Characterization of a robust probabilistic framework for brain magnetic resonance image data distributions

Probabilistic characterisation of image data for accurate prognosis and treatment planning remains a long-standing problem in medical research, especially when the data distribution depicts flat-top and high-order contact. Such flat-top distributions are quite common in brain magnetic resonance (MR) image data, where the density drops sharply beyond the flat interval. Intuitively, it would indicate a bipartition of data into positive region containing observations definitely belonging to the image class and boundary region with observations possibly belonging to it. The flat peak would also imply that multiple values are equally most likely to belong to that class. However, the popular probability distributions used in such cases are unimodal, creating ambiguity about the positive region. In this work, we study the statistical properties and develop likelihood-based iterative estimation method for the parameters of a novel class of platykurtic probability distributions containing normal, called the stomped normal distribution, that provides more accurate modelling to the flat-top data distributions. The robustness of the proposed stomped normal model has been illustrated with six simulated and nine real brain MR volumes. Our analysis shows substantial improvement in explaining a variety of shapes of data distributions using the proposed probability model

Discovering similarities in Landsat satellite images using the Kmeans method

This article different ways for the treatment and identification of similarities in satellite images. By means of the systematic review of the literature it is possible to know the different existing forms for the treatment of this type of objects and by means of the implementation that is described, the operation of the K-means algorithm is shown to help the segmentation and analysis of characteristics associated to the color. In this type of objects, a descriptive analysis of the results thrown by the method is finally carried out

Temporal - spatial recognizer for multi-label data

Pattern recognition is an important artificial intelligence task with practical applications in many fields such as medical and species distribution. Such application involves overlapping data points which are demonstrated in the multi- label dataset. Hence, there is a need for a recognition algorithm that can separate the overlapping data points in order to recognize the correct pattern. Existing recognition methods suffer from sensitivity to noise and overlapping points as they could not recognize a pattern when there is a shift in the position of the data points. Furthermore, the methods do not implicate temporal information in the process of recognition, which leads to low quality of data clustering. In this study, an improved pattern recognition method based on Hierarchical Temporal Memory (HTM) is proposed to solve the overlapping in data points of multi- label dataset. The imHTM (Improved HTM) method includes improvement in two of its components; feature extraction and data clustering. The first improvement is realized as TS-Layer Neocognitron algorithm which solves the shift in position problem in feature extraction phase. On the other hand, the data clustering step, has two improvements, TFCM and cFCM (TFCM with limit- Chebyshev distance metric) that allows the overlapped data points which occur in patterns to be separated correctly into the relevant clusters by temporal clustering. Experiments on five datasets were conducted to compare the proposed method (imHTM) against statistical, template and structural pattern recognition methods. The results showed that the percentage of success in recognition accuracy is 99% as compared with the template matching method (Featured-Based Approach, Area-Based Approach), statistical method (Principal Component Analysis, Linear Discriminant Analysis, Support Vector Machines and Neural Network) and structural method (original HTM). The findings indicate that the improved HTM can give an optimum pattern recognition accuracy, especially the ones in multi- label dataset

A Survey on Deep Learning in Medical Image Analysis

Deep learning algorithms, in particular convolutional networks, have rapidly become a methodology of choice for analyzing medical images. This paper reviews the major deep learning concepts pertinent to medical image analysis and summarizes over 300 contributions to the field, most of which appeared in the last year. We survey the use of deep learning for image classification, object detection, segmentation, registration, and other tasks and provide concise overviews of studies per application area. Open challenges and directions for future research are discussed.Comment: Revised survey includes expanded discussion section and reworked introductory section on common deep architectures. Added missed papers from before Feb 1st 201

A non-invasive diagnostic system for early assessment of acute renal transplant rejection.

Early diagnosis of acute renal transplant rejection (ARTR) is of immense importance for appropriate therapeutic treatment administration. Although the current diagnostic technique is based on renal biopsy, it is not preferred due to its invasiveness, recovery time (1-2 weeks), and potential for complications, e.g., bleeding and/or infection. In this thesis, a computer-aided diagnostic (CAD) system for early detection of ARTR from 4D (3D + b-value) diffusion-weighted (DW) MRI data is developed. The CAD process starts from a 3D B-spline-based data alignment (to handle local deviations due to breathing and heart beat) and kidney tissue segmentation with an evolving geometric (level-set-based) deformable model. The latter is guided by a voxel-wise stochastic speed function, which follows from a joint kidney-background Markov-Gibbs random field model accounting for an adaptive kidney shape prior and for on-going visual kidney-background appearances. A cumulative empirical distribution of apparent diffusion coefficient (ADC) at different b-values of the segmented DW-MRI is considered a discriminatory transplant status feature. Finally, a classifier based on deep learning of a non-negative constrained stacked auto-encoder is employed to distinguish between rejected and non-rejected renal transplants. In the “leave-one-subject-out” experiments on 53 subjects, 98% of the subjects were correctly classified (namely, 36 out of 37 rejected transplants and 16 out of 16 nonrejected ones). Additionally, a four-fold cross-validation experiment was performed, and an average accuracy of 96% was obtained. These experimental results hold promise of the proposed CAD system as a reliable non-invasive diagnostic tool

