Why High-Performance Modelling and Simulation for Big Data Applications Matters

Modelling and Simulation (M&S) offer adequate abstractions to manage the complexity of analysing big data in scientific and engineering domains. Unfortunately, big data problems are often not easily amenable to efficient and effective use of High Performance Computing (HPC) facilities and technologies. Furthermore, M&S communities typically lack the detailed expertise required to exploit the full potential of HPC solutions while HPC specialists may not be fully aware of specific modelling and simulation requirements and applications. The COST Action IC1406 High-Performance Modelling and Simulation for Big Data Applications has created a strategic framework to foster interaction between M&S experts from various application domains on the one hand and HPC experts on the other hand to develop effective solutions for big data applications. One of the tangible outcomes of the COST Action is a collection of case studies from various computing domains. Each case study brought together both HPC and M&S experts, giving witness of the effective cross-pollination facilitated by the COST Action. In this introductory article we argue why joining forces between M&S and HPC communities is both timely in the big data era and crucial for success in many application domains. Moreover, we provide an overview on the state of the art in the various research areas concerned

Exascale machines require new programming paradigms and runtimes

Extreme scale parallel computing systems will have tens of thousands of optionally accelerator-equiped nodes with hundreds of cores each, as well as deep memory hierarchies and complex interconnect topologies. Such Exascale systems will provide hardware parallelism at multiple levels and will be energy constrained. Their extreme scale and the rapidly deteriorating reliablity of their hardware components means that Exascale systems will exhibit low mean-time-between-failure values. Furthermore, existing programming models already require heroic programming and optimisation efforts to achieve high efficiency on current supercomputers. Invariably, these efforts are platform-specific and non-portable. In this paper we will explore the shortcomings of existing programming models and runtime systems for large scale computing systems. We then propose and discuss important features of programming paradigms and runtime system to deal with large scale computing systems with a special focus on data-intensive applications and resilience. Finally, we also discuss code sustainability issues and propose several software metrics that are of paramount importance for code development for large scale computing systems

Sensor web geoprocessing on the grid

Recent standardisation initiatives in the fields of grid computing and geospatial sensor middleware provide an exciting opportunity for the composition of large scale geospatial monitoring and prediction systems from existing components. Sensor middleware standards are paving the way for the emerging sensor web which is envisioned to make millions of geospatial sensors and their data publicly accessible by providing discovery, task and query functionality over the internet. In a similar fashion, concurrent development is taking place in the field of grid computing whereby the virtualisation of computational and data storage resources using middleware abstraction provides a framework to share computing resources. Sensor web and grid computing share a common vision of world-wide connectivity and in their current form they are both realised using web services as the underlying technological framework. The integration of sensor web and grid computing middleware using open standards is expected to facilitate interoperability and scalability in near real-time geoprocessing systems. The aim of this thesis is to develop an appropriate conceptual and practical framework in which open standards in grid computing, sensor web and geospatial web services can be combined as a technological basis for the monitoring and prediction of geospatial phenomena in the earth systems domain, to facilitate real-time decision support. The primary topic of interest is how real-time sensor data can be processed on a grid computing architecture. This is addressed by creating a simple typology of real-time geoprocessing operations with respect to grid computing architectures. A geoprocessing system exemplar of each geoprocessing operation in the typology is implemented using contemporary tools and techniques which provides a basis from which to validate the standards frameworks and highlight issues of scalability and interoperability. It was found that it is possible to combine standardised web services from each of these aforementioned domains despite issues of interoperability resulting from differences in web service style and security between specifications. A novel integration method for the continuous processing of a sensor observation stream is suggested in which a perpetual processing job is submitted as a single continuous compute job. Although this method was found to be successful two key challenges remain; a mechanism for consistently scheduling real-time jobs within an acceptable time-frame must be devised and the tradeoff between efficient grid resource utilisation and processing latency must be balanced. The lack of actual implementations of distributed geoprocessing systems built using sensor web and grid computing has hindered the development of standards, tools and frameworks in this area. This work provides a contribution to the small number of existing implementations in this field by identifying potential workflow bottlenecks in such systems and gaps in the existing specifications. Furthermore it sets out a typology of real-time geoprocessing operations that are anticipated to facilitate the development of real-time geoprocessing software.EThOS - Electronic Theses Online ServiceEngineering and Physical Sciences Research Council (EPSRC) : School of Civil Engineering & Geosciences, Newcastle UniversityGBUnited Kingdo

