Improving the bees algorithm for complex optimisation problems

An improved swarm-based optimisation algorithm from the Bees Algorithm family for solving complex optimisation problems is proposed. Like other Bees Algorithms, the algorithm performs a form of exploitative local search combined with random exploratory global search. This thesis details the development and optimisation of this algorithm and demonstrates its robustness. The development includes a new method of tuning the Bees Algorithm called Meta Bees Algorithm and the functionality of the proposed method is compared to the standard Bees Algorithm and to a range of state-of-the-art optimisation algorithms. A new fitness evaluation method has been developed to enable the Bees Algorithm to solve a stochastic optimisation problem. The new modified Bees Algorithm was tested on the optimisation of parameter values for the Ant Colony Optimisation algorithm when solving Travelling Salesman Problems. Finally, the Bees Algorithm has been adapted and employed to solve complex combinatorial problems. The algorithm has been combined with two neighbourhood operators to solve such problems. The performance of the proposed Bees Algorithm has been tested on a number of travelling salesman problems, including two problems on printed circuit board assembly machine sequencing

Improved versions of the bees algorithm for global optimisation

This research focuses on swarm-based optimisation algorithms, specifically the Bees Algorithm. The Bees Algorithm was inspired by the foraging behaviour of honey bees in nature. It employs a combination of exploration and exploitation to find the solutions of optimisation problems. This thesis presents three improved versions of the Bees Algorithm aimed at speeding up its operation and facilitating the location of the global optimum. For the first improvement, an algorithm referred to as the Nelder and Mead Bees Algorithm (NMBA) was developed to provide a guiding direction during the neighbourhood search stage. The second improved algorithm, named the recombination-based Bees Algorithm (rBA), is a variant of the Bees Algorithm that utilises a recombination operator between the exploited and abandoned sites to produce new candidates closer to optimal solutions. The third improved Bees Algorithm, called the guided global best Bees Algorithm (gBA), introduces a new neighbourhood shrinking strategy based on the best solution so far for a more effective exploitation search and develops a new bee recruitment mechanism to reduce the number of parameters. The proposed algorithms were tested on a set of unconstrained numerical functions and constrained mechanical engineering design problems. The performance of the algorithms was compared with the standard Bees Algorithm and other swarm based algorithms. The results showed that the improved Bees Algorithms performed better than the standard Bees Algorithm and other algorithms on most of the problems tested. Furthermore, the algorithms also involve no additional parameters and a reduction on the number of parameters as well

Standard methods for molecular research in Apis mellifera

From studies of behaviour, chemical communication, genomics and developmental biology, among many others, honey bees have long been a key organism for fundamental breakthroughs in biology. With a genome sequence in hand, and much improved genetic tools, honey bees are now an even more appealing target for answering the major questions of evolutionary biology, population structure, and social organization. At the same time, agricultural incentives to understand how honey bees fall prey to disease, or evade and survive their many pests and pathogens, have pushed for a genetic understanding of individual and social immunity in this species. Below we describe and reference tools for using modern molecular-biology techniques to understand bee behaviour, health, and other aspects of their biology. We focus on DNA and RNA techniques, largely because techniques for assessing bee proteins are covered in detail in Hartfelder et al. (2013). We cover practical needs for bee sampling, transport, and storage, and then discuss a range of current techniques for genetic analysis. We then provide a roadmap for genomic resources and methods for studying bees, followed by specific statistical protocols for population genetics, quantitative genetics, and phylogenetics. Finally, we end with three important tools for predicting gene regulation and function in honey bees: Fluorescence in situ hybridization (FISH), RNA interference (RNAi), and the estimation of chromosomal methylation and its role in epigenetic gene regulation.Fundação para a Ciência e Tecnologi

Enhancing the bees algorithm using the traplining metaphor

This work aims to improve the performance of the Bees Algorithm (BA), particularly in terms of simplicity, accuracy, and convergence. Three improvements were made in this study as a result of bees’ traplining behaviour. The first improvement was the parameter reduction of the Bees Algorithm. This strategy recruits and assigns worker bees to exploit and explore all patches. Both searching processes are assigned using the Triangular Distribution Random Number Generator. The most promising patches have more workers and are subject to more exploitation than the less productive patches. This technique reduced the original parameters into two parameters. The results show that the Bi-BA is just as efficient as the basic BA, although it has fewer parameters. Following that, another improvement was proposed to increase the diversification performance of the Combinatorial Bees Algorithm (CBA). The technique employs a novel constructive heuristic that considers the distance and the turning angle of the bees’ flight. When foraging for honey, bees generally avoid making a sharp turn. By including this turning angle as the second consideration, it can control CBA’s initial solution diversity. Third, the CBA is strengthened to enable an intensification strategy that avoids falling into a local optima trap. The approach is based on the behaviour of bees when confronted with threats. They will keep away from re-visiting those flowers during the next bout for reasons like predators, rivals, or honey run out. The approach will remove temporarily threatened flowers from the whole tour, eliminating the sharp turn, and reintroduces them again to the habitual tour’s nearest edge. The technique could effectively achieve an equilibrium between exploration and exploitation mechanisms. The results show that the strategy is very competitive compared to other population-based nature-inspired algorithms. Finally, the enhanced Bees Algorithms are demonstrated on two real-world engineering problems, namely, Printed Circuit Board insertion sequencing and vehicles routing problem

