Launching the Grand Challenges for Ocean Conservation

The ten most pressing Grand Challenges in Oceans Conservation were identified at the Oceans Big Think and described in a detailed working document:A Blue Revolution for Oceans: Reengineering Aquaculture for SustainabilityEnding and Recovering from Marine DebrisTransparency and Traceability from Sea to Shore:  Ending OverfishingProtecting Critical Ocean Habitats: New Tools for Marine ProtectionEngineering Ecological Resilience in Near Shore and Coastal AreasReducing the Ecological Footprint of Fishing through Smarter GearArresting the Alien Invasion: Combating Invasive SpeciesCombatting the Effects of Ocean AcidificationEnding Marine Wildlife TraffickingReviving Dead Zones: Combating Ocean Deoxygenation and Nutrient Runof

Sampling cluster endurance for peer-to-peer based content distribution networks

Several types of Content Distribution Networks are being deployed over the Internet today, based on different architectures to meet their requirements (e.g., scalability, efficiency and resiliency). Peer-to-peer (P2P) based Content Distribution Networks are promising approaches that have several advantages. Structured P2P networks, for instance, take a proactive approach and provide efficient routing mechanisms. Nevertheless, their maintenance can increase considerably in highly dynamic P2P environments. In order to address this issue, a two-tier architecture called Omicron that combines a structured overlay network with a clustering mechanism is suggested in a hybrid scheme. In this paper, we examine several sampling algorithms utilized in the aforementioned hybrid network that collect local information in order to apply a selective join procedure. Additionally, we apply the sampling algorithms on Chord in order to evaluate sampling as a general information gathering mechanism. The algorithms are based mostly on random walks inside the overlay networks. The aim of the selective join procedure is to provide a well balanced and stable overlay infrastructure that can easily overcome the unreliable behavior of the autonomous peers that constitute the network. The sampling algorithms are evaluated using simulation experiments as well as probabilistic analysis where several properties related to the graph structure are reveale

Viral communities of Shark Bay modern stromatolites

© 2018 White, Wong, Ruvindy, Neilan and Burns. Single stranded DNA viruses have been previously shown to populate the oceans on a global scale, and are endemic in microbialites of both marine and freshwater systems. We undertook for the first time direct viral metagenomic shotgun sequencing to explore the diversity of viruses in the modern stromatolites of Shark Bay Australia. The data indicate that Shark Bay marine stromatolites have similar diversity of ssDNA viruses to that of Highbourne Cay, Bahamas. ssDNA viruses in cluster uniquely in Shark Bay and Highbourne Cay, potentially due to enrichment by phi29-mediated amplification bias. Further, pyrosequencing data was assembled from the Shark Bay systems into two putative viral genomes that are related to Genomoviridae family of ssDNA viruses. In addition, the cellular fraction was shown to be enriched for antiviral defense genes including CRISPR-Cas, BREX (bacteriophage exclusion), and DISARM (defense island system associated with restriction-modification), a potentially novel finding for these systems. This is the first evidence for viruses in the Shark Bay stromatolites, and these viruses may play key roles in modulating microbial diversity as well as potentially impacting ecosystem function through infection and the recycling of key nutrients

Understanding citizen science and environmental monitoring: final report on behalf of UK Environmental Observation Framework

Citizen science can broadly be defined as the involvement of volunteers in science. Over the past decade there has been a rapid increase in the number of citizen science initiatives. The breadth of environmental-based citizen science is immense. Citizen scientists have surveyed for and monitored a broad range of taxa, and also contributed data on weather and habitats reflecting an increase in engagement with a diverse range of observational science. Citizen science has taken many varied approaches from citizen-led (co-created) projects with local community groups to, more commonly, scientist-led mass participation initiatives that are open to all sectors of society. Citizen science provides an indispensable means of combining environmental research with environmental education and wildlife recording. Here we provide a synthesis of extant citizen science projects using a novel cross-cutting approach to objectively assess understanding of citizen science and environmental monitoring including: 1. Brief overview of knowledge on the motivations of volunteers. 2. Semi-systematic review of environmental citizen science projects in order to understand the variety of extant citizen science projects. 3. Collation of detailed case studies on a selection of projects to complement the semi-systematic review. 4. Structured interviews with users of citizen science and environmental monitoring data focussing on policy, in order to more fully understand how citizen science can fit into policy needs. 5. Review of technology in citizen science and an exploration of future opportunities

Comparative genomics approach to detecting split-coding regions in a low-coverage genome: lessons from the chimaera Callorhinchus milii (Holocephali, Chondrichthyes)

Recent development of deep sequencing technologies has facilitated de novo genome sequencing projects, now conducted even by individual laboratories. However, this will yield more and more genome sequences that are not well assembled, and will hinder thorough annotation when no closely related reference genome is available. One of the challenging issues is the identification of protein-coding sequences split into multiple unassembled genomic segments, which can confound orthology assignment and various laboratory experiments requiring the identification of individual genes. In this study, using the genome of a cartilaginous fish, Callorhinchus milii, as test case, we performed gene prediction using a model specifically trained for this genome. We implemented an algorithm, designated ESPRIT, to identify possible linkages between multiple protein-coding portions derived from a single genomic locus split into multiple unassembled genomic segments. We developed a validation framework based on an artificially fragmented human genome, improvements between early and recent mouse genome assemblies, comparison with experimentally validated sequences from GenBank, and phylogenetic analyses. Our strategy provided insights into practical solutions for efficient annotation of only partially sequenced (low-coverage) genomes. To our knowledge, our study is the first formulation of a method to link unassembled genomic segments based on proteomes of relatively distantly related species as references

Gestión de sistemas P2P mediante redes overlay estructuradas

En este artículo se presenta una nueva red híbrida P2P. Todos los nodos están inmersos en una red overlay estructurada, que no se utiliza para localizar contenidos, sino para organizar dinámicamente los nodos en una arquitectura jerárquica, que permita la localización de los contenidos de una forma fácil y eficiente. Las figuras de merito del sistema propuesto son evaluadas mediante simulación.Dirección General de Innovación Tecnológica y Sociedad de la Información de la Consejería de Industria y Medio Ambiente de la Región de Murcia,y fondos FEDER de la Unión Europea

Verification of the Random Line-of-Sight Measurement Setup at 1.5-3 GHz including MIMO Throughput Measurements of a Complete Vehicle

The performance evaluation of wireless systems is crucial for the development of future systems with more connected devices. It is essential to have an easy and relevant method for ensuring the wireless communication performance of the devices. We have recently developed a new random line-of-sight (random-LOS) measurement system for evaluating the communication performance of wireless devices, e.g., transceivers and antennas installed on a vehicle. In the measurement system, a plane wave is generated in the test zone emulating the far-field wave transmitted from a radio base station. In this paper we present both numerical simulations and actual experimental results of the random-LOS over-the-air (OTA) measurement setup operating in the 1.5-3 GHz band. The measurement accuracy is determined by the field variations within the test zone, where a smaller variation gives better measurement accuracy. In this paper the achieved accuracy expressed in terms of standard deviation (STD) was evaluated to be approximately 1 dB of the power within a cylindrical test zone of height 0.4 m and diameter 2 m. The active multiple-input multiple-output (MIMO) performance of antenna systems installed on an actual vehicle was measured and evaluated using the presented setup. A comparison to a theoretical zero forcing (ZF) receiver is also presented