From Social Data Mining to Forecasting Socio-Economic Crisis

Socio-economic data mining has a great potential in terms of gaining a better understanding of problems that our economy and society are facing, such as financial instability, shortages of resources, or conflicts. Without large-scale data mining, progress in these areas seems hard or impossible. Therefore, a suitable, distributed data mining infrastructure and research centers should be built in Europe. It also appears appropriate to build a network of Crisis Observatories. They can be imagined as laboratories devoted to the gathering and processing of enormous volumes of data on both natural systems such as the Earth and its ecosystem, as well as on human techno-socio-economic systems, so as to gain early warnings of impending events. Reality mining provides the chance to adapt more quickly and more accurately to changing situations. Further opportunities arise by individually customized services, which however should be provided in a privacy-respecting way. This requires the development of novel ICT (such as a self- organizing Web), but most likely new legal regulations and suitable institutions as well. As long as such regulations are lacking on a world-wide scale, it is in the public interest that scientists explore what can be done with the huge data available. Big data do have the potential to change or even threaten democratic societies. The same applies to sudden and large-scale failures of ICT systems. Therefore, dealing with data must be done with a large degree of responsibility and care. Self-interests of individuals, companies or institutions have limits, where the public interest is affected, and public interest is not a sufficient justification to violate human rights of individuals. Privacy is a high good, as confidentiality is, and damaging it would have serious side effects for society.Comment: 65 pages, 1 figure, Visioneer White Paper, see http://www.visioneer.ethz.c

High-Performance Modelling and Simulation for Big Data Applications

This open access book was prepared as a Final Publication of the COST Action IC1406 “High-Performance Modelling and Simulation for Big Data Applications (cHiPSet)“ project. Long considered important pillars of the scientific method, Modelling and Simulation have evolved from traditional discrete numerical methods to complex data-intensive continuous analytical optimisations. Resolution, scale, and accuracy have become essential to predict and analyse natural and complex systems in science and engineering. When their level of abstraction raises to have a better discernment of the domain at hand, their representation gets increasingly demanding for computational and data resources. On the other hand, High Performance Computing typically entails the effective use of parallel and distributed processing units coupled with efficient storage, communication and visualisation systems to underpin complex data-intensive applications in distinct scientific and technical domains. It is then arguably required to have a seamless interaction of High Performance Computing with Modelling and Simulation in order to store, compute, analyse, and visualise large data sets in science and engineering. Funded by the European Commission, cHiPSet has provided a dynamic trans-European forum for their members and distinguished guests to openly discuss novel perspectives and topics of interests for these two communities. This cHiPSet compendium presents a set of selected case studies related to healthcare, biological data, computational advertising, multimedia, finance, bioinformatics, and telecommunications

Design and management of image processing pipelines within CPS : Acquired experience towards the end of the FitOptiVis ECSEL Project

Cyber-Physical Systems (CPSs) are dynamic and reactive systems interacting with processes, environment and, sometimes, humans. They are often distributed with sensors and actuators, characterized for being smart, adaptive, predictive and react in real-time. Indeed, image- and video-processing pipelines are a prime source for environmental information for systems allowing them to take better decisions according to what they see. Therefore, in FitOptiVis, we are developing novel methods and tools to integrate complex image- and video-processing pipelines. FitOptiVis aims to deliver a reference architecture for describing and optimizing quality and resource management for imaging and video pipelines in CPSs both at design- and run-time. The architecture is concretized in low-power, high-performance, smart components, and in methods and tools for combined design-time and run-time multi-objective optimization and adaptation within system and environment constraints.Peer reviewe