Soft computing applied to optimization, computer vision and medicine

Artificial intelligence has permeated almost every area of life in modern society, and its significance continues to grow. As a result, in recent years, Soft Computing has emerged as a powerful set of methodologies that propose innovative and robust solutions to a variety of complex problems. Soft Computing methods, because of their broad range of application, have the potential to significantly improve human living conditions. The motivation for the present research emerged from this background and possibility. This research aims to accomplish two main objectives: On the one hand, it endeavors to bridge the gap between Soft Computing techniques and their application to intricate problems. On the other hand, it explores the hypothetical benefits of Soft Computing methodologies as novel effective tools for such problems. This thesis synthesizes the results of extensive research on Soft Computing methods and their applications to optimization, Computer Vision, and medicine. This work is composed of several individual projects, which employ classical and new optimization algorithms. The manuscript presented here intends to provide an overview of the different aspects of Soft Computing methods in order to enable the reader to reach a global understanding of the field. Therefore, this document is assembled as a monograph that summarizes the outcomes of these projects across 12 chapters. The chapters are structured so that they can be read independently. The key focus of this work is the application and design of Soft Computing approaches for solving problems in the following: Block Matching, Pattern Detection, Thresholding, Corner Detection, Template Matching, Circle Detection, Color Segmentation, Leukocyte Detection, and Breast Thermogram Analysis. One of the outcomes presented in this thesis involves the development of two evolutionary approaches for global optimization. These were tested over complex benchmark datasets and showed promising results, thus opening the debate for future applications. Moreover, the applications for Computer Vision and medicine presented in this work have highlighted the utility of different Soft Computing methodologies in the solution of problems in such subjects. A milestone in this area is the translation of the Computer Vision and medical issues into optimization problems. Additionally, this work also strives to provide tools for combating public health issues by expanding the concepts to automated detection and diagnosis aid for pathologies such as Leukemia and breast cancer. The application of Soft Computing techniques in this field has attracted great interest worldwide due to the exponential growth of these diseases. Lastly, the use of Fuzzy Logic, Artificial Neural Networks, and Expert Systems in many everyday domestic appliances, such as washing machines, cookers, and refrigerators is now a reality. Many other industrial and commercial applications of Soft Computing have also been integrated into everyday use, and this is expected to increase within the next decade. Therefore, the research conducted here contributes an important piece for expanding these developments. The applications presented in this work are intended to serve as technological tools that can then be used in the development of new devices

Intelligent optimisation of analogue circuits using particle swarm optimisation, genetic programming and genetic folding