Approche robuste pour la segmentation et la classification d’images m´edicales

Image segmentation is a vital process in various fields, including robotics, object recognition, and medical imaging. In medical imaging, accurate segmentation of brain tissues from MRI images is crucial for diagnosing and treating brain disorders such as Alzheimer’s disease, epilepsy, schizophrenia, multiple sclerosis, and cancer. This thesis proposes an automatic fuzzy method for brain MRI segmentation. Firstly, the proposed method aims to improve the efficiency of the Fuzzy C-Means (FCM) algorithm by reducing the need for manual intervention in cluster initialization and determining the number of clusters. For this purpose, we introduce an adaptive splitmerge technique that effectively divides the image into several homogeneous regions using a multi-threshold method based on entropy information. During the merge process, a new distance metric is introduced to combine the regions that are both highly similar within the merged region and effectively separated from others. The cluster centers and numbers obtained from the adaptive split-merge step serve as the initial parameters for the FCM algorithm. The obtained fuzzy partitions are evaluated using a novel proposed validity index. Secondly, we present a novel method to address the challenge of noisy pixels in the FCM algorithm by incorporating spatial information. Specifically, we assign a crucial role to the central pixel in the clustering process, provided it is not corrupted with noise. However, if it is corrupted with noise, its influence is reduced. Furthermore, we propose a novel quantitative metric for replacing the central pixel with one of its neighbors if it can improve the segmentation result in terms of compactness and separation. To evaluate the effectiveness of the proposed method, a thorough comparison with existing clustering techniques is conducted, considering cluster validity functions, segmentation accuracy, and tissue segmentation accuracy. The evaluation comprises comprehensive qualitative and quantitative assessments, providing strong evidence of the superior performance of the proposed approach

The Liver Tumor Segmentation Benchmark (LiTS)

In this work, we report the set-up and results of the Liver Tumor Segmentation Benchmark (LITS) organized in conjunction with the IEEE International Symposium on Biomedical Imaging (ISBI) 2016 and International Conference On Medical Image Computing Computer Assisted Intervention (MICCAI) 2017. Twenty four valid state-of-the-art liver and liver tumor segmentation algorithms were applied to a set of 131 computed tomography (CT) volumes with different types of tumor contrast levels (hyper-/hypo-intense), abnormalities in tissues (metastasectomie) size and varying amount of lesions. The submitted algorithms have been tested on 70 undisclosed volumes. The dataset is created in collaboration with seven hospitals and research institutions and manually reviewed by independent three radiologists. We found that not a single algorithm performed best for liver and tumors. The best liver segmentation algorithm achieved a Dice score of 0.96(MICCAI) whereas for tumor segmentation the best algorithm evaluated at 0.67(ISBI) and 0.70(MICCAI). The LITS image data and manual annotations continue to be publicly available through an online evaluation system as an ongoing benchmarking resource.Comment: conferenc

On Improving Generalization of CNN-Based Image Classification with Delineation Maps Using the CORF Push-Pull Inhibition Operator

Deployed image classification pipelines are typically dependent on the images captured in real-world environments. This means that images might be affected by different sources of perturbations (e.g. sensor noise in low-light environments). The main challenge arises by the fact that image quality directly impacts the reliability and consistency of classification tasks. This challenge has, hence, attracted wide interest within the computer vision communities. We propose a transformation step that attempts to enhance the generalization ability of CNN models in the presence of unseen noise in the test set. Concretely, the delineation maps of given images are determined using the CORF push-pull inhibition operator. Such an operation transforms an input image into a space that is more robust to noise before being processed by a CNN. We evaluated our approach on the Fashion MNIST data set with an AlexNet model. It turned out that the proposed CORF-augmented pipeline achieved comparable results on noise-free images to those of a conventional AlexNet classification model without CORF delineation maps, but it consistently achieved significantly superior performance on test images perturbed with different levels of Gaussian and uniform noise

Women in Artificial intelligence (AI)

This Special Issue, entitled "Women in Artificial Intelligence" includes 17 papers from leading women scientists. The papers cover a broad scope of research areas within Artificial Intelligence, including machine learning, perception, reasoning or planning, among others. The papers have applications to relevant fields, such as human health, finance, or education. It is worth noting that the Issue includes three papers that deal with different aspects of gender bias in Artificial Intelligence. All the papers have a woman as the first author. We can proudly say that these women are from countries worldwide, such as France, Czech Republic, United Kingdom, Australia, Bangladesh, Yemen, Romania, India, Cuba, Bangladesh and Spain. In conclusion, apart from its intrinsic scientific value as a Special Issue, combining interesting research works, this Special Issue intends to increase the invisibility of women in AI, showing where they are, what they do, and how they contribute to developments in Artificial Intelligence from their different places, positions, research branches and application fields. We planned to issue this book on the on Ada Lovelace Day (11/10/2022), a date internationally dedicated to the first computer programmer, a woman who had to fight the gender difficulties of her times, in the XIX century. We also thank the publisher for making this possible, thus allowing for this book to become a part of the international activities dedicated to celebrating the value of women in ICT all over the world. With this book, we want to pay homage to all the women that contributed over the years to the field of AI