A Preview of the Optimal and the Inevitable

The multiple online research impact metrics we are developing will allow the rich new database , the Research Web, to be navigated, analyzed, mined and evaluated in powerful new ways that were not even conceivable in the paper era – nor even in the online era, until the database and the tools became openly accessible for online use by all: by researchers, research institutions, research funders, teachers, students, and even by the general public that funds the research and for whose benefit it is being conducted: Which research is being used most? By whom? Which research is growing most quickly? In what direction? under whose influence? Which research is showing immediate short-term usefulness, which shows delayed, longer term usefulness, and which has sustained long-lasting impact? Which research and researchers are the most authoritative? Whose research is most using this authoritative research, and whose research is the authoritative research using? Which are the best pointers (“hubs”) to the authoritative research? Is there any way to predict what research will have later citation impact (based on its earlier download impact), so junior researchers can be given resources before their work has had a chance to make itself felt through citations? Can research trends and directions be predicted from the online database? Can text content be used to find and compare related research, for influence, overlap, direction? Can a layman, unfamiliar with the specialized content of a field, be guided to the most relevant and important work? These are just a sample of the new online-age questions that the Open Research Web will begin to answer

Conceptual biology, hypothesis discovery, and text mining: Swanson's legacy

Innovative biomedical librarians and information specialists who want to expand their roles as expert searchers need to know about profound changes in biology and parallel trends in text mining. In recent years, conceptual biology has emerged as a complement to empirical biology. This is partly in response to the availability of massive digital resources such as the network of databases for molecular biologists at the National Center for Biotechnology Information. Developments in text mining and hypothesis discovery systems based on the early work of Swanson, a mathematician and information scientist, are coincident with the emergence of conceptual biology. Very little has been written to introduce biomedical digital librarians to these new trends. In this paper, background for data and text mining, as well as for knowledge discovery in databases (KDD) and in text (KDT) is presented, then a brief review of Swanson's ideas, followed by a discussion of recent approaches to hypothesis discovery and testing. 'Testing' in the context of text mining involves partially automated methods for finding evidence in the literature to support hypothetical relationships. Concluding remarks follow regarding (a) the limits of current strategies for evaluation of hypothesis discovery systems and (b) the role of literature-based discovery in concert with empirical research. Report of an informatics-driven literature review for biomarkers of systemic lupus erythematosus is mentioned. Swanson's vision of the hidden value in the literature of science and, by extension, in biomedical digital databases, is still remarkably generative for information scientists, biologists, and physicians. © 2006Bekhuis; licensee BioMed Central Ltd

Interoperability between classification systems using metadata

The First on-Line conference on Metadata and Semantics Research Conference (MTSR'05): Approaches to advanced information systems, 21-30 November 2005Metadata are structures which catalogue, classify, describe and articulate electronic information. The Subject element of Dublin Core is used for c1assification systems and subject headings. There are five ways of applying semantic interoperability: interoperability between controlled vocabularies in the same language; between controlled vocabularies in different languages and classification systems; between subject headings and c1assification systems; between c1assification systems; and between languages. The relations between diverse types of standards or systems present diverse difficulties. The electronic information container, which is Internet, guarantees the trend to try and achieve the interoperability of content analysis, whether it be between c1assification systems, or subject headings. The organisation of information in a physical format has transferred its organisational forms to the structuring of electronic information. The digital formal transforms the organisational form itself. If, in information the message is the medium, in organisation the structure is the medium.Publicad

Proceedings of the 15th Conference on Knowledge Organization WissOrg'17 of theGerman Chapter of the International Society for Knowledge Organization (ISKO),30th November - 1st December 2017, Freie Universität Berlin

Wissensorganisation is the name of a series of biennial conferences / workshops with a long tradition, organized by the German chapter of the International Society of Knowledge Organization (ISKO). The 15th conference in this series, held at Freie Universität Berlin, focused on knowledge organization for the digital humanities. Structuring, and interacting with, large data collections has become a major issue in the digital humanities. In these proceedings, various aspects of knowledge organization in the digital humanities are discussed, and the authors of the papers show how projects in the digital humanities deal with knowledge organization.Wissensorganisation ist der Name einer Konferenzreihe mit einer langjährigen Tradition, die von der Deutschen Sektion der International Society of Knowledge Organization (ISKO) organisiert wird. Die 15. Konferenz dieser Reihe, die an der Freien Universität Berlin stattfand, hatte ihren Schwerpunkt im Bereich Wissensorganisation und Digital Humanities. Die Strukturierung von und die Interaktion mit großen Datenmengen ist ein zentrales Thema in den Digital Humanities. In diesem Konferenzband werden verschiedene Aspekte der Wissensorganisation in den Digital Humanities diskutiert, und die Autoren der einzelnen Beiträge zeigen, wie die Digital Humanities mit Wissensorganisation umgehen