This thesis was submitted for the degree of Doctor of Philosophy and awarded by Brunel University London.This research presents various intelligent optimisation methods which are: genetic algorithm (GA), particle swarm optimisation (PSO), artificial bee colony algorithm (ABCA), firefly algorithm (FA) and bacterial foraging optimisation (BFO). It attempts to minimise analogue electronic filter and amplifier circuits, taking a cascode amplifier design as a case study, and utilising the above-mentioned intelligent optimisation algorithms with the aim of determining the best among them to be used. Small signal analysis (SSA) conversion of the cascode circuit is performed while mesh analysis is applied to transform the circuit to matrices form. Computer programmes are developed in Matlab using the above mentioned intelligent optimisation algorithms to minimise the cascode amplifier circuit. The objective function is based on input resistance, output resistance, power consumption, gain, upperfrequency band and lower frequency band. The cascode circuit result presented, applied the above-mentioned existing intelligent optimisation algorithms to optimise the same circuit and compared the techniques with the one using Nelder-Mead and the original circuit simulated in PSpice. Four circuit element types (resistors, capacitors, transistors and operational amplifier (op-amp)) are targeted using the optimisation techniques and subsequently compared to the initial circuit. The PSO based optimised result has proven to be best followed by that of GA optimised technique regarding power consumption reduction and frequency response. This work modifies symbolic circuit analysis in Matlab (MSCAM) tool which utilises Netlist from PSpice or from simulation to generate matrices. These matrices are used for optimisation or to compute circuit parameters. The tool is modified to handle both active and passive elements such as inductors, resistors, capacitors, transistors and op-amps. The transistors are transformed into SSA and op-amp use the SSA that is easy to implement in programming. Results are presented to illustrate the potential of the algorithm. Results are compared to PSpice simulation and the approach handled larger matrices dimensions compared to that of existing symbolic circuit analysis in Matlab tool (SCAM). The SCAM formed matrices by adding additional rows and columns due to how the algorithm was developed which takes more computer resources and limit its performance. Next to this, this work attempts to reduce component count in high-pass, low-pass, and all- pass active filters. Also, it uses a lower order filter to realise same results as higher order filter regarding frequency response curve. The optimisers applied are GA, PSO (the best two methods among them) and Nelder-Mead (the worst method) are used subsequently for the filters optimisation. The filters are converted into their SSA while nodal analysis is applied to transform the circuit to matrices form. High-pass, low-pass, and all- pass active filters results are presented to demonstrate the effectiveness of the technique. Results presented have shown that with a computer code, a lower order op-amp filter can be applied to realise the same results as that of a higher order one. Furthermore, PSO can realise the best results regarding frequency response for the three results, followed by GA whereas Nelder- Mead has the worst results. Furthermore, this research introduced genetic folding (GF), MSCAM, and automatically simulated Netlist into existing genetic programming (GP), which is a new contribution in this work, which enhances the development of independent Matlab toolbox for the evolution of passive and active filter circuits. The active filter circuit evolution especially when operational amplifier is involved as a component is of it first kind in circuit evolution. In the work, only one software package is used instead of combining PSpice and Matlab in electronic circuit simulation. This saves the elapsed time for moving the simulation between the two platforms and reduces the cost of subscription. The evolving circuit from GP using Matlab simulation is automatically transformed into a symbolic Netlist also by Matlab simulation. The Netlist is fed into MSCAM; where MSCAM uses it to generate matrices for the simulation. The matrices enhance frequency response analysis of low-pass, high-pass, band-pass, band-stop of active and passive filter circuits. After the circuit evolution using the developed GP, PSO is then applied to optimise some of the circuits. The algorithm is tested with twelve different circuits (five examples of the active filter, four examples of passive filter circuits and three examples of transistor amplifier circuits) and the results presented have shown that the algorithm is efficient regarding design.Tertiary Education Trust Fund (TETFUND) through University of Calabar, Nigeria

The role of visual adaptation in cichlid fish speciation

D. Shane Wright (1) , Ole Seehausen (2), Ton G.G. Groothuis (1), Martine E. Maan (1) (1) University of Groningen; GELIFES; EGDB(2) Department of Fish Ecology & Evolution, EAWAG Centre for Ecology, Evolution and Biogeochemistry, Kastanienbaum AND Institute of Ecology and Evolution, Aquatic Ecology, University of Bern.In less than 15,000 years, Lake Victoria cichlid fishes have radiated into as many as 500 different species. Ecological and sexual sel ection are thought to contribute to this ongoing speciation process, but genetic differentiation remains low. However, recent work in visual pigment genes, opsins, has shown more diversity. Unlike neighboring Lakes Malawi and Tanganyika, Lake Victoria is highly turbid, resulting in a long wavelength shift in the light spectrum with increasing depth, providing an environmental gradient for exploring divergent coevolution in sensory systems and colour signals via sensory drive. Pundamilia pundamila and Pundamilia nyererei are two sympatric species found at rocky islands across southern portions of Lake Victoria, differing in male colouration and the depth they reside. Previous work has shown species differentiation in colour discrimination, corresponding to divergent female preferences for conspecific male colouration. A mechanistic link between colour vision and preference would provide a rapid route to reproductive isolation between divergently adapting populations. This link is tested by experimental manip ulation of colour vision - raising both species and their hybrids under light conditions mimicking shallow and deep habitats. We quantify the expression of retinal opsins and test behaviours important for speciation: mate choice, habitat preference, and fo raging performance

Advances in Artificial Intelligence: Models, Optimization, and Machine Learning

The present book contains all the articles accepted and published in the Special Issue “Advances in Artificial Intelligence: Models, Optimization, and Machine Learning” of the MDPI Mathematics journal, which covers a wide range of topics connected to the theory and applications of artificial intelligence and its subfields. These topics include, among others, deep learning and classic machine learning algorithms, neural modelling, architectures and learning algorithms, biologically inspired optimization algorithms, algorithms for autonomous driving, probabilistic models and Bayesian reasoning, intelligent agents and multiagent systems. We hope that the scientific results presented in this book will serve as valuable sources of documentation and inspiration for anyone willing to pursue research in artificial intelligence, machine learning and their widespread applications