Preserving the Quality of Architectural Tactics in Source Code

In any complex software system, strong interdependencies exist between requirements and software architecture. Requirements drive architectural choices while also being constrained by the existing architecture and by what is economically feasible. This makes it advisable to concurrently specify the requirements, to devise and compare alternative architectural design solutions, and ultimately to make a series of design decisions in order to satisfy each of the quality concerns. Unfortunately, anecdotal evidence has shown that architectural knowledge tends to be tacit in nature, stored in the heads of people, and lost over time. Therefore, developers often lack comprehensive knowledge of underlying architectural design decisions and inadvertently degrade the quality of the architecture while performing maintenance activities. In practice, this problem can be addressed through preserving the relationships between the requirements, architectural design decisions and their implementations in the source code, and then using this information to keep developers aware of critical architectural aspects of the code. This dissertation presents a novel approach that utilizes machine learning techniques to recover and preserve the relationships between architecturally significant requirements, architectural decisions and their realizations in the implemented code. Our approach for recovering architectural decisions includes the two primary stages of training and classification. In the first stage, the classifier is trained using code snippets of different architectural decisions collected from various software systems. During this phase, the classifier learns the terms that developers typically use to implement each architectural decision. These ``indicator terms\u27\u27 represent method names, variable names, comments, or the development APIs that developers inevitably use to implement various architectural decisions. A probabilistic weight is then computed for each potential indicator term with respect to each type of architectural decision. The weight estimates how strongly an indicator term represents a specific architectural tactics/decisions. For example, a term such as \emph{pulse} is highly representative of the heartbeat tactic but occurs infrequently in the authentication. After learning the indicator terms, the classifier can compute the likelihood that any given source file implements a specific architectural decision. The classifier was evaluated through several different experiments including classical cross-validation over code snippets of 50 open source projects and on the entire source code of a large scale software system. Results showed that classifier can reliably recognize a wide range of architectural decisions. The technique introduced in this dissertation is used to develop the Archie tool suite. Archie is a plug-in for Eclipse and is designed to detect wide range of architectural design decisions in the code and to protect them from potential degradation during maintenance activities. It has several features for performing change impact analysis of architectural concerns at both the code and design level and proactively keep developers informed of underlying architectural decisions during maintenance activities. Archie is at the stage of technology transfer at the US Department of Homeland Security where it is purely used to detect and monitor security choices. Furthermore, this outcome is integrated into the Department of Homeland Security\u27s Software Assurance Market Place (SWAMP) to advance research and development of secure software systems

High-Performance Modelling and Simulation for Big Data Applications

This open access book was prepared as a Final Publication of the COST Action IC1406 “High-Performance Modelling and Simulation for Big Data Applications (cHiPSet)“ project. Long considered important pillars of the scientific method, Modelling and Simulation have evolved from traditional discrete numerical methods to complex data-intensive continuous analytical optimisations. Resolution, scale, and accuracy have become essential to predict and analyse natural and complex systems in science and engineering. When their level of abstraction raises to have a better discernment of the domain at hand, their representation gets increasingly demanding for computational and data resources. On the other hand, High Performance Computing typically entails the effective use of parallel and distributed processing units coupled with efficient storage, communication and visualisation systems to underpin complex data-intensive applications in distinct scientific and technical domains. It is then arguably required to have a seamless interaction of High Performance Computing with Modelling and Simulation in order to store, compute, analyse, and visualise large data sets in science and engineering. Funded by the European Commission, cHiPSet has provided a dynamic trans-European forum for their members and distinguished guests to openly discuss novel perspectives and topics of interests for these two communities. This cHiPSet compendium presents a set of selected case studies related to healthcare, biological data, computational advertising, multimedia, finance, bioinformatics, and telecommunications